RNA–Protein interactions for RNA: ENST00000356786.9

CCDC88B-202, Transcript of coiled-coil domain containing 88B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC88B, Length 4,915 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-202ENST00000356786 TPI1P60174 286 aa20.35■□□□□ 0.85
CCDC88B-202ENST00000356786 PDAP1Q13442 181 aaKnown RBP20.35■□□□□ 0.85
CCDC88B-202ENST00000356786 NT5DC1Q5TFE4 455 aa20.35■□□□□ 0.85
CCDC88B-202ENST00000356786 SLC25A41Q8N5S1 370 aa20.35■□□□□ 0.85
CCDC88B-202ENST00000356786 AGAP11Q8TF27 550 aa20.35■□□□□ 0.85
CCDC88B-202ENST00000356786 EXOSC4Q9NPD3 245 aaKnown RBP20.35■□□□□ 0.85
CCDC88B-202ENST00000356786 GDF3Q9NR23 364 aa20.35■□□□□ 0.85
CCDC88B-202ENST00000356786 STIP1P31948 543 aaKnown RBP20.34■□□□□ 0.85
CCDC88B-202ENST00000356786 SERPINB5P36952 375 aa20.34■□□□□ 0.85
CCDC88B-202ENST00000356786 OTUD4Q01804 1114 aaKnown RBP20.34■□□□□ 0.85
CCDC88B-202ENST00000356786 PPP2R3CQ969Q6 453 aa20.34■□□□□ 0.85
CCDC88B-202ENST00000356786 WNK4Q96J92 1243 aa20.34■□□□□ 0.85
CCDC88B-202ENST00000356786 SLC39A10Q9ULF5 831 aa20.34■□□□□ 0.85
CCDC88B-202ENST00000356786 A0A0U1RQJ8 604 aa20.34■□□□□ 0.85
CCDC88B-202ENST00000356786 DFFAO00273 331 aa20.34■□□□□ 0.85
CCDC88B-202ENST00000356786 AASDHQ4L235 1098 aaPredicted RBP20.34■□□□□ 0.85
CCDC88B-202ENST00000356786 AP5M1Q9H0R1 490 aa20.34■□□□□ 0.85
CCDC88B-202ENST00000356786 EFCAB1Q9HAE3 211 aa20.34■□□□□ 0.85
CCDC88B-202ENST00000356786 CBX6O95503 412 aa20.34■□□□□ 0.85
CCDC88B-202ENST00000356786 ATP6V1E1P36543 226 aa20.34■□□□□ 0.85
CCDC88B-202ENST00000356786 HSD17B4P51659 736 aa20.34■□□□□ 0.85
CCDC88B-202ENST00000356786 EFNA5P52803 228 aa20.34■□□□□ 0.85
CCDC88B-202ENST00000356786 SGSM1Q2NKQ1 1148 aa20.34■□□□□ 0.85
CCDC88B-202ENST00000356786 PPHLN1Q8NEY8 458 aaKnown RBP20.34■□□□□ 0.85
CCDC88B-202ENST00000356786 PGM2Q96G03 612 aa20.34■□□□□ 0.85
CCDC88B-202ENST00000356786 ELMO2Q96JJ3 720 aa20.34■□□□□ 0.85
CCDC88B-202ENST00000356786 BGNP21810 368 aa20.34■□□□□ 0.85
CCDC88B-202ENST00000356786 GTF2H1P32780 548 aa20.34■□□□□ 0.85
CCDC88B-202ENST00000356786 MRPL28Q13084 256 aaKnown RBP20.34■□□□□ 0.85
CCDC88B-202ENST00000356786 EP400NLQ6ZTU2 488 aa20.34■□□□□ 0.85
CCDC88B-202ENST00000356786 ILDR1Q86SU0 546 aaPredicted RBP20.34■□□□□ 0.85
CCDC88B-202ENST00000356786 SGF29Q96ES7 293 aa20.34■□□□□ 0.85
CCDC88B-202ENST00000356786 KLHL25Q9H0H3 589 aa20.34■□□□□ 0.85
CCDC88B-202ENST00000356786 GIMAP4Q9NUV9 329 aa20.34■□□□□ 0.85
CCDC88B-202ENST00000356786 ARHGEF38Q9NXL2 777 aa20.34■□□□□ 0.85
CCDC88B-202ENST00000356786 CAMSAP3Q9P1Y5 1249 aaPredicted RBP20.34■□□□□ 0.85
CCDC88B-202ENST00000356786 SUGT1Q9Y2Z0 365 aa20.34■□□□□ 0.85
CCDC88B-202ENST00000356786 FAM200BP0CF97 657 aa20.33■□□□□ 0.85
CCDC88B-202ENST00000356786 IRGCQ6NXR0 463 aa20.33■□□□□ 0.85
CCDC88B-202ENST00000356786 NOP9Q86U38 636 aaKnown RBP20.33■□□□□ 0.85
CCDC88B-202ENST00000356786 TMEM143Q96AN5 459 aa20.33■□□□□ 0.85
CCDC88B-202ENST00000356786 KIF12Q96FN5 646 aa20.33■□□□□ 0.85
CCDC88B-202ENST00000356786 SP110Q9HB58 689 aa20.33■□□□□ 0.85
CCDC88B-202ENST00000356786 RICTORQ6R327 1708 aa20.33■□□□□ 0.85
CCDC88B-202ENST00000356786 PAWRQ96IZ0 340 aaKnown RBP20.33■□□□□ 0.85
CCDC88B-202ENST00000356786 EPAS1Q99814 870 aa20.33■□□□□ 0.85
CCDC88B-202ENST00000356786 DDX18Q9NVP1 670 aaKnown RBP20.33■□□□□ 0.85
CCDC88B-202ENST00000356786 MMP10P09238 476 aa20.33■□□□□ 0.84
CCDC88B-202ENST00000356786 SUPT20HL1Q3ZLR7 823 aa20.33■□□□□ 0.84
CCDC88B-202ENST00000356786 TMPRSS6Q8IU80 811 aa20.33■□□□□ 0.84
CCDC88B-202ENST00000356786 TATDN2Q93075 761 aa20.33■□□□□ 0.84
CCDC88B-202ENST00000356786 KAZALD1Q96I82 304 aa20.33■□□□□ 0.84
CCDC88B-202ENST00000356786 JMJD4Q9H9V9 463 aa20.33■□□□□ 0.84
CCDC88B-202ENST00000356786 SLC24A2Q9UI40 661 aa20.33■□□□□ 0.84
CCDC88B-202ENST00000356786 AGAP1Q9UPQ3 857 aa20.33■□□□□ 0.84
CCDC88B-202ENST00000356786 DNAJC16Q9Y2G8 782 aa20.33■□□□□ 0.84
CCDC88B-202ENST00000356786 TFE3P19532 575 aaPredicted RBP20.32■□□□□ 0.84
CCDC88B-202ENST00000356786 GPSM2P81274 684 aa20.32■□□□□ 0.84
CCDC88B-202ENST00000356786 RUNX1T1Q06455 604 aa20.32■□□□□ 0.84
CCDC88B-202ENST00000356786 BNC2Q6ZN30 1099 aaPredicted RBP20.32■□□□□ 0.84
CCDC88B-202ENST00000356786 DAGLBQ8NCG7 672 aa20.32■□□□□ 0.84
CCDC88B-202ENST00000356786 JADE3Q92613 823 aa20.32■□□□□ 0.84
CCDC88B-202ENST00000356786 FLT1P17948 1338 aa20.32■□□□□ 0.84
CCDC88B-202ENST00000356786 MYO1GB0I1T2 1018 aa20.32■□□□□ 0.84
CCDC88B-202ENST00000356786 AP3B1O00203 1094 aa20.32■□□□□ 0.84
CCDC88B-202ENST00000356786 PSTPIP1O43586 416 aa20.32■□□□□ 0.84
CCDC88B-202ENST00000356786 NDUFB10O96000 172 aa20.32■□□□□ 0.84
CCDC88B-202ENST00000356786 LRRC74BQ6ZQY2 392 aa20.32■□□□□ 0.84
CCDC88B-202ENST00000356786 MFN1Q8IWA4 741 aa20.32■□□□□ 0.84
CCDC88B-202ENST00000356786 DCPSQ96C86 337 aaKnown RBP20.32■□□□□ 0.84
CCDC88B-202ENST00000356786 BTBD10Q9BSF8 475 aa20.32■□□□□ 0.84
CCDC88B-202ENST00000356786 SCN3BQ9NY72 215 aa20.32■□□□□ 0.84
CCDC88B-202ENST00000356786 POLRMTO00411 1230 aaKnown RBP20.32■□□□□ 0.84
CCDC88B-202ENST00000356786 GZMAP12544 262 aa20.32■□□□□ 0.84
CCDC88B-202ENST00000356786 HMOX2P30519 316 aa20.32■□□□□ 0.84
CCDC88B-202ENST00000356786 DEPDC1Q5TB30 811 aa20.32■□□□□ 0.84
CCDC88B-202ENST00000356786 SMIM5Q71RC9 77 aa20.32■□□□□ 0.84
CCDC88B-202ENST00000356786 MPP4Q96JB8 637 aa20.32■□□□□ 0.84
CCDC88B-202ENST00000356786 CATSPER2Q96P56 530 aa20.32■□□□□ 0.84
CCDC88B-202ENST00000356786 SPON2Q9BUD6 331 aa20.32■□□□□ 0.84
CCDC88B-202ENST00000356786 PCDHGB4Q9UN71 923 aa20.32■□□□□ 0.84
CCDC88B-202ENST00000356786 GLRA3O75311 464 aa20.32■□□□□ 0.84
CCDC88B-202ENST00000356786 SWT1Q5T5J6 900 aaKnown RBP20.32■□□□□ 0.84
CCDC88B-202ENST00000356786 TRAF7Q6Q0C0 670 aa20.32■□□□□ 0.84
CCDC88B-202ENST00000356786 CCDC81Q6ZN84 652 aa20.32■□□□□ 0.84
CCDC88B-202ENST00000356786 PODNQ7Z5L7 613 aa20.32■□□□□ 0.84
CCDC88B-202ENST00000356786 SCFD1Q8WVM8 642 aa20.32■□□□□ 0.84
CCDC88B-202ENST00000356786 VPS50Q96JG6 964 aa20.32■□□□□ 0.84
CCDC88B-202ENST00000356786 TLR2O60603 784 aa20.31■□□□□ 0.84
CCDC88B-202ENST00000356786 PLEKHA7Q6IQ23 1121 aa20.31■□□□□ 0.84
CCDC88B-202ENST00000356786 USP33Q8TEY7 942 aa20.31■□□□□ 0.84
CCDC88B-202ENST00000356786 TEX12Q9BXU0 123 aa20.31■□□□□ 0.84
CCDC88B-202ENST00000356786 NDFIP2Q9NV92 336 aa20.31■□□□□ 0.84
CCDC88B-202ENST00000356786 APPL1Q9UKG1 709 aa20.31■□□□□ 0.84
CCDC88B-202ENST00000356786 NFKBIAP25963 317 aa20.31■□□□□ 0.84
CCDC88B-202ENST00000356786 RPL21P46778 160 aaKnown RBP20.31■□□□□ 0.84
CCDC88B-202ENST00000356786 PLA2G4FQ68DD2 849 aa20.31■□□□□ 0.84
CCDC88B-202ENST00000356786 C11orf63Q6NUN7 778 aa20.31■□□□□ 0.84
CCDC88B-202ENST00000356786 TSPAN17Q96FV3 270 aa20.31■□□□□ 0.84
CCDC88B-202ENST00000356786 MAML3Q96JK9 1138 aa20.31■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms