RNA–Protein interactions for RNA: YHR012W

VPS29, Transcript of Subunit of the membrane-associated retromer complex, yeastyeast

Gene VPS29, Length 849 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
VPS29YHR012W MSO1P53604 210 aaKnown RBP3.66□□□□□ -1.82
VPS29YHR012W TIM11P81449 96 aaPredicted RBP3.66□□□□□ -1.82
VPS29YHR012W UBC7Q02159 165 aa3.66□□□□□ -1.82
VPS29YHR012W YMR090WQ04304 227 aaKnown RBP3.66□□□□□ -1.82
VPS29YHR012W ANT1Q06497 328 aa3.66□□□□□ -1.82
VPS29YHR012W STP4Q07351 490 aa3.66□□□□□ -1.82
VPS29YHR012W YOR352WQ08816 343 aa3.66□□□□□ -1.82
VPS29YHR012W ATP14Q12349 124 aa3.66□□□□□ -1.82
VPS29YHR012W AGC1Q12482 902 aa3.66□□□□□ -1.82
VPS29YHR012W SEC22P22214 214 aa3.65□□□□□ -1.83
VPS29YHR012W PRE9P23638 258 aaKnown RBP3.65□□□□□ -1.83
VPS29YHR012W SIP1P32578 815 aa3.65□□□□□ -1.83
VPS29YHR012W YKL162CP36052 402 aa3.65□□□□□ -1.83
VPS29YHR012W MST28P39552 234 aa3.65□□□□□ -1.83
VPS29YHR012W BDH1P39714 382 aa3.65□□□□□ -1.83
VPS29YHR012W YJR111CP47148 283 aaKnown RBP3.65□□□□□ -1.83
VPS29YHR012W MIC26P50087 233 aa3.65□□□□□ -1.83
VPS29YHR012W MST27P53176 234 aa3.65□□□□□ -1.83
VPS29YHR012W PDR17P53844 350 aa3.65□□□□□ -1.83
VPS29YHR012W TIM44Q01852 431 aa3.65□□□□□ -1.83
VPS29YHR012W YML108WQ03759 105 aa3.65□□□□□ -1.83
VPS29YHR012W FRQ1Q06389 190 aa3.65□□□□□ -1.83
VPS29YHR012W RDS3Q06835 107 aaPredicted RBP3.65□□□□□ -1.83
VPS29YHR012W YPL264CQ08980 353 aa3.65□□□□□ -1.83
VPS29YHR012W YPR013CQ12145 317 aa3.65□□□□□ -1.83
VPS29YHR012W YPR063CQ12160 140 aa3.65□□□□□ -1.83
VPS29YHR012W TMA17Q12513 150 aa3.65□□□□□ -1.83
VPS29YHR012W TPI1P00942 248 aaKnown RBP3.64□□□□□ -1.83
VPS29YHR012W PIS1P06197 220 aaKnown RBP3.64□□□□□ -1.83
VPS29YHR012W TIP1P27654 210 aaPredicted RBP3.64□□□□□ -1.83
VPS29YHR012W EMP24P32803 203 aaKnown RBP3.64□□□□□ -1.83
VPS29YHR012W CMC1P36064 111 aa3.64□□□□□ -1.83
VPS29YHR012W GCV3P39726 170 aaPredicted RBP3.64□□□□□ -1.83
VPS29YHR012W YIR035CP40579 254 aa3.64□□□□□ -1.83
VPS29YHR012W LST7P53237 242 aa3.64□□□□□ -1.83
VPS29YHR012W YIP3P53633 176 aa3.64□□□□□ -1.83
VPS29YHR012W YIF1P53845 314 aaKnown RBP3.64□□□□□ -1.83
VPS29YHR012W GPI15P53961 229 aa3.64□□□□□ -1.83
VPS29YHR012W LOA1Q06508 300 aa3.64□□□□□ -1.83
VPS29YHR012W AIM45Q12480 344 aaKnown RBP3.64□□□□□ -1.83
VPS29YHR012W YNL146C-AQ3E7Z1 64 aa3.64□□□□□ -1.83
VPS29YHR012W YOR011W-AQ3E807 68 aa3.64□□□□□ -1.83
VPS29YHR012W ISN1Q99312 450 aa3.64□□□□□ -1.83
VPS29YHR012W FCY2P17064 533 aa3.63□□□□□ -1.83
VPS29YHR012W YCR022CP25620 114 aa3.63□□□□□ -1.83
VPS29YHR012W PHD1P36093 366 aa3.63□□□□□ -1.83
VPS29YHR012W ASP1P38986 381 aaPredicted RBP3.63□□□□□ -1.83
VPS29YHR012W SNU13P39990 126 aaKnown RBP3.63□□□□□ -1.83
