RNA–Protein interactions for RNA: ENST00000375299.7

UPF3A-202, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF3A, Length 2,387 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-202ENST00000375299 SGK1O00141 431 aa22.23■■□□□ 1.15
UPF3A-202ENST00000375299 HNRNPDLO14979 420 aaKnown RBP22.23■■□□□ 1.15
UPF3A-202ENST00000375299 SSTR1P30872 391 aa22.23■■□□□ 1.15
UPF3A-202ENST00000375299 BIRC2Q13490 618 aa22.23■■□□□ 1.15
UPF3A-202ENST00000375299 ZRSR2Q15696 482 aaKnown RBP22.23■■□□□ 1.15
UPF3A-202ENST00000375299 KLHL38Q2WGJ6 581 aa22.23■■□□□ 1.15
UPF3A-202ENST00000375299 SPOPLQ6IQ16 392 aa22.23■■□□□ 1.15
UPF3A-202ENST00000375299 PCGF5Q86SE9 256 aa22.23■■□□□ 1.15
UPF3A-202ENST00000375299 SPIRE2Q8WWL2 714 aa22.23■■□□□ 1.15
UPF3A-202ENST00000375299 MCUR1Q96AQ8 359 aa22.23■■□□□ 1.15
UPF3A-202ENST00000375299 TSSK1BQ9BXA7 367 aa22.23■■□□□ 1.15
UPF3A-202ENST00000375299 hCG_1818297A0A087WSY0 165 aa22.23■■□□□ 1.15
UPF3A-202ENST00000375299 CAPN9O14815 690 aa22.23■■□□□ 1.15
UPF3A-202ENST00000375299 IFNB1P01574 187 aa22.23■■□□□ 1.15
UPF3A-202ENST00000375299 RPL7AP62424 266 aaKnown RBP22.23■■□□□ 1.15
UPF3A-202ENST00000375299 MRPS9P82933 396 aaKnown RBP22.23■■□□□ 1.15
UPF3A-202ENST00000375299 CDK16Q00536 496 aa22.23■■□□□ 1.15
UPF3A-202ENST00000375299 ROR2Q01974 943 aaKnown RBP22.23■■□□□ 1.15
UPF3A-202ENST00000375299 ZYXQ15942 572 aaKnown RBP22.23■■□□□ 1.15
UPF3A-202ENST00000375299 OR52E8Q6IFG1 317 aa22.23■■□□□ 1.15
UPF3A-202ENST00000375299 PPP1R2P3Q6NXS1 205 aa22.23■■□□□ 1.15
UPF3A-202ENST00000375299 PYROXD1Q8WU10 500 aa22.23■■□□□ 1.15
UPF3A-202ENST00000375299 PTPRN2Q92932 1015 aa22.23■■□□□ 1.15
UPF3A-202ENST00000375299 TMEM121Q9BTD3 319 aa22.23■■□□□ 1.15
UPF3A-202ENST00000375299 PHACTR1Q9C0D0 580 aa22.23■■□□□ 1.15
UPF3A-202ENST00000375299 C12orf65Q9H3J6 166 aaKnown RBP22.23■■□□□ 1.15
UPF3A-202ENST00000375299 ACSS3Q9H6R3 686 aa22.23■■□□□ 1.15
UPF3A-202ENST00000375299 SYNCQ9H7C4 482 aa22.23■■□□□ 1.15
UPF3A-202ENST00000375299 SCOCQ9UIL1 159 aa22.23■■□□□ 1.15
UPF3A-202ENST00000375299 PCDHB4Q9Y5E5 795 aa22.23■■□□□ 1.15
UPF3A-202ENST00000375299 ATP9AO75110 1047 aa22.22■■□□□ 1.15
UPF3A-202ENST00000375299 PTPN7P35236 360 aa22.22■■□□□ 1.15
UPF3A-202ENST00000375299 ZACNQ401N2 412 aa22.22■■□□□ 1.15
UPF3A-202ENST00000375299 SAMD3Q8N6K7 520 aa22.22■■□□□ 1.15
UPF3A-202ENST00000375299 AGBL1Q96MI9 1066 aa22.22■■□□□ 1.15
UPF3A-202ENST00000375299 NTPCRQ9BSD7 190 aaKnown RBP22.22■■□□□ 1.15
UPF3A-202ENST00000375299 CCPG1Q9ULG6 757 aa22.22■■□□□ 1.15
UPF3A-202ENST00000375299 MTO1Q9Y2Z2 717 aaKnown RBP22.22■■□□□ 1.15
UPF3A-202ENST00000375299 C2CD2Q9Y426 696 aa22.22■■□□□ 1.15
UPF3A-202ENST00000375299 IVNS1ABPQ9Y6Y0 642 aa22.22■■□□□ 1.15
UPF3A-202ENST00000375299 MYH9P35579 1960 aaKnown RBP22.22■■□□□ 1.15
UPF3A-202ENST00000375299 SERPINB3P29508 390 aa22.21■■□□□ 1.15
UPF3A-202ENST00000375299 CUL2Q13617 745 aa22.21■■□□□ 1.15
UPF3A-202ENST00000375299 LRRC38Q5VT99 294 aa22.21■■□□□ 1.15
UPF3A-202ENST00000375299 TMEM270Q6UE05 265 aa22.21■■□□□ 1.15
UPF3A-202ENST00000375299 RINLQ6ZS11 566 aa22.21■■□□□ 1.15
UPF3A-202ENST00000375299 LRRC6Q86X45 466 aa22.21■■□□□ 1.15
UPF3A-202ENST00000375299 VPS52Q8N1B4 723 aa22.21■■□□□ 1.15
UPF3A-202ENST00000375299 IFT43Q96FT9 208 aa22.21■■□□□ 1.15
UPF3A-202ENST00000375299 TMEM120AQ9BXJ8 343 aa22.21■■□□□ 1.15
UPF3A-202ENST00000375299 MMADHCQ9H3L0 296 aaPredicted RBP22.21■■□□□ 1.15
UPF3A-202ENST00000375299 PIDD1Q9HB75 910 aa22.21■■□□□ 1.15
UPF3A-202ENST00000375299 SDAD1Q9NVU7 687 aaKnown RBP eCLIP22.21■■□□□ 1.15
UPF3A-202ENST00000375299 GOLGA8RI6L899 631 aa22.21■■□□□ 1.15
UPF3A-202ENST00000375299 ARL4CP56559 192 aa22.21■■□□□ 1.15
UPF3A-202ENST00000375299 GAD2Q05329 585 aa22.21■■□□□ 1.15
UPF3A-202ENST00000375299 KRT72Q14CN4 511 aa22.21■■□□□ 1.15
UPF3A-202ENST00000375299 TDRD10Q5VZ19 366 aaKnown RBP22.21■■□□□ 1.15
UPF3A-202ENST00000375299 GALNT15Q8N3T1 639 aa22.21■■□□□ 1.15
UPF3A-202ENST00000375299 DCAKDQ8WVC6 231 aa22.21■■□□□ 1.15
UPF3A-202ENST00000375299 PRR11Q96HE9 360 aaPredicted RBP22.21■■□□□ 1.15
UPF3A-202ENST00000375299 KCNK13Q9HB14 408 aa22.21■■□□□ 1.15
UPF3A-202ENST00000375299 FEM1BQ9UK73 627 aa22.21■■□□□ 1.15
UPF3A-202ENST00000375299 TMEM191CA6NGB0 347 aa22.2■■□□□ 1.15
UPF3A-202ENST00000375299 TCP10L2B9ZVM9 353 aa22.2■■□□□ 1.15
UPF3A-202ENST00000375299 NFIBO00712 420 aa22.2■■□□□ 1.15
UPF3A-202ENST00000375299 TBX10O75333 385 aa22.2■■□□□ 1.15
UPF3A-202ENST00000375299 TGDSO95455 350 aa22.2■■□□□ 1.15
UPF3A-202ENST00000375299 C4BPAP04003 597 aaKnown RBP22.2■■□□□ 1.15
UPF3A-202ENST00000375299 TMEM191BP0C7N4 346 aa22.2■■□□□ 1.15
UPF3A-202ENST00000375299 RAB27AP51159 221 aa22.2■■□□□ 1.15
UPF3A-202ENST00000375299 JAK3P52333 1124 aa22.2■■□□□ 1.15
UPF3A-202ENST00000375299 CLDN10P78369 228 aa22.2■■□□□ 1.15
UPF3A-202ENST00000375299 PLCB3Q01970 1234 aa22.2■■□□□ 1.15
UPF3A-202ENST00000375299 ZBTB16Q05516 673 aa22.2■■□□□ 1.15
UPF3A-202ENST00000375299 ZNF252P-AS1Q0IIN9 211 aa22.2■■□□□ 1.15
UPF3A-202ENST00000375299 TFDP3Q5H9I0 405 aa22.2■■□□□ 1.15
UPF3A-202ENST00000375299 RNF220Q5VTB9 566 aa22.2■■□□□ 1.15
UPF3A-202ENST00000375299 STMN2Q93045 179 aa22.2■■□□□ 1.15
UPF3A-202ENST00000375299 KLF6Q99612 283 aaPredicted RBP22.2■■□□□ 1.15
UPF3A-202ENST00000375299 FBXO6Q9NRD1 293 aaPredicted RBP22.2■■□□□ 1.15
UPF3A-202ENST00000375299 STX18Q9P2W9 335 aaKnown RBP22.2■■□□□ 1.15
UPF3A-202ENST00000375299 ANKRD33BA6NCL7 494 aa22.2■■□□□ 1.14
UPF3A-202ENST00000375299 TNNI1P19237 187 aa22.2■■□□□ 1.14
UPF3A-202ENST00000375299 SOX10P56693 466 aa22.2■■□□□ 1.14
UPF3A-202ENST00000375299 AP1B1Q10567 949 aa22.2■■□□□ 1.14
UPF3A-202ENST00000375299 MSS51Q4VC12 460 aa22.2■■□□□ 1.14
UPF3A-202ENST00000375299 FNBP1LQ5T0N5 605 aa22.2■■□□□ 1.14
UPF3A-202ENST00000375299 CCDC62Q6P9F0 684 aa22.2■■□□□ 1.14
UPF3A-202ENST00000375299 C3orf62Q6ZUJ4 267 aa22.2■■□□□ 1.14
UPF3A-202ENST00000375299 PPIL6Q8IXY8 311 aa22.2■■□□□ 1.14
UPF3A-202ENST00000375299 PPFIBP2Q8ND30 876 aa22.2■■□□□ 1.14
UPF3A-202ENST00000375299 FLAD1Q8NFF5 587 aa22.2■■□□□ 1.14
UPF3A-202ENST00000375299 ZFAND2BQ8WV99 257 aa22.2■■□□□ 1.14
UPF3A-202ENST00000375299 WDR60Q8WVS4 1066 aa22.2■■□□□ 1.14
UPF3A-202ENST00000375299 BICD1Q96G01 975 aa22.2■■□□□ 1.14
UPF3A-202ENST00000375299 FNBP1Q96RU3 617 aa22.2■■□□□ 1.14
UPF3A-202ENST00000375299 ALG13Q9NP73 1137 aaKnown RBP22.2■■□□□ 1.14
UPF3A-202ENST00000375299 METTL5Q9NRN9 209 aaKnown RBP22.2■■□□□ 1.14
UPF3A-202ENST00000375299 TAS2R1Q9NYW7 299 aa22.2■■□□□ 1.14
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms