RNA–Protein interactions for RNA: ENST00000299138.11

VPS35-201, Transcript of VPS35, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS35, Length 6,790 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-201ENST00000299138 OR8H2Q8N162 312 aa6.69□□□□□ -1.34
VPS35-201ENST00000299138 SLC35G2Q8TBE7 412 aa6.69□□□□□ -1.34
VPS35-201ENST00000299138 NSL1Q96IY1 281 aa6.69□□□□□ -1.34
VPS35-201ENST00000299138 KCTD10Q9H3F6 313 aa6.69□□□□□ -1.34
VPS35-201ENST00000299138 LYPLA2O95372 231 aa6.69□□□□□ -1.34
VPS35-201ENST00000299138 ATP6V1B1P15313 513 aa6.69□□□□□ -1.34
VPS35-201ENST00000299138 FOSL1P15407 271 aa6.69□□□□□ -1.34
VPS35-201ENST00000299138 YWHABP31946 246 aaKnown RBP6.69□□□□□ -1.34
VPS35-201ENST00000299138 CTCFP49711 727 aaPredicted RBP6.69□□□□□ -1.34
VPS35-201ENST00000299138 CLK1P49759 484 aaKnown RBP6.69□□□□□ -1.34
VPS35-201ENST00000299138 ARFIP2P53365 341 aa6.69□□□□□ -1.34
VPS35-201ENST00000299138 ATP12AP54707 1039 aa6.69□□□□□ -1.34
VPS35-201ENST00000299138 BTN3A2P78410 334 aa6.69□□□□□ -1.34
VPS35-201ENST00000299138 CCSAPQ6IQ19 270 aaPredicted RBP6.69□□□□□ -1.34
VPS35-201ENST00000299138 KLHL24Q6TFL4 600 aa6.69□□□□□ -1.34
VPS35-201ENST00000299138 C7orf43Q8WVR3 580 aa6.69□□□□□ -1.34
VPS35-201ENST00000299138 KCNK16Q96T55 309 aa6.69□□□□□ -1.34
VPS35-201ENST00000299138 FAM8A1Q9UBU6 413 aa6.69□□□□□ -1.34
VPS35-201ENST00000299138 AURKCQ9UQB9 309 aa6.69□□□□□ -1.34
VPS35-201ENST00000299138 CLUHO75153 1309 aa6.69□□□□□ -1.34
VPS35-201ENST00000299138 SCN11AQ9UI33 1791 aa6.69□□□□□ -1.34
VPS35-201ENST00000299138 CCDC162PA2VCL2 907 aa6.69□□□□□ -1.34
VPS35-201ENST00000299138 BTBD19C9JJ37 291 aa6.69□□□□□ -1.34
VPS35-201ENST00000299138 C6orf229H3BNL8 230 aa6.69□□□□□ -1.34
VPS35-201ENST00000299138 UBOX5O94941 541 aa6.69□□□□□ -1.34
VPS35-201ENST00000299138 RTN3O95197 1032 aaPredicted RBP6.69□□□□□ -1.34
VPS35-201ENST00000299138 LDHAP00338 332 aaKnown RBP6.69□□□□□ -1.34
VPS35-201ENST00000299138 WEE2P0C1S8 567 aa6.69□□□□□ -1.34
VPS35-201ENST00000299138 TRIM49P0CI25 452 aa6.69□□□□□ -1.34
VPS35-201ENST00000299138 TRIM49CP0CI26 452 aa6.69□□□□□ -1.34
VPS35-201ENST00000299138 PYGMP11217 842 aa6.69□□□□□ -1.34
VPS35-201ENST00000299138 CD19P15391 556 aa6.69□□□□□ -1.34
VPS35-201ENST00000299138 ARPP19P56211 112 aa6.69□□□□□ -1.34
VPS35-201ENST00000299138 USF2Q15853 346 aaPredicted RBP6.69□□□□□ -1.34
VPS35-201ENST00000299138 KYNUQ16719 465 aa6.69□□□□□ -1.34
VPS35-201ENST00000299138 IYDQ6PHW0 289 aa6.69□□□□□ -1.34
VPS35-201ENST00000299138 FAM160B2Q86V87 743 aa6.69□□□□□ -1.34
VPS35-201ENST00000299138 STON2Q8WXE9 905 aa6.69□□□□□ -1.34
VPS35-201ENST00000299138 EPAS1Q99814 870 aa6.69□□□□□ -1.34
VPS35-201ENST00000299138 SLC5A4Q9NY91 659 aa6.69□□□□□ -1.34
VPS35-201ENST00000299138 MYH15Q9Y2K3 1946 aa6.69□□□□□ -1.34
VPS35-201ENST00000299138 ANKRD33BA6NCL7 494 aa6.68□□□□□ -1.34
VPS35-201ENST00000299138 CLASP2O75122 1294 aaKnown RBP6.68□□□□□ -1.34
VPS35-201ENST00000299138 TMCC1O94876 653 aa6.68□□□□□ -1.34
VPS35-201ENST00000299138 GCNT3O95395 438 aa6.68□□□□□ -1.34
VPS35-201ENST00000299138 ADSLP30566 484 aaPredicted RBP6.68□□□□□ -1.34
VPS35-201ENST00000299138 CWF19L1Q69YN2 538 aaKnown RBP6.68□□□□□ -1.34
VPS35-201ENST00000299138 PGBD2Q6P3X8 592 aa6.68□□□□□ -1.34
VPS35-201ENST00000299138 CROCCP3Q8IVE0 287 aa6.68□□□□□ -1.34
