RNA–Protein interactions for RNA: ENST00000316407.8

USF3-201, Transcript of upstream transcription factor family member 3, humanhuman

APPRIS P2 TSL 5 BASIC

Gene USF3, Length 13,708 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF3-201ENST00000316407 IL5RAQ01344 420 aa9.08□□□□□ -0.96
USF3-201ENST00000316407 TRNAU1APQ9NX07 287 aaKnown RBP9.08□□□□□ -0.96
USF3-201ENST00000316407 SYDE2Q5VT97 1194 aa9.08□□□□□ -0.96
USF3-201ENST00000316407 SLC44A2Q8IWA5 706 aaPredicted RBP9.08□□□□□ -0.96
USF3-201ENST00000316407 ATP6V1HQ9UI12 483 aa9.08□□□□□ -0.96
USF3-201ENST00000316407 PSMD11O00231 422 aa9.08□□□□□ -0.96
USF3-201ENST00000316407 ALOX15P16050 662 aaPredicted RBP9.08□□□□□ -0.96
USF3-201ENST00000316407 PTPN7P35236 360 aa9.08□□□□□ -0.96
USF3-201ENST00000316407 RFX3P48380 749 aa9.08□□□□□ -0.96
USF3-201ENST00000316407 GALCP54803 685 aa9.08□□□□□ -0.96
USF3-201ENST00000316407 NCKAP1LP55160 1127 aa9.08□□□□□ -0.96
USF3-201ENST00000316407 NCALDP61601 193 aa9.08□□□□□ -0.96
USF3-201ENST00000316407 LGALS3BPQ08380 585 aa9.08□□□□□ -0.96
USF3-201ENST00000316407 STX12Q86Y82 276 aa9.08□□□□□ -0.96
USF3-201ENST00000316407 CENPLQ8N0S6 344 aaPredicted RBP9.08□□□□□ -0.96
USF3-201ENST00000316407 AGPAT1Q99943 283 aa9.08□□□□□ -0.96
USF3-201ENST00000316407 STAU2Q9NUL3 570 aaKnown RBP eCLIP9.08□□□□□ -0.96
USF3-201ENST00000316407 PSMD14O00487 310 aa9.08□□□□□ -0.96
USF3-201ENST00000316407 BGNP21810 368 aa9.08□□□□□ -0.96
USF3-201ENST00000316407 ZNF568Q3ZCX4 644 aa9.08□□□□□ -0.96
USF3-201ENST00000316407 NECAB2Q7Z6G3 386 aa9.08□□□□□ -0.96
USF3-201ENST00000316407 SUGP1Q8IWZ8 645 aaKnown RBP9.08□□□□□ -0.96
USF3-201ENST00000316407 ZBTB38Q8NAP3 1195 aaPredicted RBP9.08□□□□□ -0.96
USF3-201ENST00000316407 SCFD2Q8WU76 684 aa9.08□□□□□ -0.96
USF3-201ENST00000316407 TBKBP1A7MCY6 615 aa9.08□□□□□ -0.96
USF3-201ENST00000316407 TSPAN4O14817 238 aa9.08□□□□□ -0.96
USF3-201ENST00000316407 KRT36O76013 467 aa9.08□□□□□ -0.96
USF3-201ENST00000316407 PIK3R1P27986 724 aa9.08□□□□□ -0.96
USF3-201ENST00000316407 SERPINH1P50454 418 aaKnown RBP9.08□□□□□ -0.96
USF3-201ENST00000316407 ALDH5A1P51649 535 aaPredicted RBP9.08□□□□□ -0.96
USF3-201ENST00000316407 TBATAQ96M53 351 aa9.08□□□□□ -0.96
USF3-201ENST00000316407 MAP3K6O95382 1288 aa9.08□□□□□ -0.96
USF3-201ENST00000316407 CHMP1BQ7LBR1 199 aa9.08□□□□□ -0.96
USF3-201ENST00000316407 NLRP10Q86W26 655 aa9.08□□□□□ -0.96
USF3-201ENST00000316407 CDKL3Q8IVW4 592 aaPredicted RBP9.08□□□□□ -0.96
USF3-201ENST00000316407 WDR11Q9BZH6 1224 aa9.08□□□□□ -0.96
USF3-201ENST00000316407 TAGLN3Q9UI15 199 aa9.08□□□□□ -0.96
USF3-201ENST00000316407 DENND3A2RUS2 1198 aa9.08□□□□□ -0.96
USF3-201ENST00000316407 ADCY6O43306 1168 aa9.08□□□□□ -0.96
USF3-201ENST00000316407 CLASP2O75122 1294 aaKnown RBP9.08□□□□□ -0.96
USF3-201ENST00000316407 TRADDQ15628 312 aa9.08□□□□□ -0.96
USF3-201ENST00000316407 GPATCH4Q5T3I0 446 aaKnown RBP9.08□□□□□ -0.96
USF3-201ENST00000316407 CYP4A22Q5TCH4 519 aa9.08□□□□□ -0.96
USF3-201ENST00000316407 UTP15Q8TED0 518 aaKnown RBP9.08□□□□□ -0.96
USF3-201ENST00000316407 EPS8L2Q9H6S3 715 aa9.08□□□□□ -0.96
USF3-201ENST00000316407 ABCB10Q9NRK6 738 aa9.08□□□□□ -0.96
USF3-201ENST00000316407 SNX8Q9Y5X2 465 aa9.08□□□□□ -0.96
USF3-201ENST00000316407 CSADQ9Y600 493 aa9.08□□□□□ -0.96
USF3-201ENST00000316407 LAMC3Q9Y6N6 1575 aa9.08□□□□□ -0.96
USF3-201ENST00000316407 FAM196BA6NMK8 535 aa9.08□□□□□ -0.96
USF3-201ENST00000316407 AREL1O15033 823 aa9.08□□□□□ -0.96
USF3-201ENST00000316407 KRT6AP02538 564 aa9.08□□□□□ -0.96
USF3-201ENST00000316407 CYP19A1P11511 503 aaPredicted RBP9.08□□□□□ -0.96
USF3-201ENST00000316407 ADD2P35612 726 aa9.08□□□□□ -0.96
USF3-201ENST00000316407 EZH2Q15910 746 aaKnown RBP9.08□□□□□ -0.96
USF3-201ENST00000316407 ADRM1Q16186 407 aa9.08□□□□□ -0.96
USF3-201ENST00000316407 PSMA8Q8TAA3 256 aa9.08□□□□□ -0.96
USF3-201ENST00000316407 IP6K1Q92551 441 aa9.08□□□□□ -0.96
USF3-201ENST00000316407 TFECO14948 347 aaPredicted RBP9.08□□□□□ -0.96
USF3-201ENST00000316407 CAPZA2P47755 286 aa9.08□□□□□ -0.96
USF3-201ENST00000316407 NR1I3Q14994 352 aa9.08□□□□□ -0.96
USF3-201ENST00000316407 MIGA2Q7L4E1 593 aa9.08□□□□□ -0.96
USF3-201ENST00000316407 WBP11Q9Y2W2 641 aaKnown RBP9.08□□□□□ -0.96
USF3-201ENST00000316407 SMIM31A0A1B0GVY4 71 aa9.07□□□□□ -0.96
USF3-201ENST00000316407 CCDC182A6NF36 153 aa9.07□□□□□ -0.96
USF3-201ENST00000316407 CDH3P22223 829 aa9.07□□□□□ -0.96
USF3-201ENST00000316407 KLHL24Q6TFL4 600 aa9.07□□□□□ -0.96
USF3-201ENST00000316407 ATP8B4Q8TF62 1192 aa9.07□□□□□ -0.96
USF3-201ENST00000316407 VMP1Q96GC9 406 aa9.07□□□□□ -0.96
USF3-201ENST00000316407 BTG4Q9NY30 223 aa9.07□□□□□ -0.96
USF3-201ENST00000316407 ITIH2P19823 946 aa9.07□□□□□ -0.96
USF3-201ENST00000316407 TRAF3Q13114 568 aa9.07□□□□□ -0.96
USF3-201ENST00000316407 ALCAMQ13740 583 aa9.07□□□□□ -0.96
USF3-201ENST00000316407 KCNT1Q5JUK3 1230 aa9.07□□□□□ -0.96
USF3-201ENST00000316407 TEX13BQ9BXU2 312 aa9.07□□□□□ -0.96
USF3-201ENST00000316407 POLR3FQ9H1D9 316 aaPredicted RBP9.07□□□□□ -0.96
USF3-201ENST00000316407 A0A1W2PQC6 194 aa9.07□□□□□ -0.96
USF3-201ENST00000316407 HOXB7P09629 217 aa9.07□□□□□ -0.96
USF3-201ENST00000316407 ATG4AQ8WYN0 398 aa9.07□□□□□ -0.96
USF3-201ENST00000316407 KCTD14Q9BQ13 255 aaPredicted RBP9.07□□□□□ -0.96
USF3-201ENST00000316407 ZNF37AP17032 561 aaPredicted RBP9.07□□□□□ -0.96
USF3-201ENST00000316407 NAB2Q15742 525 aa9.07□□□□□ -0.96
USF3-201ENST00000316407 EFHC1Q5JVL4 640 aa9.07□□□□□ -0.96
USF3-201ENST00000316407 SDE2Q6IQ49 451 aa9.07□□□□□ -0.96
USF3-201ENST00000316407 SYDE1Q6ZW31 735 aaPredicted RBP9.07□□□□□ -0.96
USF3-201ENST00000316407 ZNF579Q8NAF0 562 aaKnown RBP9.07□□□□□ -0.96
USF3-201ENST00000316407 ASIC4Q96FT7 647 aa9.07□□□□□ -0.96
USF3-201ENST00000316407 FOXN3O00409 490 aaPredicted RBP9.07□□□□□ -0.96
USF3-201ENST00000316407 PGS1Q32NB8 556 aa9.07□□□□□ -0.96
USF3-201ENST00000316407 E7ENQ6 273 aa9.07□□□□□ -0.96
USF3-201ENST00000316407 USP33Q8TEY7 942 aa9.07□□□□□ -0.96
USF3-201ENST00000316407 SEPT1Q8WYJ6 367 aa9.07□□□□□ -0.96
USF3-201ENST00000316407 FIG4Q92562 907 aa9.07□□□□□ -0.96
USF3-201ENST00000316407 FAM192AQ9GZU8 254 aa9.07□□□□□ -0.96
USF3-201ENST00000316407 RRN3Q9NYV6 651 aa9.07□□□□□ -0.96
USF3-201ENST00000316407 NDUFA13Q9P0J0 144 aa9.07□□□□□ -0.96
USF3-201ENST00000316407 MYRFQ9Y2G1 1151 aa9.07□□□□□ -0.96
USF3-201ENST00000316407 SASH3O75995 380 aa9.07□□□□□ -0.96
USF3-201ENST00000316407 RPS8P62241 208 aaKnown RBP9.07□□□□□ -0.96
USF3-201ENST00000316407 TRMT5Q32P41 509 aaKnown RBP9.07□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms