RNA–Protein interactions for RNA: ENST00000303406.4

HOXC4-201, Transcript of homeobox C4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXC4, Length 1,524 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4-201ENST00000303406 ATL2Q8NHH9 583 aa20.52■□□□□ 0.87
HOXC4-201ENST00000303406 LENG1Q96BZ8 264 aaPredicted RBP20.52■□□□□ 0.87
HOXC4-201ENST00000303406 ZMAT2Q96NC0 199 aaKnown RBP20.52■□□□□ 0.87
HOXC4-201ENST00000303406 HMGXB4Q9UGU5 601 aa20.52■□□□□ 0.87
HOXC4-201ENST00000303406 PLAAQ9Y263 795 aa20.52■□□□□ 0.87
HOXC4-201ENST00000303406 SNX24Q9Y343 169 aa20.52■□□□□ 0.87
HOXC4-201ENST00000303406 NFS1Q9Y697 457 aa20.52■□□□□ 0.87
HOXC4-201ENST00000303406 CA12O43570 354 aa20.51■□□□□ 0.87
HOXC4-201ENST00000303406 RPLP2P05387 115 aaKnown RBP20.51■□□□□ 0.87
HOXC4-201ENST00000303406 CYP3A5P20815 502 aa20.51■□□□□ 0.87
HOXC4-201ENST00000303406 GYS2P54840 703 aa20.51■□□□□ 0.87
HOXC4-201ENST00000303406 NFX1Q12986 1120 aaKnown RBP20.51■□□□□ 0.87
HOXC4-201ENST00000303406 PDCLQ13371 301 aa20.51■□□□□ 0.87
HOXC4-201ENST00000303406 DRICH1Q6PGQ1 229 aaPredicted RBP20.51■□□□□ 0.87
HOXC4-201ENST00000303406 CCDC50Q8IVM0 306 aa20.51■□□□□ 0.87
HOXC4-201ENST00000303406 ART4Q93070 314 aa20.51■□□□□ 0.87
HOXC4-201ENST00000303406 HHIPL1Q96JK4 782 aa20.51■□□□□ 0.87
HOXC4-201ENST00000303406 HEXIM2Q96MH2 286 aaKnown RBP20.51■□□□□ 0.87
HOXC4-201ENST00000303406 SLITRK1Q96PX8 696 aa20.51■□□□□ 0.87
HOXC4-201ENST00000303406 CPXM1Q96SM3 734 aa20.51■□□□□ 0.87
HOXC4-201ENST00000303406 TRIM31Q9BZY9 425 aa20.51■□□□□ 0.87
HOXC4-201ENST00000303406 TRIM6Q9C030 488 aaPredicted RBP20.51■□□□□ 0.87
HOXC4-201ENST00000303406 UPF3AQ9H1J1 476 aaKnown RBP20.51■□□□□ 0.87
HOXC4-201ENST00000303406 GINS2Q9Y248 185 aa20.51■□□□□ 0.87
HOXC4-201ENST00000303406 EFR3BQ9Y2G0 817 aa20.51■□□□□ 0.87
HOXC4-201ENST00000303406 A6NNZ2 444 aa20.5■□□□□ 0.87
HOXC4-201ENST00000303406 M0QYV0 167 aa20.5■□□□□ 0.87
HOXC4-201ENST00000303406 RECQL4O94761 1208 aa20.5■□□□□ 0.87
HOXC4-201ENST00000303406 GAS8O95995 478 aa20.5■□□□□ 0.87
HOXC4-201ENST00000303406 FLT3P36888 993 aa20.5■□□□□ 0.87
HOXC4-201ENST00000303406 EIF3BP55884 814 aaKnown RBP20.5■□□□□ 0.87
HOXC4-201ENST00000303406 BEX3Q00994 111 aa20.5■□□□□ 0.87
HOXC4-201ENST00000303406 DHX9Q08211 1270 aaKnown RBP20.5■□□□□ 0.87
HOXC4-201ENST00000303406 TUBB8Q3ZCM7 444 aa20.5■□□□□ 0.87
HOXC4-201ENST00000303406 TTMPQ5BVD1 217 aa20.5■□□□□ 0.87
HOXC4-201ENST00000303406 UBXN11Q5T124 520 aa20.5■□□□□ 0.87
HOXC4-201ENST00000303406 CYP4A22Q5TCH4 519 aa20.5■□□□□ 0.87
HOXC4-201ENST00000303406 EMC10Q5UCC4 262 aa20.5■□□□□ 0.87
HOXC4-201ENST00000303406 C7orf31Q8N865 590 aa20.5■□□□□ 0.87
HOXC4-201ENST00000303406 IPO4Q8TEX9 1081 aaKnown RBP20.5■□□□□ 0.87
HOXC4-201ENST00000303406 C1orf54Q8WWF1 131 aa20.5■□□□□ 0.87
HOXC4-201ENST00000303406 HERPUD2Q9BSE4 406 aa20.5■□□□□ 0.87
HOXC4-201ENST00000303406 MTG1Q9BT17 334 aaPredicted RBP20.5■□□□□ 0.87
HOXC4-201ENST00000303406 PIN4Q9Y237 131 aaKnown RBP20.5■□□□□ 0.87
HOXC4-201ENST00000303406 HMGB1P1B2RPK0 211 aaPredicted RBP20.49■□□□□ 0.87
HOXC4-201ENST00000303406 F8VP50 259 aa20.49■□□□□ 0.87
HOXC4-201ENST00000303406 KRT7P08729 469 aa20.49■□□□□ 0.87
HOXC4-201ENST00000303406 CYBAP13498 195 aa20.49■□□□□ 0.87
HOXC4-201ENST00000303406 PSMA2P25787 234 aa20.49■□□□□ 0.87
HOXC4-201ENST00000303406 PNPLA4P41247 253 aa20.49■□□□□ 0.87
HOXC4-201ENST00000303406 SSR1P43307 286 aaKnown RBP20.49■□□□□ 0.87
HOXC4-201ENST00000303406 FCGRTP55899 365 aa20.49■□□□□ 0.87
HOXC4-201ENST00000303406 CAV1Q03135 178 aa20.49■□□□□ 0.87
HOXC4-201ENST00000303406 LMNB2Q03252 620 aa20.49■□□□□ 0.87
HOXC4-201ENST00000303406 PPP1R7Q15435 360 aa20.49■□□□□ 0.87
HOXC4-201ENST00000303406 HADHQ16836 314 aaKnown RBP20.49■□□□□ 0.87
HOXC4-201ENST00000303406 MFSD14CQ5VZR4 134 aa20.49■□□□□ 0.87
HOXC4-201ENST00000303406 C9orf57Q5W0N0 161 aa20.49■□□□□ 0.87
HOXC4-201ENST00000303406 FBXO25Q8TCJ0 367 aa20.49■□□□□ 0.87
HOXC4-201ENST00000303406 ZNF560Q96MR9 790 aa20.49■□□□□ 0.87
HOXC4-201ENST00000303406 DNAI2Q9GZS0 605 aa20.49■□□□□ 0.87
HOXC4-201ENST00000303406 SYNCQ9H7C4 482 aa20.49■□□□□ 0.87
HOXC4-201ENST00000303406 CHST7Q9NS84 486 aa20.49■□□□□ 0.87
HOXC4-201ENST00000303406 PIRO00625 290 aa20.48■□□□□ 0.87
HOXC4-201ENST00000303406 TJP3O95049 919 aa20.48■□□□□ 0.87
HOXC4-201ENST00000303406 KRT1P04264 644 aa20.48■□□□□ 0.87
HOXC4-201ENST00000303406 ERBB2P04626 1255 aa20.48■□□□□ 0.87
HOXC4-201ENST00000303406 NUDT17P0C025 328 aa20.48■□□□□ 0.87
HOXC4-201ENST00000303406 ITIH2P19823 946 aa20.48■□□□□ 0.87
HOXC4-201ENST00000303406 RFC1P35251 1148 aaPredicted RBP20.48■□□□□ 0.87
HOXC4-201ENST00000303406 KCNJ1P48048 391 aa20.48■□□□□ 0.87
HOXC4-201ENST00000303406 PLTPP55058 493 aa20.48■□□□□ 0.87
HOXC4-201ENST00000303406 IRX5P78411 483 aaPredicted RBP20.48■□□□□ 0.87
HOXC4-201ENST00000303406 KRT17Q04695 432 aa20.48■□□□□ 0.87
HOXC4-201ENST00000303406 SLMAPQ14BN4 828 aa20.48■□□□□ 0.87
HOXC4-201ENST00000303406 ARHGAP17Q68EM7 881 aa20.48■□□□□ 0.87
HOXC4-201ENST00000303406 SPOCD1Q6ZMY3 1216 aa20.48■□□□□ 0.87
HOXC4-201ENST00000303406 TMEM130Q8N3G9 435 aa20.48■□□□□ 0.87
HOXC4-201ENST00000303406 BBOF1Q8ND07 529 aa20.48■□□□□ 0.87
HOXC4-201ENST00000303406 TMEM40Q8WWA1 233 aa20.48■□□□□ 0.87
HOXC4-201ENST00000303406 ARL8AQ96BM9 186 aa20.48■□□□□ 0.87
HOXC4-201ENST00000303406 FRMD8P1Q9BZ68 369 aaPredicted RBP20.48■□□□□ 0.87
HOXC4-201ENST00000303406 TSPYL1Q9H0U9 437 aa20.48■□□□□ 0.87
HOXC4-201ENST00000303406 NXF3Q9H4D5 531 aaKnown RBP20.48■□□□□ 0.87
HOXC4-201ENST00000303406 TMBIM4Q9HC24 238 aa20.48■□□□□ 0.87
HOXC4-201ENST00000303406 TUBGCP4Q9UGJ1 667 aa20.48■□□□□ 0.87
HOXC4-201ENST00000303406 GTF3C5Q9Y5Q8 519 aaPredicted RBP20.48■□□□□ 0.87
HOXC4-201ENST00000303406 GOLGA6L10A6NI86 522 aa20.48■□□□□ 0.87
HOXC4-201ENST00000303406 FAM163BP0C2L3 166 aa20.48■□□□□ 0.87
HOXC4-201ENST00000303406 SNX16P57768 344 aa20.48■□□□□ 0.87
HOXC4-201ENST00000303406 SKOR1P84550 965 aa20.48■□□□□ 0.87
HOXC4-201ENST00000303406 CALCOCO2Q13137 446 aa20.48■□□□□ 0.87
HOXC4-201ENST00000303406 PKDCCQ504Y2 493 aa20.48■□□□□ 0.87
HOXC4-201ENST00000303406 DAB2IPQ5VWQ8 1189 aa20.48■□□□□ 0.87
HOXC4-201ENST00000303406 TRPV1Q8NER1 839 aa20.48■□□□□ 0.87
HOXC4-201ENST00000303406 CCHCR1Q8TD31 782 aa20.48■□□□□ 0.87
HOXC4-201ENST00000303406 STK32AQ8WU08 396 aa20.48■□□□□ 0.87
HOXC4-201ENST00000303406 UBLCP1Q8WVY7 318 aaPredicted RBP20.48■□□□□ 0.87
HOXC4-201ENST00000303406 GDAP2Q9NXN4 497 aa20.48■□□□□ 0.87
HOXC4-201ENST00000303406 TSPAN16Q9UKR8 245 aa20.48■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms