RNA–Protein interactions for RNA: ENST00000263187.3

MSH4-201, Transcript of mutS homolog 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSH4, Length 3,266 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4-201ENST00000263187 DOCK5Q9H7D0 1870 aa9.6□□□□□ -0.87
MSH4-201ENST00000263187 A0A1B0GUA9 196 aa9.6□□□□□ -0.87
MSH4-201ENST00000263187 GARTP22102 1010 aa9.6□□□□□ -0.87
MSH4-201ENST00000263187 RAD23BP54727 409 aa9.6□□□□□ -0.87
MSH4-201ENST00000263187 CAV1Q03135 178 aa9.6□□□□□ -0.87
MSH4-201ENST00000263187 PTP4A2Q12974 167 aa9.6□□□□□ -0.87
MSH4-201ENST00000263187 MMRN1Q13201 1228 aa9.6□□□□□ -0.87
MSH4-201ENST00000263187 TAF11Q15544 211 aa9.6□□□□□ -0.87
MSH4-201ENST00000263187 HIF1AQ16665 826 aa9.6□□□□□ -0.87
MSH4-201ENST00000263187 NBPF20Q3BBV1 942 aa9.6□□□□□ -0.87
MSH4-201ENST00000263187 PLEKHA7Q6IQ23 1121 aa9.6□□□□□ -0.87
MSH4-201ENST00000263187 C15orf39Q6ZRI6 1047 aa9.6□□□□□ -0.87
MSH4-201ENST00000263187 UNC45BQ8IWX7 931 aa9.6□□□□□ -0.87
MSH4-201ENST00000263187 PALM2Q8IXS6 379 aa9.6□□□□□ -0.87
MSH4-201ENST00000263187 NIM1KQ8IY84 436 aa9.6□□□□□ -0.87
MSH4-201ENST00000263187 ALLCQ8N6M5 410 aa9.6□□□□□ -0.87
MSH4-201ENST00000263187 TTLL6Q8N841 843 aa9.6□□□□□ -0.87
MSH4-201ENST00000263187 MCPH1Q8NEM0 835 aa9.6□□□□□ -0.87
MSH4-201ENST00000263187 TCP10LQ8TDR4 215 aa9.6□□□□□ -0.87
MSH4-201ENST00000263187 TRAPPC12Q8WVT3 735 aa9.6□□□□□ -0.87
MSH4-201ENST00000263187 PTPRN2Q92932 1015 aa9.6□□□□□ -0.87
MSH4-201ENST00000263187 SPDL1Q96EA4 605 aa9.6□□□□□ -0.87
MSH4-201ENST00000263187 FAM81BQ96LP2 452 aa9.6□□□□□ -0.87
MSH4-201ENST00000263187 NTPCRQ9BSD7 190 aaKnown RBP9.6□□□□□ -0.87
MSH4-201ENST00000263187 TBC1D10AQ9BXI6 508 aa9.6□□□□□ -0.87
MSH4-201ENST00000263187 CISHQ9NSE2 258 aa9.6□□□□□ -0.87
MSH4-201ENST00000263187 RNF19AQ9NV58 838 aa9.6□□□□□ -0.87
MSH4-201ENST00000263187 IP6K2Q9UHH9 426 aa9.6□□□□□ -0.87
MSH4-201ENST00000263187 CCDC195A0A1B0GUA6 201 aa9.6□□□□□ -0.87
MSH4-201ENST00000263187 TMEM191CA6NGB0 347 aa9.6□□□□□ -0.87
MSH4-201ENST00000263187 TMEM191BP0C7N4 346 aa9.6□□□□□ -0.87
MSH4-201ENST00000263187 KITP10721 976 aa9.6□□□□□ -0.87
MSH4-201ENST00000263187 DPEP1P16444 411 aa9.6□□□□□ -0.87
MSH4-201ENST00000263187 IRX4P78413 519 aa9.6□□□□□ -0.87
MSH4-201ENST00000263187 TMEM132BQ14DG7 1078 aa9.6□□□□□ -0.87
MSH4-201ENST00000263187 DENND1BQ6P3S1 775 aa9.6□□□□□ -0.87
MSH4-201ENST00000263187 SYDE1Q6ZW31 735 aaPredicted RBP9.6□□□□□ -0.87
MSH4-201ENST00000263187 BZW1Q7L1Q6 419 aaKnown RBP9.6□□□□□ -0.87
MSH4-201ENST00000263187 ASRGL1Q7L266 308 aa9.6□□□□□ -0.87
MSH4-201ENST00000263187 ENOSF1Q7L5Y1 443 aa9.6□□□□□ -0.87
MSH4-201ENST00000263187 NIPA1Q7RTP0 329 aa9.6□□□□□ -0.87
MSH4-201ENST00000263187 KIAA0319LQ8IZA0 1049 aa9.6□□□□□ -0.87
MSH4-201ENST00000263187 DTX3LQ8TDB6 740 aa9.6□□□□□ -0.87
MSH4-201ENST00000263187 RSAD2Q8WXG1 361 aa9.6□□□□□ -0.87
MSH4-201ENST00000263187 SLC7A3Q8WY07 619 aa9.6□□□□□ -0.87
MSH4-201ENST00000263187 ZNF75CPQ92670 426 aaPredicted RBP9.6□□□□□ -0.87
MSH4-201ENST00000263187 TRIM11Q96F44 468 aa9.6□□□□□ -0.87
MSH4-201ENST00000263187 NUDCD1Q96RS6 583 aa9.6□□□□□ -0.87
MSH4-201ENST00000263187 ARMCX1Q9P291 453 aa9.6□□□□□ -0.87
MSH4-201ENST00000263187 CLUHO75153 1309 aa9.6□□□□□ -0.87
