RNA–Protein interactions for RNA: YKR094C

RPL40B, Transcript of Ubiquitin-ribosomal 60S subunit protein L40B fusion protein, yeast

Gene RPL40B, Length 387 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
RPL40B	YKR094C	SPA2	P23201	1466 aa	Known RBP	0.8	□□□□□ -2.28
RPL40B	YKR094C	STF2	P16965	84 aa		0.8	□□□□□ -2.28
RPL40B	YKR094C	PHO85	P17157	305 aa		0.8	□□□□□ -2.28
RPL40B	YKR094C	CPR5	P35176	225 aa		0.8	□□□□□ -2.28
RPL40B	YKR094C	YRA2	P36036	203 aa	Known RBP RIP-Chip data	0.8	□□□□□ -2.28	not detected
RPL40B	YKR094C	CSH1	P38287	376 aa		0.8	□□□□□ -2.28
RPL40B	YKR094C	SLM6	P38343	150 aa		0.8	□□□□□ -2.28
RPL40B	YKR094C	FYV4	P38783	130 aa	Predicted RBP	0.8	□□□□□ -2.28
RPL40B	YKR094C	HYR1	P40581	163 aa	Known RBP	0.8	□□□□□ -2.28
RPL40B	YKR094C	THG1	P53215	237 aa	Known RBP	0.8	□□□□□ -2.28
RPL40B	YKR094C	YML079W	Q03629	201 aa		0.8	□□□□□ -2.28
RPL40B	YKR094C	DML1	Q03652	475 aa		0.8	□□□□□ -2.28
RPL40B	YKR094C	PKR1	Q03880	122 aa	Known RBP	0.8	□□□□□ -2.28
RPL40B	YKR094C	RNH202	Q05635	350 aa		0.8	□□□□□ -2.28
RPL40B	YKR094C	ATG41	Q12048	136 aa		0.8	□□□□□ -2.28
RPL40B	YKR094C	YDL157C	Q12082	118 aa		0.8	□□□□□ -2.28
RPL40B	YKR094C	YMR030W-A	Q3E760	96 aa		0.8	□□□□□ -2.28
RPL40B	YKR094C	RPB7	P34087	171 aa		0.79	□□□□□ -2.28
RPL40B	YKR094C	HTD2	P38790	280 aa	Known RBP	0.79	□□□□□ -2.28
RPL40B	YKR094C	YEL073C	P39974	107 aa		0.79	□□□□□ -2.28
RPL40B	YKR094C	HPA3	P39979	161 aa		0.79	□□□□□ -2.28
RPL40B	YKR094C	YNL200C	P40165	246 aa	Known RBP	0.79	□□□□□ -2.28
RPL40B	YKR094C	FLX1	P40464	311 aa		0.79	□□□□□ -2.28
RPL40B	YKR094C	NSE4	P43124	402 aa		0.79	□□□□□ -2.28
RPL40B	YKR094C	NQM1	P53228	333 aa	Predicted RBP	0.79	□□□□□ -2.28
RPL40B	YKR094C	CWC27	Q02770	301 aa		0.79	□□□□□ -2.28
RPL40B	YKR094C	MZM1	Q03429	123 aa	Predicted RBP	0.79	□□□□□ -2.28
RPL40B	YKR094C	RIM9	Q04734	239 aa		0.79	□□□□□ -2.28
RPL40B	YKR094C	UPS1	Q05776	175 aa		0.79	□□□□□ -2.28
RPL40B	YKR094C	FIT2	Q08906	153 aa		0.79	□□□□□ -2.28
RPL40B	YKR094C	DUR1,2	P32528	1835 aa	Known RBP	0.79	□□□□□ -2.28
RPL40B	YKR094C	SEN2	P16658	377 aa		0.78	□□□□□ -2.28
RPL40B	YKR094C	UPS2	P35200	230 aa		0.78	□□□□□ -2.28
RPL40B	YKR094C	CCS1	P40202	249 aa	Known RBP	0.78	□□□□□ -2.28
RPL40B	YKR094C	YGR269W	P40326	108 aa		0.78	□□□□□ -2.28
RPL40B	YKR094C	LSM1	P47017	172 aa	Known RBP	0.78	□□□□□ -2.28
RPL40B	YKR094C	YJR015W	P47090	510 aa		0.78	□□□□□ -2.28
RPL40B	YKR094C	CCC1	P47818	322 aa		0.78	□□□□□ -2.28
RPL40B	YKR094C	GEP7	P53171	287 aa		0.78	□□□□□ -2.28
RPL40B	YKR094C	ORM1	P53224	222 aa		0.78	□□□□□ -2.28
RPL40B	YKR094C	YNR064C	P53750	290 aa		0.78	□□□□□ -2.28
RPL40B	YKR094C	YHP1	Q04116	353 aa		0.78	□□□□□ -2.28
RPL40B	YKR094C	RRT7	Q07829	113 aa		0.78	□□□□□ -2.28
RPL40B	YKR094C	YOR381W-A	Q3E804	55 aa		0.78	□□□□□ -2.28
RPL40B	YKR094C	ACC1	Q00955	2233 aa	Known RBP	0.78	□□□□□ -2.28
RPL40B	YKR094C	TAF2	P23255	1407 aa		0.78	□□□□□ -2.28
RPL40B	YKR094C	YGL041W-A	P0C5N3	154 aa		0.77	□□□□□ -2.29
RPL40B	YKR094C	PRE1	P22141	198 aa	Known RBP	0.77	□□□□□ -2.29
RPL40B	YKR094C	MAK31	P23059	88 aa		0.77	□□□□□ -2.29