VPS29YHR012W MCM22P47167 239 aa3.63□□□□□ -1.83
VPS29YHR012W SRB7P47822 140 aa3.63□□□□□ -1.83
VPS29YHR012W YGR018CP53211 109 aa3.63□□□□□ -1.83
VPS29YHR012W HAL1Q01766 294 aa3.63□□□□□ -1.83
VPS29YHR012W SGF11Q03067 99 aa3.63□□□□□ -1.83
VPS29YHR012W BER1Q06688 274 aaKnown RBP3.63□□□□□ -1.83
VPS29YHR012W POS5Q06892 414 aa3.63□□□□□ -1.83
VPS29YHR012W RPS25BP0C0T4 108 aaKnown RBP3.62□□□□□ -1.83
VPS29YHR012W ACP1P32463 125 aa3.62□□□□□ -1.83
VPS29YHR012W SLM6P38343 150 aa3.62□□□□□ -1.83
VPS29YHR012W YJL027CP47063 138 aaPredicted RBP3.62□□□□□ -1.83
VPS29YHR012W PHO23P50947 330 aa3.62□□□□□ -1.83
VPS29YHR012W YGL117WP53133 265 aa3.62□□□□□ -1.83
VPS29YHR012W PNC1P53184 216 aaKnown RBP3.62□□□□□ -1.83
VPS29YHR012W HCH1P53834 153 aa3.62□□□□□ -1.83
VPS29YHR012W ODC1Q03028 310 aa3.62□□□□□ -1.83
VPS29YHR012W RRT7Q07829 113 aa3.62□□□□□ -1.83
VPS29YHR012W VAM10Q08474 114 aa3.62□□□□□ -1.83
VPS29YHR012W YLR146W-AQ2V2P1 62 aa3.62□□□□□ -1.83
VPS29YHR012W RPS25AQ3E792 108 aaPredicted RBP3.62□□□□□ -1.83
VPS29YHR012W YHR213W-AQ8TGT4 77 aa3.62□□□□□ -1.83
VPS29YHR012W CDC7P06243 507 aa3.61□□□□□ -1.83
VPS29YHR012W DFR1P07807 211 aaKnown RBP RIP-Chip data3.61□□□□□ -1.83not detected
VPS29YHR012W YHR213WP0CI67 198 aa3.61□□□□□ -1.83
VPS29YHR012W SAS2P40963 338 aa3.61□□□□□ -1.83
VPS29YHR012W YJR015WP47090 510 aa3.61□□□□□ -1.83
VPS29YHR012W MIC27P50945 234 aa3.61□□□□□ -1.83
VPS29YHR012W PKP2P53170 491 aa3.61□□□□□ -1.83
VPS29YHR012W FCF2Q12035 217 aaPredicted RBP3.61□□□□□ -1.83
VPS29YHR012W UBI4P0CG63 381 aaKnown RBP3.6□□□□□ -1.83
VPS29YHR012W ECM25P32525 599 aa3.6□□□□□ -1.83
VPS29YHR012W SRB6P32570 121 aa3.6□□□□□ -1.83
VPS29YHR012W SFT2P38166 215 aa3.6□□□□□ -1.83
VPS29YHR012W PET100P38958 111 aa3.6□□□□□ -1.83
VPS29YHR012W SNN1P48232 102 aa3.6□□□□□ -1.83
VPS29YHR012W HST4P53688 370 aa3.6□□□□□ -1.83
VPS29YHR012W BOR1P53838 576 aa3.6□□□□□ -1.83
VPS29YHR012W YMR244WQ04018 355 aa3.6□□□□□ -1.83
VPS29YHR012W ERP1Q05359 219 aaKnown RBP3.6□□□□□ -1.83
VPS29YHR012W YLR179CQ06252 201 aaKnown RBP3.6□□□□□ -1.83
VPS29YHR012W POC4Q12245 148 aaPredicted RBP3.6□□□□□ -1.83
VPS29YHR012W PRM7Q12459 698 aa3.6□□□□□ -1.83
VPS29YHR012W YPR145C-AQ2V2P0 78 aa3.6□□□□□ -1.83
VPS29YHR012W YCR075W-AQ3E830 75 aa3.6□□□□□ -1.83
VPS29YHR012W DDI2P0CH63 225 aa3.59□□□□□ -1.83
VPS29YHR012W DDI3P0CH64 225 aa3.59□□□□□ -1.83
VPS29YHR012W RPL2AP0CX45 254 aaKnown RBP3.59□□□□□ -1.83
VPS29YHR012W RPL2BP0CX46 254 aaKnown RBP3.59□□□□□ -1.83
VPS29YHR012W RPS11AP0CX47 156 aaKnown RBP3.59□□□□□ -1.83
VPS29YHR012W RPS11BP0CX48 156 aaKnown RBP3.59□□□□□ -1.83
VPS29YHR012W CNB1P25296 175 aa3.59□□□□□ -1.83
VPS29YHR012W LDS1P31379 325 aa3.59□□□□□ -1.83
Retrieved 100 of 5,963 RNA–protein pairs in 25.3 ms