MSH4-201ENST00000263187 MMP8P22894 467 aa9.6□□□□□ -0.87
MSH4-201ENST00000263187 TRPC3Q13507 836 aa9.6□□□□□ -0.87
MSH4-201ENST00000263187 CENPUQ71F23 418 aa9.6□□□□□ -0.87
MSH4-201ENST00000263187 RFX6Q8HWS3 928 aa9.6□□□□□ -0.87
MSH4-201ENST00000263187 IGDCC3Q8IVU1 814 aa9.6□□□□□ -0.87
MSH4-201ENST00000263187 CTAGE3PQ8IX95 158 aa9.6□□□□□ -0.87
MSH4-201ENST00000263187 RCOR2Q8IZ40 523 aa9.6□□□□□ -0.87
MSH4-201ENST00000263187 WDTC1Q8N5D0 677 aa9.6□□□□□ -0.87
MSH4-201ENST00000263187 NETO2Q8NC67 525 aa9.6□□□□□ -0.87
MSH4-201ENST00000263187 FAM13CQ8NE31 585 aa9.6□□□□□ -0.87
MSH4-201ENST00000263187 NSUN6Q8TEA1 469 aaKnown RBP9.6□□□□□ -0.87
MSH4-201ENST00000263187 WRNIP1Q96S55 665 aa9.6□□□□□ -0.87
MSH4-201ENST00000263187 ZNF395Q9H8N7 513 aaPredicted RBP9.6□□□□□ -0.87
MSH4-201ENST00000263187 EBF2Q9HAK2 575 aa9.6□□□□□ -0.87
MSH4-201ENST00000263187 ZNF302Q9NR11 478 aa9.6□□□□□ -0.87
MSH4-201ENST00000263187 MARCOQ9UEW3 520 aaPredicted RBP9.6□□□□□ -0.87
MSH4-201ENST00000263187 LGALS13Q9UHV8 139 aa9.6□□□□□ -0.87
MSH4-201ENST00000263187 SCINQ9Y6U3 715 aa9.6□□□□□ -0.87
MSH4-201ENST00000263187 T-ENOLP0DO92 83 aa9.59□□□□□ -0.87
MSH4-201ENST00000263187 VCPP55072 806 aaKnown RBP9.59□□□□□ -0.87
MSH4-201ENST00000263187 YWHAGP61981 247 aaKnown RBP eCLIP9.59□□□□□ -0.87
MSH4-201ENST00000263187 ZBTB16Q05516 673 aa9.59□□□□□ -0.87
MSH4-201ENST00000263187 RNASEH2BQ5TBB1 312 aaKnown RBP9.59□□□□□ -0.87
MSH4-201ENST00000263187 C1orf228Q6PIY5 440 aa9.59□□□□□ -0.87
MSH4-201ENST00000263187 NLRP9Q7RTR0 991 aa9.59□□□□□ -0.87
MSH4-201ENST00000263187 TTC7BQ86TV6 843 aa9.59□□□□□ -0.87
MSH4-201ENST00000263187 TMEM192Q8IY95 271 aa9.59□□□□□ -0.87
MSH4-201ENST00000263187 GBP7Q8N8V2 638 aaPredicted RBP9.59□□□□□ -0.87
MSH4-201ENST00000263187 PRPF31Q8WWY3 499 aaKnown RBP9.59□□□□□ -0.87
MSH4-201ENST00000263187 CFAP36Q96G28 342 aa9.59□□□□□ -0.87
MSH4-201ENST00000263187 PAFAH2Q99487 392 aa9.59□□□□□ -0.87
MSH4-201ENST00000263187 ZFP69BQ9UJL9 534 aa9.59□□□□□ -0.87
MSH4-201ENST00000263187 hCG_1818297A0A087WSY0 165 aa9.59□□□□□ -0.87
MSH4-201ENST00000263187 PMM2O15305 246 aa9.59□□□□□ -0.87
MSH4-201ENST00000263187 TMEM63AO94886 807 aa9.59□□□□□ -0.87
MSH4-201ENST00000263187 CCND1P24385 295 aa9.59□□□□□ -0.87
MSH4-201ENST00000263187 PSMC1P62191 440 aaKnown RBP9.59□□□□□ -0.87
MSH4-201ENST00000263187 TFDP3Q5H9I0 405 aa9.59□□□□□ -0.87
MSH4-201ENST00000263187 ABHD15Q6UXT9 468 aa9.59□□□□□ -0.87
MSH4-201ENST00000263187 APBB1IPQ7Z5R6 666 aaPredicted RBP9.59□□□□□ -0.87
MSH4-201ENST00000263187 KCTD6Q8NC69 237 aa9.59□□□□□ -0.87
MSH4-201ENST00000263187 BBOF1Q8ND07 529 aa9.59□□□□□ -0.87
MSH4-201ENST00000263187 UBA3Q8TBC4 463 aa9.59□□□□□ -0.87
MSH4-201ENST00000263187 RBM41Q96IZ5 413 aaKnown RBP9.59□□□□□ -0.87
MSH4-201ENST00000263187 NLRP4Q96MN2 994 aa9.59□□□□□ -0.87
MSH4-201ENST00000263187 FAM111AQ96PZ2 611 aa9.59□□□□□ -0.87
MSH4-201ENST00000263187 WDR83Q9BRX9 315 aaKnown RBP9.59□□□□□ -0.87
MSH4-201ENST00000263187 MECRQ9BV79 373 aa9.59□□□□□ -0.87
MSH4-201ENST00000263187 ASCC2Q9H1I8 757 aaPredicted RBP9.59□□□□□ -0.87
MSH4-201ENST00000263187 DEFB129Q9H1M3 183 aa9.59□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms