RNA–Protein interactions for RNA: ENST00000345005.8

CLK3-201, Transcript of CDC like kinase 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLK3, Length 1,846 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-201ENST00000345005 UBXN11Q5T124 520 aa13.57□□□□□ -0.24
CLK3-201ENST00000345005 MON1BQ7L1V2 547 aa13.57□□□□□ -0.24
CLK3-201ENST00000345005 FAM228AQ86W67 206 aa13.57□□□□□ -0.24
CLK3-201ENST00000345005 ZBTB9Q96C00 473 aa13.57□□□□□ -0.24
CLK3-201ENST00000345005 NXF3Q9H4D5 531 aaKnown RBP13.57□□□□□ -0.24
CLK3-201ENST00000345005 UBQLN1Q9UMX0 589 aaKnown RBP13.57□□□□□ -0.24
CLK3-201ENST00000345005 PCDHGC3Q9UN70 934 aa13.57□□□□□ -0.24
CLK3-201ENST00000345005 NOC2LQ9Y3T9 749 aaKnown RBP13.57□□□□□ -0.24
CLK3-201ENST00000345005 HES2Q9Y543 173 aa13.57□□□□□ -0.24
CLK3-201ENST00000345005 BHMG1C9JSJ3 638 aaPredicted RBP13.57□□□□□ -0.24
CLK3-201ENST00000345005 PGRMC1O00264 195 aaKnown RBP13.57□□□□□ -0.24
CLK3-201ENST00000345005 TLR3O15455 904 aaKnown RBP13.57□□□□□ -0.24
CLK3-201ENST00000345005 ATMINO43313 823 aaPredicted RBP13.57□□□□□ -0.24
CLK3-201ENST00000345005 CD4P01730 458 aa13.57□□□□□ -0.24
CLK3-201ENST00000345005 CFHP08603 1231 aa13.57□□□□□ -0.24
CLK3-201ENST00000345005 GUCY2FP51841 1108 aa13.57□□□□□ -0.24
CLK3-201ENST00000345005 HLTFQ14527 1009 aaKnown RBP eCLIP13.57□□□□□ -0.24
CLK3-201ENST00000345005 MESDQ14696 234 aa13.57□□□□□ -0.24
CLK3-201ENST00000345005 ZNF394Q53GI3 561 aa13.57□□□□□ -0.24
CLK3-201ENST00000345005 KCTD16Q68DU8 428 aa13.57□□□□□ -0.24
CLK3-201ENST00000345005 TWF2Q6IBS0 349 aaKnown RBP13.57□□□□□ -0.24
CLK3-201ENST00000345005 TMEM35BQ8NCS4 154 aa13.57□□□□□ -0.24
CLK3-201ENST00000345005 CENPTQ96BT3 561 aa13.57□□□□□ -0.24
CLK3-201ENST00000345005 MS4A14Q96JA4 679 aa13.57□□□□□ -0.24
CLK3-201ENST00000345005 NAP1L3Q99457 506 aaPredicted RBP13.57□□□□□ -0.24
CLK3-201ENST00000345005 BUD13Q9BRD0 619 aaKnown RBP eCLIP13.57□□□□□ -0.242e-8■■■□□ 17.6
CLK3-201ENST00000345005 APOL6Q9BWW8 343 aa13.57□□□□□ -0.24
CLK3-201ENST00000345005 CHST12Q9NRB3 414 aa13.57□□□□□ -0.24
CLK3-201ENST00000345005 WBP1LQ9NX94 342 aa13.57□□□□□ -0.24
CLK3-201ENST00000345005 ADAM22Q9P0K1 906 aa13.57□□□□□ -0.24
CLK3-201ENST00000345005 PARP2Q9UGN5 583 aa13.57□□□□□ -0.24
CLK3-201ENST00000345005 FRMPD3Q5JV73 1810 aa13.56□□□□□ -0.24
CLK3-201ENST00000345005 CEP104O60308 925 aa13.56□□□□□ -0.24
CLK3-201ENST00000345005 CILPO75339 1184 aa13.56□□□□□ -0.24
CLK3-201ENST00000345005 KCNE1P15382 129 aa13.56□□□□□ -0.24
CLK3-201ENST00000345005 ATF7P17544 494 aaPredicted RBP13.56□□□□□ -0.24
CLK3-201ENST00000345005 GBP1P32455 592 aa13.56□□□□□ -0.24
CLK3-201ENST00000345005 RAP1GAPP47736 663 aa13.56□□□□□ -0.24
CLK3-201ENST00000345005 RAD23BP54727 409 aa13.56□□□□□ -0.24
CLK3-201ENST00000345005 CDH8P55286 799 aa13.56□□□□□ -0.24
CLK3-201ENST00000345005 PRMT2P55345 433 aa13.56□□□□□ -0.24
CLK3-201ENST00000345005 PTPN11Q06124 597 aaPredicted RBP13.56□□□□□ -0.24
CLK3-201ENST00000345005 XKR4Q5GH76 650 aa13.56□□□□□ -0.24
CLK3-201ENST00000345005 C6orf89Q6UWU4 347 aa13.56□□□□□ -0.24
CLK3-201ENST00000345005 PASD1Q8IV76 773 aa13.56□□□□□ -0.24
CLK3-201ENST00000345005 LRRC52Q8N7C0 313 aa13.56□□□□□ -0.24
CLK3-201ENST00000345005 UBL4BQ8N7F7 174 aa13.56□□□□□ -0.24
CLK3-201ENST00000345005 ZMAT2Q96NC0 199 aaKnown RBP13.56□□□□□ -0.24
CLK3-201ENST00000345005 SENP6Q9GZR1 1112 aaPredicted RBP13.56□□□□□ -0.24
CLK3-201ENST00000345005 SDCBP2Q9H190 292 aa13.56□□□□□ -0.24
CLK3-201ENST00000345005 WNT8AQ9H1J5 351 aa13.56□□□□□ -0.24
CLK3-201ENST00000345005 MRPL47Q9HD33 250 aaKnown RBP13.56□□□□□ -0.24
CLK3-201ENST00000345005 KIAA1257Q9ULG3 409 aa13.56□□□□□ -0.24
CLK3-201ENST00000345005 ST3GAL5Q9UNP4 418 aa13.56□□□□□ -0.24
CLK3-201ENST00000345005 IPPQ9Y573 584 aa13.56□□□□□ -0.24
CLK3-201ENST00000345005 SMIM28A0A1B0GU29 152 aa13.55□□□□□ -0.24
CLK3-201ENST00000345005 TMEM110-MUSTN1A8MSY1 372 aa13.55□□□□□ -0.24
CLK3-201ENST00000345005 E7EVH7 732 aa13.55□□□□□ -0.24
CLK3-201ENST00000345005 GPR182O15218 404 aa13.55□□□□□ -0.24
CLK3-201ENST00000345005 DDX3YO15523 660 aaKnown RBP13.55□□□□□ -0.24
CLK3-201ENST00000345005 RAD51CO43502 376 aa13.55□□□□□ -0.24
CLK3-201ENST00000345005 FKTNO75072 461 aa13.55□□□□□ -0.24
CLK3-201ENST00000345005 CHRNA1P02708 482 aa13.55□□□□□ -0.24
CLK3-201ENST00000345005 CALB1P05937 261 aa13.55□□□□□ -0.24
CLK3-201ENST00000345005 FAM153BP0C7A2 387 aa13.55□□□□□ -0.24
CLK3-201ENST00000345005 AKAP5P24588 427 aa13.55□□□□□ -0.24
CLK3-201ENST00000345005 CDH5P33151 784 aaPredicted RBP13.55□□□□□ -0.24
CLK3-201ENST00000345005 CTNNA1P35221 906 aaKnown RBP13.55□□□□□ -0.24
CLK3-201ENST00000345005 GUCY1A3Q02108 690 aa13.55□□□□□ -0.24
CLK3-201ENST00000345005 PTPROQ16827 1216 aa13.55□□□□□ -0.24
CLK3-201ENST00000345005 FAM153CQ494X1 144 aa13.55□□□□□ -0.24
CLK3-201ENST00000345005 RNF187Q5TA31 235 aaPredicted RBP13.55□□□□□ -0.24
CLK3-201ENST00000345005 HACE1Q8IYU2 909 aa13.55□□□□□ -0.24
CLK3-201ENST00000345005 RASGEF1CQ8N431 466 aa13.55□□□□□ -0.24
CLK3-201ENST00000345005 LHX5Q9H2C1 402 aa13.55□□□□□ -0.24
CLK3-201ENST00000345005 SMYD3Q9H7B4 428 aa13.55□□□□□ -0.24
CLK3-201ENST00000345005 EHD2Q9NZN4 543 aa13.55□□□□□ -0.24
CLK3-201ENST00000345005 FAM153AQ9UHL3 310 aa13.55□□□□□ -0.24
CLK3-201ENST00000345005 TTC7AQ9ULT0 858 aaPredicted RBP13.55□□□□□ -0.24
CLK3-201ENST00000345005 BARX2Q9UMQ3 279 aaPredicted RBP13.55□□□□□ -0.24
CLK3-201ENST00000345005 SCINQ9Y6U3 715 aa13.55□□□□□ -0.24
CLK3-201ENST00000345005 C5orf60A6NFR6 353 aa13.55□□□□□ -0.24
CLK3-201ENST00000345005 TRAPPC3O43617 180 aa13.55□□□□□ -0.24
CLK3-201ENST00000345005 CD19P15391 556 aa13.55□□□□□ -0.24
CLK3-201ENST00000345005 RRM1P23921 792 aa13.55□□□□□ -0.24
CLK3-201ENST00000345005 SSTR3P32745 418 aaPredicted RBP13.55□□□□□ -0.24
CLK3-201ENST00000345005 HSD17B3P37058 310 aa13.55□□□□□ -0.24
CLK3-201ENST00000345005 ACLYP53396 1101 aa13.55□□□□□ -0.24
CLK3-201ENST00000345005 PPP2R2AP63151 447 aa13.55□□□□□ -0.24
CLK3-201ENST00000345005 MGAT3Q09327 533 aa13.55□□□□□ -0.24
CLK3-201ENST00000345005 INCA1Q0VD86 236 aa13.55□□□□□ -0.24
CLK3-201ENST00000345005 ITGA7Q13683 1181 aa13.55□□□□□ -0.24
CLK3-201ENST00000345005 ODF2Q5BJF6 829 aa13.55□□□□□ -0.24
CLK3-201ENST00000345005 FBXW10Q5XX13 1052 aa13.55□□□□□ -0.24
CLK3-201ENST00000345005 TMEM130Q8N3G9 435 aa13.55□□□□□ -0.24
CLK3-201ENST00000345005 SH2D3CQ8N5H7 860 aa13.55□□□□□ -0.24
CLK3-201ENST00000345005 SLC4A11Q8NBS3 891 aa13.55□□□□□ -0.24
CLK3-201ENST00000345005 SMG8Q8ND04 991 aaKnown RBP13.55□□□□□ -0.24
CLK3-201ENST00000345005 SLAIN1Q8ND83 568 aa13.55□□□□□ -0.24
CLK3-201ENST00000345005 TFAP2BQ92481 460 aa13.55□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms