RNA–Protein interactions for RNA: ENST00000395761.3

CXCL1-201, Transcript of C-X-C motif chemokine ligand 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CXCL1, Length 1,097 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL1-201ENST00000395761 NIF3L1Q9GZT8 377 aa17.68■□□□□ 0.42
CXCL1-201ENST00000395761 DNAJC25Q9H1X3 360 aa17.68■□□□□ 0.42
CXCL1-201ENST00000395761 WDR6Q9NNW5 1121 aaKnown RBP17.68■□□□□ 0.42
CXCL1-201ENST00000395761 CD320Q9NPF0 282 aa17.68■□□□□ 0.42
CXCL1-201ENST00000395761 SAMSN1Q9NSI8 373 aaKnown RBP17.68■□□□□ 0.42
CXCL1-201ENST00000395761 CEP72Q9P209 647 aa17.68■□□□□ 0.42
CXCL1-201ENST00000395761 DNMT3BQ9UBC3 853 aaKnown RBP17.68■□□□□ 0.42
CXCL1-201ENST00000395761 YIPF1Q9Y548 306 aa17.68■□□□□ 0.42
CXCL1-201ENST00000395761 PCDHB5Q9Y5E4 795 aa17.68■□□□□ 0.42
CXCL1-201ENST00000395761 C5orf42Q9H799 3197 aa17.67■□□□□ 0.42
CXCL1-201ENST00000395761 PMM2O15305 246 aa17.67■□□□□ 0.42
CXCL1-201ENST00000395761 XYLBO75191 536 aa17.67■□□□□ 0.42
CXCL1-201ENST00000395761 AFPP02771 609 aaKnown RBP17.67■□□□□ 0.42
CXCL1-201ENST00000395761 POU2F2P09086 479 aa17.67■□□□□ 0.42
CXCL1-201ENST00000395761 PTPN1P18031 435 aaKnown RBP17.67■□□□□ 0.42
CXCL1-201ENST00000395761 SMARCB1Q12824 385 aa17.67■□□□□ 0.42
CXCL1-201ENST00000395761 LRMPQ12912 555 aa17.67■□□□□ 0.42
CXCL1-201ENST00000395761 ORC1Q13415 861 aa17.67■□□□□ 0.42
CXCL1-201ENST00000395761 NFE2Q16621 373 aaPredicted RBP17.67■□□□□ 0.42
CXCL1-201ENST00000395761 ANO6Q4KMQ2 910 aa17.67■□□□□ 0.42
CXCL1-201ENST00000395761 WDR44Q5JSH3 913 aa17.67■□□□□ 0.42
CXCL1-201ENST00000395761 C2orf15Q8WU43 125 aaKnown RBP17.67■□□□□ 0.42
CXCL1-201ENST00000395761 MYLPFQ96A32 169 aa17.67■□□□□ 0.42
CXCL1-201ENST00000395761 SEPT5Q99719 369 aaPredicted RBP17.67■□□□□ 0.42
CXCL1-201ENST00000395761 COL25A1Q9BXS0 654 aaPredicted RBP17.67■□□□□ 0.42
CXCL1-201ENST00000395761 NAT10Q9H0A0 1025 aaKnown RBP17.67■□□□□ 0.42
CXCL1-201ENST00000395761 TSPY26PQ9H489 355 aa17.67■□□□□ 0.42
CXCL1-201ENST00000395761 PRKAG3Q9UGI9 489 aa17.67■□□□□ 0.42
CXCL1-201ENST00000395761 HMGXB4Q9UGU5 601 aa17.67■□□□□ 0.42
CXCL1-201ENST00000395761 C2orf16Q68DN1 1984 aa17.66■□□□□ 0.42
CXCL1-201ENST00000395761 C19orf67A6NJJ6 358 aa17.66■□□□□ 0.42
CXCL1-201ENST00000395761 N4BP1O75113 896 aaKnown RBP17.66■□□□□ 0.42
CXCL1-201ENST00000395761 HAPLN1P10915 354 aaPredicted RBP17.66■□□□□ 0.42
CXCL1-201ENST00000395761 CYP2F1P24903 491 aa17.66■□□□□ 0.42
CXCL1-201ENST00000395761 MTIF2P46199 727 aaKnown RBP17.66■□□□□ 0.42
CXCL1-201ENST00000395761 NDST1P52848 882 aa17.66■□□□□ 0.42
CXCL1-201ENST00000395761 MGAT5BQ3V5L5 792 aa17.66■□□□□ 0.42
CXCL1-201ENST00000395761 MDH1BQ5I0G3 518 aa17.66■□□□□ 0.42
CXCL1-201ENST00000395761 SPATA2LQ8IUW3 424 aaPredicted RBP17.66■□□□□ 0.42
CXCL1-201ENST00000395761 LMO3Q8TAP4 145 aa17.66■□□□□ 0.42
CXCL1-201ENST00000395761 MYCBPAPQ8TBZ2 947 aa17.66■□□□□ 0.42
CXCL1-201ENST00000395761 SPPL2BQ8TCT7 592 aa17.66■□□□□ 0.42
CXCL1-201ENST00000395761 ARID3AQ99856 593 aa17.66■□□□□ 0.42
CXCL1-201ENST00000395761 CYP3A43Q9HB55 503 aa17.66■□□□□ 0.42
CXCL1-201ENST00000395761 HSFX1Q9UBD0 423 aa17.66■□□□□ 0.42
CXCL1-201ENST00000395761 NFE2L3Q9Y4A8 694 aa17.66■□□□□ 0.42
CXCL1-201ENST00000395761 CLUHO75153 1309 aa17.66■□□□□ 0.42
CXCL1-201ENST00000395761 P4HA2O15460 535 aa17.65■□□□□ 0.42
CXCL1-201ENST00000395761 PTPN2P17706 415 aa17.65■□□□□ 0.42
CXCL1-201ENST00000395761 ATF6P18850 670 aa17.65■□□□□ 0.42
CXCL1-201ENST00000395761 CD58P19256 250 aa17.65■□□□□ 0.42
CXCL1-201ENST00000395761 ALDH1A3P47895 512 aa17.65■□□□□ 0.42
CXCL1-201ENST00000395761 TUFMP49411 452 aaKnown RBP17.65■□□□□ 0.42
CXCL1-201ENST00000395761 GPR15P49685 360 aa17.65■□□□□ 0.42
CXCL1-201ENST00000395761 ZNF165P49910 485 aa17.65■□□□□ 0.42
CXCL1-201ENST00000395761 SDHAF4Q5VUM1 108 aa17.65■□□□□ 0.42
CXCL1-201ENST00000395761 ACOT1Q86TX2 421 aa17.65■□□□□ 0.42
CXCL1-201ENST00000395761 FAM114A1Q8IWE2 563 aa17.65■□□□□ 0.42
CXCL1-201ENST00000395761 HS6ST3Q8IZP7 471 aa17.65■□□□□ 0.42
CXCL1-201ENST00000395761 B3GALNT2Q8NCR0 500 aa17.65■□□□□ 0.42
CXCL1-201ENST00000395761 EHBP1Q8NDI1 1231 aa17.65■□□□□ 0.42
CXCL1-201ENST00000395761 GPR152Q8TDT2 470 aa17.65■□□□□ 0.42
CXCL1-201ENST00000395761 WHAMMQ8TF30 809 aa17.65■□□□□ 0.42
CXCL1-201ENST00000395761 PCED1BQ96HM7 432 aa17.65■□□□□ 0.42
CXCL1-201ENST00000395761 ZNF512Q96ME7 567 aaPredicted RBP17.65■□□□□ 0.42
CXCL1-201ENST00000395761 TWNKQ96RR1 684 aa17.65■□□□□ 0.42
CXCL1-201ENST00000395761 CORO1BQ9BR76 489 aa17.65■□□□□ 0.42
CXCL1-201ENST00000395761 VCANP13611 3396 aa17.65■□□□□ 0.42
CXCL1-201ENST00000395761 KCNJ18B7U540 433 aa17.64■□□□□ 0.41
CXCL1-201ENST00000395761 C2CD4DB7Z1M9 353 aa17.64■□□□□ 0.41
CXCL1-201ENST00000395761 LOC730098B7Z3J9 87 aa17.64■□□□□ 0.41
CXCL1-201ENST00000395761 RHOP08100 348 aa17.64■□□□□ 0.41
CXCL1-201ENST00000395761 EPHB3P54753 998 aa17.64■□□□□ 0.41
CXCL1-201ENST00000395761 CYP27A1Q02318 531 aa17.64■□□□□ 0.41
CXCL1-201ENST00000395761 INCA1Q0VD86 236 aa17.64■□□□□ 0.41
CXCL1-201ENST00000395761 PLD1Q13393 1074 aa17.64■□□□□ 0.41
CXCL1-201ENST00000395761 KCNJ12Q14500 433 aa17.64■□□□□ 0.41
CXCL1-201ENST00000395761 SLC5A9Q2M3M2 681 aa17.64■□□□□ 0.41
CXCL1-201ENST00000395761 PABPC1LQ4VXU2 614 aaKnown RBP17.64■□□□□ 0.41
CXCL1-201ENST00000395761 GJD3Q8N144 294 aa17.64■□□□□ 0.41
CXCL1-201ENST00000395761 ITFG1Q8TB96 612 aa17.64■□□□□ 0.41
CXCL1-201ENST00000395761 GIPC2Q8TF65 315 aa17.64■□□□□ 0.41
CXCL1-201ENST00000395761 B3GNT5Q9BYG0 378 aa17.64■□□□□ 0.41
CXCL1-201ENST00000395761 ELOVL4Q9GZR5 314 aa17.64■□□□□ 0.41
CXCL1-201ENST00000395761 ABCB6Q9NP58 842 aa17.64■□□□□ 0.41
CXCL1-201ENST00000395761 FANCLQ9NW38 375 aa17.64■□□□□ 0.41
CXCL1-201ENST00000395761 MAGEC2Q9UBF1 373 aaPredicted RBP17.64■□□□□ 0.41
CXCL1-201ENST00000395761 DOCK6Q96HP0 2047 aa17.64■□□□□ 0.41
CXCL1-201ENST00000395761 NRG2O14511 850 aaPredicted RBP17.63■□□□□ 0.41
CXCL1-201ENST00000395761 CILPO75339 1184 aa17.63■□□□□ 0.41
CXCL1-201ENST00000395761 BDNFP23560 247 aa17.63■□□□□ 0.41
CXCL1-201ENST00000395761 FSHRP23945 695 aa17.63■□□□□ 0.41
CXCL1-201ENST00000395761 SSTR3P32745 418 aaPredicted RBP17.63■□□□□ 0.41
CXCL1-201ENST00000395761 CETN1Q12798 172 aa17.63■□□□□ 0.41
CXCL1-201ENST00000395761 CUL2Q13617 745 aa17.63■□□□□ 0.41
CXCL1-201ENST00000395761 NCAPHQ15003 741 aa17.63■□□□□ 0.41
CXCL1-201ENST00000395761 IQCB1Q15051 598 aa17.63■□□□□ 0.41
CXCL1-201ENST00000395761 MAPRE1Q15691 268 aaKnown RBP17.63■□□□□ 0.41
CXCL1-201ENST00000395761 DDR2Q16832 855 aa17.63■□□□□ 0.41
CXCL1-201ENST00000395761 CFAP221Q4G0U5 840 aa17.63■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 82.5 ms