VPS35-201ENST00000299138 RIN3Q8TB24 985 aa6.68□□□□□ -1.34
VPS35-201ENST00000299138 TEKT3Q9BXF9 490 aa6.68□□□□□ -1.34
VPS35-201ENST00000299138 GCOM2Q9BZD3 368 aaPredicted RBP6.68□□□□□ -1.34
VPS35-201ENST00000299138 CLEC4MQ9H2X3 399 aaPredicted RBP6.68□□□□□ -1.34
VPS35-201ENST00000299138 KCNMB3Q9NPA1 279 aa6.68□□□□□ -1.34
VPS35-201ENST00000299138 GGT7Q9UJ14 662 aa6.68□□□□□ -1.34
VPS35-201ENST00000299138 CICQ96RK0 1608 aaPredicted RBP6.68□□□□□ -1.34
VPS35-201ENST00000299138 A0A1W2PRG6 482 aa6.68□□□□□ -1.34
VPS35-201ENST00000299138 A6NHS1 94 aa6.68□□□□□ -1.34
VPS35-201ENST00000299138 DNM1LO00429 736 aa6.68□□□□□ -1.34
VPS35-201ENST00000299138 BIRC5O15392 142 aa6.68□□□□□ -1.34
VPS35-201ENST00000299138 SMNDC1O75940 238 aaKnown RBP eCLIP6.68□□□□□ -1.34
VPS35-201ENST00000299138 OATP04181 439 aa6.68□□□□□ -1.34
VPS35-201ENST00000299138 FAM153BP0C7A2 387 aa6.68□□□□□ -1.34
VPS35-201ENST00000299138 CDK8P49336 464 aa6.68□□□□□ -1.34
VPS35-201ENST00000299138 PICALMQ13492 652 aa6.68□□□□□ -1.34
VPS35-201ENST00000299138 LLGL1Q15334 1064 aa6.68□□□□□ -1.34
VPS35-201ENST00000299138 TRIP4Q15650 581 aaPredicted RBP6.68□□□□□ -1.34
VPS35-201ENST00000299138 FAM153CQ494X1 144 aa6.68□□□□□ -1.34
VPS35-201ENST00000299138 MDH1BQ5I0G3 518 aa6.68□□□□□ -1.34
VPS35-201ENST00000299138 PCNX4Q63HM2 1172 aa6.68□□□□□ -1.34
VPS35-201ENST00000299138 LRRC8EQ6NSJ5 796 aa6.68□□□□□ -1.34
VPS35-201ENST00000299138 ARHGAP22Q7Z5H3 698 aa6.68□□□□□ -1.34
VPS35-201ENST00000299138 CRLF3Q8IUI8 442 aa6.68□□□□□ -1.34
VPS35-201ENST00000299138 SRRM1Q8IYB3 904 aaKnown RBP6.68□□□□□ -1.34
VPS35-201ENST00000299138 GALNT4Q8N4A0 578 aa6.68□□□□□ -1.34
VPS35-201ENST00000299138 CNBD1Q8NA66 436 aa6.68□□□□□ -1.34
VPS35-201ENST00000299138 SLC30A5Q8TAD4 765 aa6.68□□□□□ -1.34
VPS35-201ENST00000299138 ZNF564Q8TBZ8 553 aaPredicted RBP6.68□□□□□ -1.34
VPS35-201ENST00000299138 ASAP3Q8TDY4 903 aa6.68□□□□□ -1.34
VPS35-201ENST00000299138 ITFG2Q969R8 447 aa6.68□□□□□ -1.34
VPS35-201ENST00000299138 PIGSQ96S52 555 aa6.68□□□□□ -1.34
VPS35-201ENST00000299138 CCT7Q99832 543 aa6.68□□□□□ -1.34
VPS35-201ENST00000299138 CCSER2Q9H7U1 834 aa6.68□□□□□ -1.34
VPS35-201ENST00000299138 FANCEQ9HB96 536 aa6.68□□□□□ -1.34
VPS35-201ENST00000299138 EMC3Q9P0I2 261 aa6.68□□□□□ -1.34
VPS35-201ENST00000299138 FAM153AQ9UHL3 310 aa6.68□□□□□ -1.34
VPS35-201ENST00000299138 COL5A2P05997 1499 aaPredicted RBP6.68□□□□□ -1.34
VPS35-201ENST00000299138 SIPA1L3O60292 1781 aaPredicted RBP6.68□□□□□ -1.34
VPS35-201ENST00000299138 LTN1O94822 1766 aa6.68□□□□□ -1.34
VPS35-201ENST00000299138 H7C0C1 242 aa6.68□□□□□ -1.34
VPS35-201ENST00000299138 ASNA1O43681 348 aa6.68□□□□□ -1.34
VPS35-201ENST00000299138 SKAP2O75563 359 aaPredicted RBP6.68□□□□□ -1.34
VPS35-201ENST00000299138 CYP1A2P05177 515 aa6.68□□□□□ -1.34
VPS35-201ENST00000299138 KRT19P08727 400 aa6.68□□□□□ -1.34
VPS35-201ENST00000299138 HOXB6P17509 224 aaKnown RBP6.68□□□□□ -1.34
VPS35-201ENST00000299138 SFNP31947 248 aa6.68□□□□□ -1.34
VPS35-201ENST00000299138 PTPN7P35236 360 aa6.68□□□□□ -1.34
VPS35-201ENST00000299138 ATP5OP48047 213 aa6.68□□□□□ -1.34
VPS35-201ENST00000299138 ABATP80404 500 aa6.68□□□□□ -1.34
VPS35-201ENST00000299138 EFR3AQ14156 821 aa6.68□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms