RNA–Protein interactions for RNA: ENST00000338585.6

MCF2-201, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene MCF2, Length 2,826 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-201ENST00000338585 SENP8Q96LD8 212 aa4.39□□□□□ -1.71
MCF2-201ENST00000338585 TSPAN18Q96SJ8 248 aa4.39□□□□□ -1.71
MCF2-201ENST00000338585 CPXM1Q96SM3 734 aa4.39□□□□□ -1.71
MCF2-201ENST00000338585 WNT8AQ9H1J5 351 aa4.39□□□□□ -1.71
MCF2-201ENST00000338585 SLC38A7Q9NVC3 462 aa4.39□□□□□ -1.71
MCF2-201ENST00000338585 GDAP2Q9NXN4 497 aa4.39□□□□□ -1.71
MCF2-201ENST00000338585 PLA2G2EQ9NZK7 142 aa4.39□□□□□ -1.71
MCF2-201ENST00000338585 ANAPC7Q9UJX3 599 aa4.39□□□□□ -1.71
MCF2-201ENST00000338585 TSPAN16Q9UKR8 245 aa4.39□□□□□ -1.71
MCF2-201ENST00000338585 TCRBV5S1A1TA0A578 114 aa4.39□□□□□ -1.71
MCF2-201ENST00000338585 GOLGA8SH3BPF8 625 aa4.39□□□□□ -1.71
MCF2-201ENST00000338585 CYB561D2O14569 222 aa4.39□□□□□ -1.71
MCF2-201ENST00000338585 DDX3YO15523 660 aaKnown RBP4.39□□□□□ -1.71
MCF2-201ENST00000338585 MED7O43513 233 aa4.39□□□□□ -1.71
MCF2-201ENST00000338585 HUS1O60921 280 aa4.39□□□□□ -1.71
MCF2-201ENST00000338585 ERBB2P04626 1255 aa4.39□□□□□ -1.71
MCF2-201ENST00000338585 PFKMP08237 780 aa4.39□□□□□ -1.71
MCF2-201ENST00000338585 CCDC130P13994 396 aa4.39□□□□□ -1.71
MCF2-201ENST00000338585 PRLRP16471 622 aa4.39□□□□□ -1.71
MCF2-201ENST00000338585 TCP1P17987 556 aaKnown RBP4.39□□□□□ -1.71
MCF2-201ENST00000338585 TKTP29401 623 aaKnown RBP4.39□□□□□ -1.71
MCF2-201ENST00000338585 CDH5P33151 784 aaPredicted RBP4.39□□□□□ -1.71
MCF2-201ENST00000338585 CYP2C18P33260 490 aa4.39□□□□□ -1.71
MCF2-201ENST00000338585 GNL1P36915 607 aaPredicted RBP4.39□□□□□ -1.71
MCF2-201ENST00000338585 GPD2P43304 727 aa4.39□□□□□ -1.71
MCF2-201ENST00000338585 BRCC3P46736 316 aa4.39□□□□□ -1.71
MCF2-201ENST00000338585 PSMC1P62191 440 aaKnown RBP4.39□□□□□ -1.71
MCF2-201ENST00000338585 RPL7AP62424 266 aaKnown RBP4.39□□□□□ -1.71
MCF2-201ENST00000338585 C2orf54Q08AI8 447 aa4.39□□□□□ -1.71
MCF2-201ENST00000338585 ZNF211Q13398 564 aaPredicted RBP4.39□□□□□ -1.71
MCF2-201ENST00000338585 CNGA2Q16280 664 aa4.39□□□□□ -1.71
MCF2-201ENST00000338585 UPP1Q16831 310 aa4.39□□□□□ -1.71
MCF2-201ENST00000338585 KCTD19Q17RG1 926 aaPredicted RBP4.39□□□□□ -1.71
MCF2-201ENST00000338585 TIGD5Q53EQ6 642 aa4.39□□□□□ -1.71
MCF2-201ENST00000338585 PLEKHG4Q58EX7 1191 aa4.39□□□□□ -1.71
MCF2-201ENST00000338585 DCAF12L1Q5VU92 463 aa4.39□□□□□ -1.71
MCF2-201ENST00000338585 KIAA0319Q5VV43 1072 aa4.39□□□□□ -1.71
MCF2-201ENST00000338585 PLEKHA7Q6IQ23 1121 aa4.39□□□□□ -1.71
MCF2-201ENST00000338585 C11orf63Q6NUN7 778 aa4.39□□□□□ -1.71
MCF2-201ENST00000338585 AADACL2Q6P093 401 aa4.39□□□□□ -1.71
MCF2-201ENST00000338585 FBXO46Q6PJ61 603 aaPredicted RBP4.39□□□□□ -1.71
MCF2-201ENST00000338585 CD300LGQ6UXG3 332 aa4.39□□□□□ -1.71
MCF2-201ENST00000338585 RSRC2Q7L4I2 434 aaKnown RBP4.39□□□□□ -1.71
MCF2-201ENST00000338585 TTC30AQ86WT1 665 aa4.39□□□□□ -1.71
MCF2-201ENST00000338585 ZNF280BQ86YH2 543 aa4.39□□□□□ -1.71
MCF2-201ENST00000338585 SYCE1Q8N0S2 351 aa4.39□□□□□ -1.71
MCF2-201ENST00000338585 CEP112Q8N8E3 955 aa4.39□□□□□ -1.71
MCF2-201ENST00000338585 APPL2Q8NEU8 664 aa4.39□□□□□ -1.71
