RNA–Protein interactions for RNA: ENST00000354497.4

RTN3-204, Transcript of reticulon 3, humanhuman

TSL 2 BASIC

Gene RTN3, Length 1,407 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-204ENST00000354497 ZBTB45Q96K62 511 aaPredicted RBP12.14□□□□□ -0.47
RTN3-204ENST00000354497 FAM83CQ9BQN1 747 aa12.14□□□□□ -0.47
RTN3-204ENST00000354497 PTPRHQ9HD43 1115 aa12.14□□□□□ -0.47
RTN3-204ENST00000354497 KMT5AQ9NQR1 393 aa12.14□□□□□ -0.47
RTN3-204ENST00000354497 IGF2RP11717 2491 aa12.14□□□□□ -0.47
RTN3-204ENST00000354497 TRIP11Q15643 1979 aa12.14□□□□□ -0.47
RTN3-204ENST00000354497 BTBD18B2RXH4 712 aa12.13□□□□□ -0.47
RTN3-204ENST00000354497 TRAK2O60296 914 aa12.13□□□□□ -0.47
RTN3-204ENST00000354497 LARGE1O95461 756 aa12.13□□□□□ -0.47
RTN3-204ENST00000354497 CXCL8P10145 99 aa12.13□□□□□ -0.47
RTN3-204ENST00000354497 BCKDHBP21953 392 aa12.13□□□□□ -0.47
RTN3-204ENST00000354497 RPA1P27694 616 aa12.13□□□□□ -0.47
RTN3-204ENST00000354497 GUCY2FP51841 1108 aa12.13□□□□□ -0.47
RTN3-204ENST00000354497 SEC13P55735 322 aa12.13□□□□□ -0.47
RTN3-204ENST00000354497 MYBPC2Q14324 1141 aa12.13□□□□□ -0.47
RTN3-204ENST00000354497 SLC10A6Q3KNW5 377 aa12.13□□□□□ -0.47
RTN3-204ENST00000354497 FBXO43Q4G163 708 aa12.13□□□□□ -0.47
RTN3-204ENST00000354497 SLC39A12Q504Y0 691 aa12.13□□□□□ -0.47
RTN3-204ENST00000354497 TRIM61Q5EBN2 209 aa12.13□□□□□ -0.47
RTN3-204ENST00000354497 ANO7Q6IWH7 933 aa12.13□□□□□ -0.47
RTN3-204ENST00000354497 DIS3L2Q8IYB7 885 aaKnown RBP12.13□□□□□ -0.47
RTN3-204ENST00000354497 CMTM8Q8IZV2 173 aa12.13□□□□□ -0.47
RTN3-204ENST00000354497 CPA6Q8N4T0 437 aa12.13□□□□□ -0.47
RTN3-204ENST00000354497 MAB21L3Q8N8X9 362 aa12.13□□□□□ -0.47
RTN3-204ENST00000354497 CD101Q93033 1021 aa12.13□□□□□ -0.47
RTN3-204ENST00000354497 NUSAP1Q9BXS6 441 aaKnown RBP12.13□□□□□ -0.47
RTN3-204ENST00000354497 MSRB2Q9Y3D2 182 aa12.13□□□□□ -0.47
RTN3-204ENST00000354497 EML5Q05BV3 1969 aa12.12□□□□□ -0.47
RTN3-204ENST00000354497 SLC16A4O15374 487 aa12.12□□□□□ -0.47
RTN3-204ENST00000354497 ODC1P11926 461 aa12.12□□□□□ -0.47
RTN3-204ENST00000354497 WEE1P30291 646 aa12.12□□□□□ -0.47
RTN3-204ENST00000354497 NMT1P30419 496 aaKnown RBP12.12□□□□□ -0.47
RTN3-204ENST00000354497 GJA4P35212 333 aa12.12□□□□□ -0.47
RTN3-204ENST00000354497 TUFMP49411 452 aaKnown RBP12.12□□□□□ -0.47
RTN3-204ENST00000354497 STRN3Q13033 797 aa12.12□□□□□ -0.47
RTN3-204ENST00000354497 TRIM29Q14134 588 aa12.12□□□□□ -0.47
RTN3-204ENST00000354497 NOLC1Q14978 699 aaKnown RBP eCLIP12.12□□□□□ -0.475e-6■□□□□ 9.2
RTN3-204ENST00000354497 HAUS3Q68CZ6 603 aa12.12□□□□□ -0.47
RTN3-204ENST00000354497 TAS1R3Q7RTX0 852 aa12.12□□□□□ -0.47
RTN3-204ENST00000354497 USP13Q92995 863 aaPredicted RBP12.12□□□□□ -0.47
RTN3-204ENST00000354497 TMEM134Q9H6X4 195 aa12.12□□□□□ -0.47
RTN3-204ENST00000354497 EBF1Q9UH73 591 aa12.12□□□□□ -0.47
RTN3-204ENST00000354497 KIAA1024Q9UPX6 916 aa12.12□□□□□ -0.47
RTN3-204ENST00000354497 KIF3AQ9Y496 699 aa12.12□□□□□ -0.47
RTN3-204ENST00000354497 ATXN2Q99700 1313 aaKnown RBP12.12□□□□□ -0.47
RTN3-204ENST00000354497 SPAG17Q6Q759 2223 aa12.12□□□□□ -0.47
RTN3-204ENST00000354497 ANKRD11Q6UB99 2663 aaPredicted RBP12.12□□□□□ -0.47
RTN3-204ENST00000354497 EIF4E1BA6NMX2 242 aaKnown RBP12.11□□□□□ -0.47
RTN3-204ENST00000354497 ABLIM1O14639 778 aa12.11□□□□□ -0.47
RTN3-204ENST00000354497 PFKFB2O60825 505 aa12.11□□□□□ -0.47
RTN3-204ENST00000354497 HIP1RO75146 1068 aa12.11□□□□□ -0.47
RTN3-204ENST00000354497 CTDNEP1O95476 244 aa12.11□□□□□ -0.47
RTN3-204ENST00000354497 OR52Z1P0C646 297 aa12.11□□□□□ -0.47
RTN3-204ENST00000354497 ATF6P18850 670 aa12.11□□□□□ -0.47
RTN3-204ENST00000354497 PROZP22891 400 aa12.11□□□□□ -0.47
RTN3-204ENST00000354497 LRPAP1P30533 357 aa12.11□□□□□ -0.47
RTN3-204ENST00000354497 RDXP35241 583 aaKnown RBP12.11□□□□□ -0.47
RTN3-204ENST00000354497 LMAN2Q12907 356 aa12.11□□□□□ -0.47
RTN3-204ENST00000354497 PDGFRLQ15198 375 aa12.11□□□□□ -0.47
RTN3-204ENST00000354497 ECM1Q16610 540 aa12.11□□□□□ -0.47
RTN3-204ENST00000354497 TXNDC8Q6A555 127 aa12.11□□□□□ -0.47
RTN3-204ENST00000354497 CHCHD4Q8N4Q1 142 aa12.11□□□□□ -0.47
RTN3-204ENST00000354497 MYRIPQ8NFW9 859 aa12.11□□□□□ -0.47
RTN3-204ENST00000354497 GTPBP2Q9BX10 602 aaKnown RBP12.11□□□□□ -0.47
RTN3-204ENST00000354497 KIF9Q9HAQ2 790 aa12.11□□□□□ -0.47
RTN3-204ENST00000354497 IL21Q9HBE4 155 aa12.11□□□□□ -0.47
RTN3-204ENST00000354497 DDX19AQ9NUU7 478 aaKnown RBP12.11□□□□□ -0.47
RTN3-204ENST00000354497 TDP1Q9NUW8 608 aa12.11□□□□□ -0.47
RTN3-204ENST00000354497 UBQLN1Q9UMX0 589 aaKnown RBP12.11□□□□□ -0.47
RTN3-204ENST00000354497 MAGED2Q9UNF1 606 aaPredicted RBP12.11□□□□□ -0.47
RTN3-204ENST00000354497 PPEF2O14830 753 aa12.11□□□□□ -0.47
RTN3-204ENST00000354497 ENGP17813 658 aa12.11□□□□□ -0.47
RTN3-204ENST00000354497 TYMPP19971 482 aa12.11□□□□□ -0.47
RTN3-204ENST00000354497 IFNAR2P48551 515 aa12.11□□□□□ -0.47
RTN3-204ENST00000354497 ATXN3P54252 364 aaPredicted RBP12.11□□□□□ -0.47
RTN3-204ENST00000354497 PPP2R3AQ06190 1150 aa12.11□□□□□ -0.47
RTN3-204ENST00000354497 ZNF174Q15697 407 aa12.11□□□□□ -0.47
RTN3-204ENST00000354497 SOWAHCQ53LP3 525 aaPredicted RBP12.11□□□□□ -0.47
RTN3-204ENST00000354497 C2orf27AQ580R0 203 aa12.11□□□□□ -0.47
RTN3-204ENST00000354497 PDZD3Q86UT5 571 aa12.11□□□□□ -0.47
RTN3-204ENST00000354497 HDDC3Q8N4P3 179 aa12.11□□□□□ -0.47
RTN3-204ENST00000354497 SPRYD3Q8NCJ5 442 aa12.11□□□□□ -0.47
RTN3-204ENST00000354497 STKLD1Q8NE28 680 aa12.11□□□□□ -0.47
RTN3-204ENST00000354497 OR10T2Q8NGX3 314 aa12.11□□□□□ -0.47
RTN3-204ENST00000354497 RIN3Q8TB24 985 aa12.11□□□□□ -0.47
RTN3-204ENST00000354497 MRPS31Q92665 395 aaKnown RBP12.11□□□□□ -0.47
RTN3-204ENST00000354497 EZH1Q92800 747 aaPredicted RBP12.11□□□□□ -0.47
RTN3-204ENST00000354497 BICD1Q96G01 975 aa12.11□□□□□ -0.47
RTN3-204ENST00000354497 SENP8Q96LD8 212 aa12.11□□□□□ -0.47
RTN3-204ENST00000354497 DRC1Q96MC2 740 aa12.11□□□□□ -0.47
RTN3-204ENST00000354497 ECT2Q9H8V3 914 aa12.11□□□□□ -0.47
RTN3-204ENST00000354497 TRPC7Q9HCX4 862 aa12.11□□□□□ -0.47
RTN3-204ENST00000354497 DUS2Q9NX74 493 aaKnown RBP12.11□□□□□ -0.47
RTN3-204ENST00000354497 ABI2Q9NYB9 513 aaPredicted RBP12.11□□□□□ -0.47
RTN3-204ENST00000354497 CHMP5Q9NZZ3 219 aa12.11□□□□□ -0.47
RTN3-204ENST00000354497 WNT6Q9Y6F9 365 aa12.11□□□□□ -0.47
RTN3-204ENST00000354497 AKAP13Q12802 2813 aa12.1□□□□□ -0.47
RTN3-204ENST00000354497 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa12.1□□□□□ -0.47
RTN3-204ENST00000354497 SFI1A8K8P3 1242 aa12.1□□□□□ -0.47
RTN3-204ENST00000354497 E9PMD0 336 aa12.1□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 56.6 ms