RPL40B	YKR094C	YBL010C	P32788	280 aa		0.77	□□□□□ -2.29
RPL40B	YKR094C	YEL067C	P39978	195 aa		0.77	□□□□□ -2.29
RPL40B	YKR094C	CIN5	P40917	295 aa		0.77	□□□□□ -2.29
RPL40B	YKR094C	FIP1	P45976	327 aa		0.77	□□□□□ -2.29
RPL40B	YKR094C	YAE1	P47118	141 aa	Predicted RBP	0.77	□□□□□ -2.29
RPL40B	YKR094C	MOG1	P47123	218 aa		0.77	□□□□□ -2.29
RPL40B	YKR094C	PAC10	P48363	199 aa		0.77	□□□□□ -2.29
RPL40B	YKR094C	ATP19	P81451	68 aa		0.77	□□□□□ -2.29
RPL40B	YKR094C	UBC7	Q02159	165 aa		0.77	□□□□□ -2.29
RPL40B	YKR094C	ATG10	Q07879	167 aa		0.77	□□□□□ -2.29
RPL40B	YKR094C	ADE6	P38972	1358 aa	Known RBP	0.77	□□□□□ -2.29
RPL40B	YKR094C	SPS2	P08459	502 aa		0.76	□□□□□ -2.29
RPL40B	YKR094C	RPS25B	P0C0T4	108 aa	Known RBP	0.76	□□□□□ -2.29
RPL40B	YKR094C	PHO13	P19881	312 aa		0.76	□□□□□ -2.29
RPL40B	YKR094C	UBC8	P28263	218 aa		0.76	□□□□□ -2.29
RPL40B	YKR094C	YPT31	P38555	223 aa	Known RBP	0.76	□□□□□ -2.29
RPL40B	YKR094C	YHL042W	P38729	150 aa		0.76	□□□□□ -2.29
RPL40B	YKR094C	IPI1	P38803	334 aa	Predicted RBP	0.76	□□□□□ -2.29
RPL40B	YKR094C	YER181C	P40097	107 aa		0.76	□□□□□ -2.29
RPL40B	YKR094C	HHO1	P53551	258 aa		0.76	□□□□□ -2.29
RPL40B	YKR094C	YDR366C	P87287	132 aa		0.76	□□□□□ -2.29
RPL40B	YKR094C	RPS25A	Q3E792	108 aa	Predicted RBP	0.76	□□□□□ -2.29
RPL40B	YKR094C	UBR1	P19812	1950 aa		0.76	□□□□□ -2.29
RPL40B	YKR094C	YCL042W	P25572	119 aa		0.75	□□□□□ -2.29
RPL40B	YKR094C	AHT1	P29589	182 aa		0.75	□□□□□ -2.29
RPL40B	YKR094C	GIM4	P40005	111 aa	Known RBP	0.75	□□□□□ -2.29
RPL40B	YKR094C	MPM1	P40364	252 aa		0.75	□□□□□ -2.29
RPL40B	YKR094C	GPI2	P46961	280 aa		0.75	□□□□□ -2.29
RPL40B	YKR094C	RBL2	P48606	106 aa	Known RBP	0.75	□□□□□ -2.29
RPL40B	YKR094C	YDR102C	Q03864	110 aa		0.75	□□□□□ -2.29
RPL40B	YKR094C	ELP6	Q04868	273 aa		0.75	□□□□□ -2.29
RPL40B	YKR094C	YPR114W	Q06107	315 aa		0.75	□□□□□ -2.29
RPL40B	YKR094C	KEI1	Q06346	221 aa		0.75	□□□□□ -2.29
RPL40B	YKR094C	PST2	Q12335	198 aa	Known RBP	0.75	□□□□□ -2.29
RPL40B	YKR094C	RIF1	P29539	1916 aa		0.75	□□□□□ -2.29
RPL40B	YKR094C	SRP21	P32342	167 aa		0.74	□□□□□ -2.29
RPL40B	YKR094C	SUI1	P32911	108 aa	Known RBP	0.74	□□□□□ -2.29
RPL40B	YKR094C	MRPL24	P36525	258 aa	Predicted RBP	0.74	□□□□□ -2.29
RPL40B	YKR094C	ECM31	P38122	312 aa		0.74	□□□□□ -2.29
RPL40B	YKR094C	YJL218W	P40892	196 aa	Known RBP	0.74	□□□□□ -2.29
RPL40B	YKR094C	YGR201C	P42936	225 aa		0.74	□□□□□ -2.29
RPL40B	YKR094C	YGR039W	P53225	103 aa		0.74	□□□□□ -2.29
RPL40B	YKR094C	YDC1	Q02896	317 aa		0.74	□□□□□ -2.29
RPL40B	YKR094C	EST3	Q03096	181 aa		0.74	□□□□□ -2.29
RPL40B	YKR094C	FMN1	Q03778	218 aa		0.74	□□□□□ -2.29
RPL40B	YKR094C	YMR252C	Q04814	134 aa		0.74	□□□□□ -2.29
RPL40B	YKR094C	NMA1	Q06178	401 aa	Known RBP	0.74	□□□□□ -2.29
RPL40B	YKR094C	INO4	P13902	151 aa		0.73	□□□□□ -2.29
RPL40B	YKR094C	HSP12	P22943	109 aa	Known RBP	0.73	□□□□□ -2.29
RPL40B	YKR094C	RPC19	P28000	142 aa	Known RBP	0.73	□□□□□ -2.29
RPL40B	YKR094C	SHB17	P36136	271 aa	Known RBP	0.73	□□□□□ -2.29

Retrieved 100 of 5,963 RNA–protein pairs in 67.3 ms