MCF2-201ENST00000338585 PGBD4Q96DM1 585 aa4.39□□□□□ -1.71
MCF2-201ENST00000338585 HES6Q96HZ4 224 aa4.39□□□□□ -1.71
MCF2-201ENST00000338585 LHX5Q9H2C1 402 aa4.39□□□□□ -1.71
MCF2-201ENST00000338585 SNX25Q9H3E2 840 aa4.39□□□□□ -1.71
MCF2-201ENST00000338585 HIPK3Q9H422 1215 aa4.39□□□□□ -1.71
MCF2-201ENST00000338585 AVENQ9NQS1 362 aaPredicted RBP4.39□□□□□ -1.71
MCF2-201ENST00000338585 UVRAGQ9P2Y5 699 aa4.39□□□□□ -1.71
MCF2-201ENST00000338585 HCSTQ9UBK5 93 aa4.39□□□□□ -1.71
MCF2-201ENST00000338585 AMFRQ9UKV5 643 aa4.39□□□□□ -1.71
MCF2-201ENST00000338585 ATP11BQ9Y2G3 1177 aa4.39□□□□□ -1.71
MCF2-201ENST00000338585 MKI67P46013 3256 aaKnown RBP4.39□□□□□ -1.71
MCF2-201ENST00000338585 CTAGE15A4D2H0 777 aa4.38□□□□□ -1.71
MCF2-201ENST00000338585 EFCAB8A8MWE9 144 aa4.38□□□□□ -1.71
MCF2-201ENST00000338585 ENPP3O14638 875 aa4.38□□□□□ -1.71
MCF2-201ENST00000338585 B3GAT3O94766 335 aa4.38□□□□□ -1.71
MCF2-201ENST00000338585 DDHD2O94830 711 aa4.38□□□□□ -1.71
MCF2-201ENST00000338585 CTAGE8P0CG41 777 aa4.38□□□□□ -1.71
MCF2-201ENST00000338585 MYBL1P10243 752 aa4.38□□□□□ -1.71
MCF2-201ENST00000338585 COL6A1P12109 1028 aa4.38□□□□□ -1.71
MCF2-201ENST00000338585 SKIP12755 728 aa4.38□□□□□ -1.71
MCF2-201ENST00000338585 ADORA2BP29275 332 aa4.38□□□□□ -1.71
MCF2-201ENST00000338585 RGS7P49802 495 aa4.38□□□□□ -1.71
MCF2-201ENST00000338585 FAM189BP81408 668 aa4.38□□□□□ -1.71
MCF2-201ENST00000338585 MRPS25P82663 173 aaKnown RBP4.38□□□□□ -1.71
MCF2-201ENST00000338585 OGDHQ02218 1023 aa4.38□□□□□ -1.71
MCF2-201ENST00000338585 ZNF252P-AS1Q0IIN9 211 aa4.38□□□□□ -1.71
MCF2-201ENST00000338585 GRIK3Q13003 919 aa4.38□□□□□ -1.71
MCF2-201ENST00000338585 PDCLQ13371 301 aa4.38□□□□□ -1.71
MCF2-201ENST00000338585 TUSC3Q13454 348 aa4.38□□□□□ -1.71
MCF2-201ENST00000338585 TUBB2AQ13885 445 aa4.38□□□□□ -1.71
MCF2-201ENST00000338585 LIN9Q5TKA1 542 aa4.38□□□□□ -1.71
MCF2-201ENST00000338585 LCLAT1Q6UWP7 414 aa4.38□□□□□ -1.71
MCF2-201ENST00000338585 ANKRD33Q7Z3H0 272 aa4.38□□□□□ -1.71
MCF2-201ENST00000338585 DEFB128Q7Z7B8 93 aa4.38□□□□□ -1.71
MCF2-201ENST00000338585 CTAGE6Q86UF2 777 aa4.38□□□□□ -1.71
MCF2-201ENST00000338585 ERICH1Q86X53 443 aa4.38□□□□□ -1.71
MCF2-201ENST00000338585 CTAGE4Q8IX94 777 aa4.38□□□□□ -1.71
MCF2-201ENST00000338585 TOP6BLQ8N6T0 577 aa4.38□□□□□ -1.71
MCF2-201ENST00000338585 ARMC5Q96C12 935 aa4.38□□□□□ -1.71
MCF2-201ENST00000338585 TRIM11Q96F44 468 aa4.38□□□□□ -1.71
MCF2-201ENST00000338585 PAWRQ96IZ0 340 aaKnown RBP4.38□□□□□ -1.71
MCF2-201ENST00000338585 PIWIL1Q96J94 861 aaKnown RBP4.38□□□□□ -1.71
MCF2-201ENST00000338585 MCEEQ96PE7 176 aa4.38□□□□□ -1.71
MCF2-201ENST00000338585 TUBB2BQ9BVA1 445 aa4.38□□□□□ -1.71
MCF2-201ENST00000338585 ZNF518BQ9C0D4 1074 aa4.38□□□□□ -1.71
MCF2-201ENST00000338585 ST7Q9NRC1 585 aa4.38□□□□□ -1.71
MCF2-201ENST00000338585 CEP83Q9Y592 693 aa4.38□□□□□ -1.71
MCF2-201ENST00000338585 TDRD15B5MCY1 1934 aaKnown RBP4.38□□□□□ -1.71
MCF2-201ENST00000338585 LOC101059915A0A1B0GWI6 518 aaPredicted RBP4.38□□□□□ -1.71
MCF2-201ENST00000338585 DCDC2CA8MYV0 355 aa4.38□□□□□ -1.71
MCF2-201ENST00000338585 CLDN5O00501 218 aa4.38□□□□□ -1.71
MCF2-201ENST00000338585 DYNC1I1O14576 645 aa4.38□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms