RNA–Protein interactions for RNA: ENST00000354098.7

SHMT1-203, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best) BASIC

Gene SHMT1, Length 1,656 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-203ENST00000354098 B3GALNT2Q8NCR0 500 aa23.62■■□□□ 1.37
SHMT1-203ENST00000354098 PCMTD1Q96MG8 357 aaPredicted RBP23.62■■□□□ 1.37
SHMT1-203ENST00000354098 NT5C1AQ9BXI3 368 aa23.62■■□□□ 1.37
SHMT1-203ENST00000354098 CRISPLD1Q9H336 500 aa23.62■■□□□ 1.37
SHMT1-203ENST00000354098 MAN1C1Q9NR34 630 aa23.62■■□□□ 1.37
SHMT1-203ENST00000354098 AFF4Q9UHB7 1163 aaKnown RBP23.62■■□□□ 1.37
SHMT1-203ENST00000354098 FBXW11Q9UKB1 542 aa23.62■■□□□ 1.37
SHMT1-203ENST00000354098 RAD23BP54727 409 aa23.61■■□□□ 1.37
SHMT1-203ENST00000354098 MFAP3P55082 362 aa23.61■■□□□ 1.37
SHMT1-203ENST00000354098 COL19A1Q14993 1142 aa23.61■■□□□ 1.37
SHMT1-203ENST00000354098 SKIV2LQ15477 1246 aaKnown RBP23.61■■□□□ 1.37
SHMT1-203ENST00000354098 CRYBG2Q8N1P7 616 aa23.61■■□□□ 1.37
SHMT1-203ENST00000354098 TTC9BQ8N6N2 239 aa23.61■■□□□ 1.37
SHMT1-203ENST00000354098 C12orf29Q8N999 325 aa23.61■■□□□ 1.37
SHMT1-203ENST00000354098 MAFAQ8NHW3 353 aaPredicted RBP23.61■■□□□ 1.37
SHMT1-203ENST00000354098 GANQ9H2C0 597 aa23.61■■□□□ 1.37
SHMT1-203ENST00000354098 PLCB1Q9NQ66 1216 aa23.61■■□□□ 1.37
SHMT1-203ENST00000354098 PCDHB4Q9Y5E5 795 aa23.61■■□□□ 1.37
SHMT1-203ENST00000354098 FHOD1Q9Y613 1164 aa23.61■■□□□ 1.37
SHMT1-203ENST00000354098 RNF225M0QZC1 329 aaPredicted RBP23.6■■□□□ 1.37
SHMT1-203ENST00000354098 UCHL3P15374 230 aa23.6■■□□□ 1.37
SHMT1-203ENST00000354098 LTBRP36941 435 aa23.6■■□□□ 1.37
SHMT1-203ENST00000354098 DUSP4Q13115 394 aa23.6■■□□□ 1.37
SHMT1-203ENST00000354098 TMEM270Q6UE05 265 aa23.6■■□□□ 1.37
SHMT1-203ENST00000354098 TMEM184AQ6ZMB5 413 aa23.6■■□□□ 1.37
SHMT1-203ENST00000354098 SLC4A11Q8NBS3 891 aa23.6■■□□□ 1.37
SHMT1-203ENST00000354098 MYCBPAPQ8TBZ2 947 aa23.6■■□□□ 1.37
SHMT1-203ENST00000354098 PABPC5Q96DU9 382 aaKnown RBP23.6■■□□□ 1.37
SHMT1-203ENST00000354098 PCED1BQ96HM7 432 aa23.6■■□□□ 1.37
SHMT1-203ENST00000354098 TNIP3Q96KP6 325 aa23.6■■□□□ 1.37
SHMT1-203ENST00000354098 XPO4Q9C0E2 1151 aaKnown RBP23.6■■□□□ 1.37
SHMT1-203ENST00000354098 CYP4F11Q9HBI6 524 aa23.6■■□□□ 1.37
SHMT1-203ENST00000354098 CLEC1BQ9P126 229 aa23.6■■□□□ 1.37
SHMT1-203ENST00000354098 SLC27A5Q9Y2P5 690 aa23.6■■□□□ 1.37
SHMT1-203ENST00000354098 XIRP2A4UGR9 3374 aa23.6■■□□□ 1.37
SHMT1-203ENST00000354098 AP5Z1O43299 807 aa23.6■■□□□ 1.37
SHMT1-203ENST00000354098 TBX10O75333 385 aa23.6■■□□□ 1.37
SHMT1-203ENST00000354098 C1RP00736 705 aa23.6■■□□□ 1.37
SHMT1-203ENST00000354098 YWHAEP62258 255 aaKnown RBP23.6■■□□□ 1.37
SHMT1-203ENST00000354098 TTC39CQ8N584 583 aa23.6■■□□□ 1.37
SHMT1-203ENST00000354098 FEZF2Q8TBJ5 459 aa23.6■■□□□ 1.37
SHMT1-203ENST00000354098 MYLPFQ96A32 169 aa23.6■■□□□ 1.37
SHMT1-203ENST00000354098 TMEM176AQ96HP8 235 aa23.6■■□□□ 1.37
SHMT1-203ENST00000354098 NAA15Q9BXJ9 866 aaKnown RBP23.6■■□□□ 1.37
SHMT1-203ENST00000354098 RHOBTB2Q9BYZ6 727 aa23.6■■□□□ 1.37
SHMT1-203ENST00000354098 FAM124BQ9H5Z6 455 aaPredicted RBP23.6■■□□□ 1.37
SHMT1-203ENST00000354098 ABI2Q9NYB9 513 aaPredicted RBP23.6■■□□□ 1.37
SHMT1-203ENST00000354098 SPTBN5Q9NRC6 3674 aaKnown RBP23.59■■□□□ 1.37
SHMT1-203ENST00000354098 NCK2O43639 380 aa23.59■■□□□ 1.37
SHMT1-203ENST00000354098 PLCB2Q00722 1185 aa23.59■■□□□ 1.37
SHMT1-203ENST00000354098 CYP27A1Q02318 531 aa23.59■■□□□ 1.37
SHMT1-203ENST00000354098 ENOSF1Q7L5Y1 443 aa23.59■■□□□ 1.37
SHMT1-203ENST00000354098 C12orf76Q8N812 135 aaPredicted RBP23.59■■□□□ 1.37
SHMT1-203ENST00000354098 CASP10Q92851 521 aa23.59■■□□□ 1.37
SHMT1-203ENST00000354098 PLEKHA4Q9H4M7 779 aa23.59■■□□□ 1.37
SHMT1-203ENST00000354098 FSD2A1L4K1 749 aa23.58■■□□□ 1.37
SHMT1-203ENST00000354098 RFPL2O75678 378 aa23.58■■□□□ 1.37
SHMT1-203ENST00000354098 CALCAP01258 141 aa23.58■■□□□ 1.37
SHMT1-203ENST00000354098 PNMA6AP0CW24 399 aaPredicted RBP23.58■■□□□ 1.37
SHMT1-203ENST00000354098 ELF1P32519 619 aa23.58■■□□□ 1.37
SHMT1-203ENST00000354098 POLR2FP61218 127 aaKnown RBP23.58■■□□□ 1.37
SHMT1-203ENST00000354098 RAPGEF1Q13905 1077 aa23.58■■□□□ 1.37
SHMT1-203ENST00000354098 NFE2Q16621 373 aaPredicted RBP23.58■■□□□ 1.37
SHMT1-203ENST00000354098 TCEAL8Q8IYN2 117 aa23.58■■□□□ 1.37
SHMT1-203ENST00000354098 NEK11Q8NG66 645 aa23.58■■□□□ 1.37
SHMT1-203ENST00000354098 SLC7A14Q8TBB6 771 aa23.58■■□□□ 1.37
SHMT1-203ENST00000354098 JAKMIP2Q96AA8 810 aa23.58■■□□□ 1.37
SHMT1-203ENST00000354098 FAM81BQ96LP2 452 aa23.58■■□□□ 1.37
SHMT1-203ENST00000354098 HEXIM2Q96MH2 286 aaKnown RBP23.58■■□□□ 1.37
SHMT1-203ENST00000354098 B3GNT5Q9BYG0 378 aa23.58■■□□□ 1.37
SHMT1-203ENST00000354098 FAM49BQ9NUQ9 324 aa23.58■■□□□ 1.37
SHMT1-203ENST00000354098 PCDHB5Q9Y5E4 795 aa23.58■■□□□ 1.37
SHMT1-203ENST00000354098 A0A1W2PQC6 194 aa23.57■■□□□ 1.36
SHMT1-203ENST00000354098 CLDN5O00501 218 aa23.57■■□□□ 1.36
SHMT1-203ENST00000354098 PRRG1O14668 218 aa23.57■■□□□ 1.36
SHMT1-203ENST00000354098 SOAT2O75908 522 aa23.57■■□□□ 1.36
SHMT1-203ENST00000354098 C8AP07357 584 aa23.57■■□□□ 1.36
SHMT1-203ENST00000354098 CCDC130P13994 396 aa23.57■■□□□ 1.36
SHMT1-203ENST00000354098 CYP2F1P24903 491 aa23.57■■□□□ 1.36
SHMT1-203ENST00000354098 SPATA2LQ8IUW3 424 aaPredicted RBP23.57■■□□□ 1.36
SHMT1-203ENST00000354098 RBBP8NLQ8NC74 664 aaPredicted RBP23.57■■□□□ 1.36
SHMT1-203ENST00000354098 SHC3Q92529 594 aa23.57■■□□□ 1.36
SHMT1-203ENST00000354098 APOL5Q9BWW9 433 aa23.57■■□□□ 1.36
SHMT1-203ENST00000354098 GPR88Q9GZN0 384 aa23.57■■□□□ 1.36
SHMT1-203ENST00000354098 CNTN6Q9UQ52 1028 aa23.57■■□□□ 1.36
SHMT1-203ENST00000354098 FOXN3O00409 490 aaPredicted RBP23.57■■□□□ 1.36
SHMT1-203ENST00000354098 KRT5P13647 590 aa23.57■■□□□ 1.36
SHMT1-203ENST00000354098 PBX1P40424 430 aa23.57■■□□□ 1.36
SHMT1-203ENST00000354098 SMARCB1Q12824 385 aa23.57■■□□□ 1.36
SHMT1-203ENST00000354098 DRAP1Q14919 205 aaPredicted RBP23.57■■□□□ 1.36
SHMT1-203ENST00000354098 MAPRE1Q15691 268 aaKnown RBP23.57■■□□□ 1.36
SHMT1-203ENST00000354098 LIN9Q5TKA1 542 aa23.57■■□□□ 1.36
SHMT1-203ENST00000354098 ANKRD54Q6NXT1 300 aa23.57■■□□□ 1.36
SHMT1-203ENST00000354098 SYCE2Q6PIF2 218 aa23.57■■□□□ 1.36
SHMT1-203ENST00000354098 PAQR9Q6ZVX9 377 aa23.57■■□□□ 1.36
SHMT1-203ENST00000354098 SPPL2BQ8TCT7 592 aa23.57■■□□□ 1.36
SHMT1-203ENST00000354098 HDAC7Q8WUI4 952 aa23.57■■□□□ 1.36
SHMT1-203ENST00000354098 NLRC4Q9NPP4 1024 aa23.57■■□□□ 1.36
SHMT1-203ENST00000354098 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP23.56■■□□□ 1.36
SHMT1-203ENST00000354098 USP8P40818 1118 aa23.56■■□□□ 1.36
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms