RNA–Protein interactions for RNA: ENST00000341307.6

RTN3-203, Transcript of reticulon 3, humanhuman

TSL 2 BASIC

Gene RTN3, Length 2,524 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-203ENST00000341307 DNAJC3Q13217 504 aa12.45□□□□□ -0.42
RTN3-203ENST00000341307 RFX8Q6ZV50 586 aa12.45□□□□□ -0.42
RTN3-203ENST00000341307 RAPH1Q70E73 1250 aa12.45□□□□□ -0.42
RTN3-203ENST00000341307 MOB2Q70IA6 237 aa12.45□□□□□ -0.42
RTN3-203ENST00000341307 SFR1Q86XK3 245 aa12.45□□□□□ -0.42
RTN3-203ENST00000341307 PDSS2Q86YH6 399 aa12.45□□□□□ -0.42
RTN3-203ENST00000341307 ITPKCQ96DU7 683 aa12.45□□□□□ -0.42
RTN3-203ENST00000341307 PTCD3Q96EY7 689 aaKnown RBP12.45□□□□□ -0.42
RTN3-203ENST00000341307 VPS50Q96JG6 964 aa12.45□□□□□ -0.42
RTN3-203ENST00000341307 TANGO6Q9C0B7 1094 aa12.45□□□□□ -0.42
RTN3-203ENST00000341307 PKD2L1Q9P0L9 805 aa12.45□□□□□ -0.42
RTN3-203ENST00000341307 COL20A1Q9P218 1284 aa12.45□□□□□ -0.42
RTN3-203ENST00000341307 PPP1R9AQ9ULJ8 1098 aa12.45□□□□□ -0.42
RTN3-203ENST00000341307 NR2E3Q9Y5X4 410 aa12.45□□□□□ -0.42
RTN3-203ENST00000341307 ABCB11O95342 1321 aa12.44□□□□□ -0.42
RTN3-203ENST00000341307 SCN4AP35499 1836 aa12.44□□□□□ -0.42
RTN3-203ENST00000341307 ZBTB39O15060 712 aa12.44□□□□□ -0.42
RTN3-203ENST00000341307 MAGEB2O15479 319 aa12.44□□□□□ -0.42
RTN3-203ENST00000341307 TIMM44O43615 452 aa12.44□□□□□ -0.42
RTN3-203ENST00000341307 HNRNPCL1O60812 293 aaKnown RBP12.44□□□□□ -0.42
RTN3-203ENST00000341307 SERPING1P05155 500 aa12.44□□□□□ -0.42
RTN3-203ENST00000341307 RPL5P46777 297 aaKnown RBP12.44□□□□□ -0.42
RTN3-203ENST00000341307 SLC12A3P55017 1021 aa12.44□□□□□ -0.42
RTN3-203ENST00000341307 MSLNQ13421 630 aaPredicted RBP12.44□□□□□ -0.42
RTN3-203ENST00000341307 MED21Q13503 144 aa12.44□□□□□ -0.42
RTN3-203ENST00000341307 TNFAIP1Q13829 316 aa12.44□□□□□ -0.42
RTN3-203ENST00000341307 CTTNQ14247 550 aaKnown RBP12.44□□□□□ -0.42
RTN3-203ENST00000341307 MYLK3Q32MK0 819 aa12.44□□□□□ -0.42
RTN3-203ENST00000341307 UGT2A3Q6UWM9 527 aa12.44□□□□□ -0.42
RTN3-203ENST00000341307 CLNKQ7Z7G1 428 aa12.44□□□□□ -0.42
RTN3-203ENST00000341307 U2AF1L4Q8WU68 220 aaKnown RBP12.44□□□□□ -0.42
RTN3-203ENST00000341307 CCDC127Q96BQ5 260 aa12.44□□□□□ -0.42
RTN3-203ENST00000341307 RAVER2Q9HCJ3 691 aaKnown RBP12.44□□□□□ -0.42
RTN3-203ENST00000341307 ERVK-5Q9HDB9 667 aa12.44□□□□□ -0.42
RTN3-203ENST00000341307 ARL8BQ9NVJ2 186 aa12.44□□□□□ -0.42
RTN3-203ENST00000341307 HEMK1Q9Y5R4 338 aaPredicted RBP12.44□□□□□ -0.42
RTN3-203ENST00000341307 SEC23IPQ9Y6Y8 1000 aaKnown RBP12.44□□□□□ -0.42
RTN3-203ENST00000341307 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP12.44□□□□□ -0.42
RTN3-203ENST00000341307 BTNL10A8MVZ5 291 aa12.44□□□□□ -0.42
RTN3-203ENST00000341307 AP1G1O43747 822 aa12.44□□□□□ -0.42
RTN3-203ENST00000341307 DKC1O60832 514 aaKnown RBP eCLIP12.44□□□□□ -0.42
RTN3-203ENST00000341307 TRMUO75648 421 aaKnown RBP12.44□□□□□ -0.42
RTN3-203ENST00000341307 KRT18P05783 430 aaKnown RBP12.44□□□□□ -0.42
RTN3-203ENST00000341307 CYP3A4P08684 503 aa12.44□□□□□ -0.42
RTN3-203ENST00000341307 ARP10275 920 aa12.44□□□□□ -0.42
RTN3-203ENST00000341307 CYP2C9P11712 490 aa12.44□□□□□ -0.42
RTN3-203ENST00000341307 WDR4P57081 412 aaKnown RBP12.44□□□□□ -0.42
RTN3-203ENST00000341307 STRN3Q13033 797 aa12.44□□□□□ -0.42
RTN3-203ENST00000341307 ZNF568Q3ZCX4 644 aa12.44□□□□□ -0.42
RTN3-203ENST00000341307 SLC45A4Q5BKX6 768 aa12.44□□□□□ -0.42
RTN3-203ENST00000341307 HERC4Q5GLZ8 1057 aaPredicted RBP12.44□□□□□ -0.42
RTN3-203ENST00000341307 ARHGEF18Q6ZSZ5 1173 aa12.44□□□□□ -0.42
RTN3-203ENST00000341307 MTDHQ86UE4 582 aaKnown RBP12.44□□□□□ -0.42
RTN3-203ENST00000341307 FAM160B2Q86V87 743 aa12.44□□□□□ -0.42
RTN3-203ENST00000341307 CROCCP3Q8IVE0 287 aa12.44□□□□□ -0.42
RTN3-203ENST00000341307 OR6Y1Q8NGX8 325 aa12.44□□□□□ -0.42
RTN3-203ENST00000341307 SH3GL1Q99961 368 aa12.44□□□□□ -0.42
RTN3-203ENST00000341307 HGH1Q9BTY7 390 aa12.44□□□□□ -0.42
RTN3-203ENST00000341307 NDEL1Q9GZM8 345 aa12.44□□□□□ -0.42
RTN3-203ENST00000341307 SENP6Q9GZR1 1112 aaPredicted RBP12.44□□□□□ -0.42
RTN3-203ENST00000341307 FAF1Q9UNN5 650 aaPredicted RBP12.44□□□□□ -0.42
RTN3-203ENST00000341307 DMTF1Q9Y222 760 aa12.44□□□□□ -0.42
RTN3-203ENST00000341307 FRMD4BQ9Y2L6 1034 aa12.44□□□□□ -0.42
RTN3-203ENST00000341307 MRPL11Q9Y3B7 192 aaKnown RBP12.44□□□□□ -0.42
RTN3-203ENST00000341307 A8MXQ7 604 aa12.43□□□□□ -0.42
RTN3-203ENST00000341307 TBX3O15119 743 aa12.43□□□□□ -0.42
RTN3-203ENST00000341307 FGGP02679 453 aa12.43□□□□□ -0.42
RTN3-203ENST00000341307 HSPA8P11142 646 aaKnown RBP12.43□□□□□ -0.42
RTN3-203ENST00000341307 UQCRBP14927 111 aa12.43□□□□□ -0.42
RTN3-203ENST00000341307 RPA1P27694 616 aa12.43□□□□□ -0.42
RTN3-203ENST00000341307 CASP5P51878 434 aa12.43□□□□□ -0.42
RTN3-203ENST00000341307 DRG2P55039 364 aaKnown RBP12.43□□□□□ -0.42
RTN3-203ENST00000341307 IGBP1P78318 339 aa12.43□□□□□ -0.42
RTN3-203ENST00000341307 PUS10Q3MIT2 529 aaKnown RBP12.43□□□□□ -0.42
RTN3-203ENST00000341307 SFT2D3Q587I9 215 aa12.43□□□□□ -0.42
RTN3-203ENST00000341307 FAM26FQ5R3K3 315 aa12.43□□□□□ -0.42
RTN3-203ENST00000341307 SNRNP48Q6IEG0 339 aaKnown RBP12.43□□□□□ -0.42
RTN3-203ENST00000341307 JAMLQ86YT9 394 aa12.43□□□□□ -0.42
RTN3-203ENST00000341307 PASD1Q8IV76 773 aa12.43□□□□□ -0.42
RTN3-203ENST00000341307 GUF1Q8N442 669 aaKnown RBP12.43□□□□□ -0.42
RTN3-203ENST00000341307 WNK4Q96J92 1243 aa12.43□□□□□ -0.42
RTN3-203ENST00000341307 FAM20AQ96MK3 541 aa12.43□□□□□ -0.42
RTN3-203ENST00000341307 SERPINB12Q96P63 405 aa12.43□□□□□ -0.42
RTN3-203ENST00000341307 EIF2AK1Q9BQI3 630 aaKnown RBP12.43□□□□□ -0.42
RTN3-203ENST00000341307 BMP2KQ9NSY1 1161 aaPredicted RBP12.43□□□□□ -0.42
RTN3-203ENST00000341307 TRAF3IP3Q9Y228 551 aa12.43□□□□□ -0.42
RTN3-203ENST00000341307 RSPH10B2B2RC85 870 aa12.43□□□□□ -0.42
RTN3-203ENST00000341307 DDX39AO00148 427 aaKnown RBP12.43□□□□□ -0.42
RTN3-203ENST00000341307 GYG2O15488 501 aa12.43□□□□□ -0.42
RTN3-203ENST00000341307 TFPTP0C1Z6 253 aa12.43□□□□□ -0.42
RTN3-203ENST00000341307 RSPH10BP0C881 870 aa12.43□□□□□ -0.42
RTN3-203ENST00000341307 ALAS1P13196 640 aa12.43□□□□□ -0.42
RTN3-203ENST00000341307 RARGP13631 454 aa12.43□□□□□ -0.42
RTN3-203ENST00000341307 RPL21P46778 160 aaKnown RBP12.43□□□□□ -0.42
RTN3-203ENST00000341307 ERFP50548 548 aa12.43□□□□□ -0.42
RTN3-203ENST00000341307 CHN2P52757 468 aa12.43□□□□□ -0.42
RTN3-203ENST00000341307 DLG1Q12959 904 aa12.43□□□□□ -0.42
RTN3-203ENST00000341307 SPP2Q13103 211 aa12.43□□□□□ -0.42
RTN3-203ENST00000341307 ZNF423Q2M1K9 1284 aa12.43□□□□□ -0.42
RTN3-203ENST00000341307 NLRP9Q7RTR0 991 aa12.43□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms