RNA–Protein interactions for RNA: ENST00000637551.2

CLN3-259, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,083 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-259ENST00000637551 TMC5Q6UXY8 1006 aa19.59■□□□□ 0.73
CLN3-259ENST00000637551 GLYCTKQ8IVS8 523 aa19.59■□□□□ 0.73
CLN3-259ENST00000637551 PLCD3Q8N3E9 789 aa19.59■□□□□ 0.73
CLN3-259ENST00000637551 TTC39CQ8N584 583 aa19.59■□□□□ 0.73
CLN3-259ENST00000637551 SMG7Q92540 1137 aaKnown RBP19.59■□□□□ 0.73
CLN3-259ENST00000637551 RTP3Q9BQQ7 232 aa19.59■□□□□ 0.73
CLN3-259ENST00000637551 COQ4Q9Y3A0 265 aa19.59■□□□□ 0.73
CLN3-259ENST00000637551 TIMM13Q9Y5L4 95 aaPredicted RBP19.59■□□□□ 0.73
CLN3-259ENST00000637551 INSL5Q9Y5Q6 135 aa19.59■□□□□ 0.73
CLN3-259ENST00000637551 CLUHO75153 1309 aa19.58■□□□□ 0.73
CLN3-259ENST00000637551 PRRG1O14668 218 aa19.58■□□□□ 0.72
CLN3-259ENST00000637551 P4HA2O15460 535 aa19.58■□□□□ 0.72
CLN3-259ENST00000637551 CST3P01034 146 aaPredicted RBP19.58■□□□□ 0.72
CLN3-259ENST00000637551 MXI1P50539 228 aa19.58■□□□□ 0.72
CLN3-259ENST00000637551 DLG4P78352 724 aa19.58■□□□□ 0.72
CLN3-259ENST00000637551 WDR72Q3MJ13 1102 aa19.58■□□□□ 0.72
CLN3-259ENST00000637551 CFAP221Q4G0U5 840 aa19.58■□□□□ 0.72
CLN3-259ENST00000637551 ZNF667Q5HYK9 610 aa19.58■□□□□ 0.72
CLN3-259ENST00000637551 OTOP3Q7RTS5 596 aa19.58■□□□□ 0.72
CLN3-259ENST00000637551 CCDC150Q8NCX0 1101 aa19.58■□□□□ 0.72
CLN3-259ENST00000637551 OR10T2Q8NGX3 314 aa19.58■□□□□ 0.72
CLN3-259ENST00000637551 GPT2Q8TD30 523 aa19.58■□□□□ 0.72
CLN3-259ENST00000637551 DUSP9Q99956 384 aaKnown RBP19.58■□□□□ 0.72
CLN3-259ENST00000637551 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP19.58■□□□□ 0.72
CLN3-259ENST00000637551 CDH9Q9ULB4 789 aa19.58■□□□□ 0.72
CLN3-259ENST00000637551 C5orf42Q9H799 3197 aa19.57■□□□□ 0.72
CLN3-259ENST00000637551 PTPRDP23468 1912 aa19.57■□□□□ 0.72
CLN3-259ENST00000637551 MTMR11A4FU01 709 aa19.57■□□□□ 0.72
CLN3-259ENST00000637551 TRIM49BA6NDI0 452 aa19.57■□□□□ 0.72
CLN3-259ENST00000637551 BIN1O00499 593 aa19.57■□□□□ 0.72
CLN3-259ENST00000637551 RFPL2O75678 378 aa19.57■□□□□ 0.72
CLN3-259ENST00000637551 VNN1O95497 513 aa19.57■□□□□ 0.72
CLN3-259ENST00000637551 LRG1P02750 347 aa19.57■□□□□ 0.72
CLN3-259ENST00000637551 SSTR3P32745 418 aaPredicted RBP19.57■□□□□ 0.72
CLN3-259ENST00000637551 MYL6P60660 151 aa19.57■□□□□ 0.72
CLN3-259ENST00000637551 ADCY1Q08828 1119 aa19.57■□□□□ 0.72
CLN3-259ENST00000637551 INTS6LQ5JSJ4 861 aaKnown RBP19.57■□□□□ 0.72
CLN3-259ENST00000637551 ZDHHC14Q8IZN3 488 aa19.57■□□□□ 0.72
CLN3-259ENST00000637551 ELMOD1Q8N336 334 aa19.57■□□□□ 0.72
CLN3-259ENST00000637551 TMEM130Q8N3G9 435 aa19.57■□□□□ 0.72
CLN3-259ENST00000637551 FBXL13Q8NEE6 735 aa19.57■□□□□ 0.72
CLN3-259ENST00000637551 KBTBD7Q8WVZ9 684 aa19.57■□□□□ 0.72
CLN3-259ENST00000637551 SLC35C1Q96A29 364 aa19.57■□□□□ 0.72
CLN3-259ENST00000637551 DNAI2Q9GZS0 605 aa19.57■□□□□ 0.72
CLN3-259ENST00000637551 POMKQ9H5K3 350 aa19.57■□□□□ 0.72
CLN3-259ENST00000637551 CYP3A43Q9HB55 503 aa19.57■□□□□ 0.72
CLN3-259ENST00000637551 CYP4F11Q9HBI6 524 aa19.57■□□□□ 0.72
CLN3-259ENST00000637551 DDX43Q9NXZ2 648 aaKnown RBP19.57■□□□□ 0.72
CLN3-259ENST00000637551 CTNND2Q9UQB3 1225 aa19.57■□□□□ 0.72
CLN3-259ENST00000637551 ZNF318Q5VUA4 2279 aa19.56■□□□□ 0.72
CLN3-259ENST00000637551 FGF19O95750 216 aa19.56■□□□□ 0.72
CLN3-259ENST00000637551 TRIM21P19474 475 aaKnown RBP19.56■□□□□ 0.72
CLN3-259ENST00000637551 PIK3CAP42336 1068 aa19.56■□□□□ 0.72
CLN3-259ENST00000637551 EPHA5P54756 1037 aa19.56■□□□□ 0.72
CLN3-259ENST00000637551 NLRP12P59046 1061 aa19.56■□□□□ 0.72
CLN3-259ENST00000637551 PPP3CAQ08209 521 aa19.56■□□□□ 0.72
CLN3-259ENST00000637551 KLHL10Q6JEL2 608 aa19.56■□□□□ 0.72
CLN3-259ENST00000637551 FAM171BQ6P995 826 aa19.56■□□□□ 0.72
CLN3-259ENST00000637551 RNF19BQ6ZMZ0 732 aa19.56■□□□□ 0.72
CLN3-259ENST00000637551 C4orf50Q6ZRC1 276 aa19.56■□□□□ 0.72
CLN3-259ENST00000637551 C12orf76Q8N812 135 aaPredicted RBP19.56■□□□□ 0.72
CLN3-259ENST00000637551 ACSF2Q96CM8 615 aaPredicted RBP19.56■□□□□ 0.72
CLN3-259ENST00000637551 PKMYT1Q99640 499 aa19.56■□□□□ 0.72
CLN3-259ENST00000637551 PIDD1Q9HB75 910 aa19.56■□□□□ 0.72
CLN3-259ENST00000637551 HLA-DRAP01903 254 aa19.55■□□□□ 0.72
CLN3-259ENST00000637551 SPATA31D3P0C874 917 aa19.55■□□□□ 0.72
CLN3-259ENST00000637551 CCDC192P0DO97 292 aa19.55■□□□□ 0.72
CLN3-259ENST00000637551 MAGEA11P43364 429 aa19.55■□□□□ 0.72
CLN3-259ENST00000637551 CETN1Q12798 172 aa19.55■□□□□ 0.72
CLN3-259ENST00000637551 SPATA31D4Q6ZUB0 917 aa19.55■□□□□ 0.72
CLN3-259ENST00000637551 ITIH5Q86UX2 942 aa19.55■□□□□ 0.72
CLN3-259ENST00000637551 UNC93AQ86WB7 457 aa19.55■□□□□ 0.72
CLN3-259ENST00000637551 NXPE3Q969Y0 559 aa19.55■□□□□ 0.72
CLN3-259ENST00000637551 MMS19Q96T76 1030 aa19.55■□□□□ 0.72
CLN3-259ENST00000637551 BCO2Q9BYV7 579 aa19.55■□□□□ 0.72
CLN3-259ENST00000637551 ZMYM5Q9UJ78 669 aa19.55■□□□□ 0.72
CLN3-259ENST00000637551 YIPF1Q9Y548 306 aa19.55■□□□□ 0.72
CLN3-259ENST00000637551 PCDHB5Q9Y5E4 795 aa19.55■□□□□ 0.72
CLN3-259ENST00000637551 NOTCH4Q99466 2003 aa19.54■□□□□ 0.72
CLN3-259ENST00000637551 TRIM49P0CI25 452 aa19.54■□□□□ 0.72
CLN3-259ENST00000637551 TRIM49CP0CI26 452 aa19.54■□□□□ 0.72
CLN3-259ENST00000637551 ALDH1A3P47895 512 aa19.54■□□□□ 0.72
CLN3-259ENST00000637551 GCLMP48507 274 aa19.54■□□□□ 0.72
CLN3-259ENST00000637551 ARPP19P56211 112 aa19.54■□□□□ 0.72
CLN3-259ENST00000637551 NOP14P78316 857 aaKnown RBP19.54■□□□□ 0.72
CLN3-259ENST00000637551 INCA1Q0VD86 236 aa19.54■□□□□ 0.72
CLN3-259ENST00000637551 SLC39A12Q504Y0 691 aa19.54■□□□□ 0.72
CLN3-259ENST00000637551 CCDC183Q5T5S1 534 aa19.54■□□□□ 0.72
CLN3-259ENST00000637551 ISM2Q6H9L7 571 aa19.54■□□□□ 0.72
CLN3-259ENST00000637551 IQCEQ6IPM2 695 aa19.54■□□□□ 0.72
CLN3-259ENST00000637551 VSTM1Q6UX27 236 aa19.54■□□□□ 0.72
CLN3-259ENST00000637551 TRIM59Q8IWR1 403 aa19.54■□□□□ 0.72
CLN3-259ENST00000637551 TDRD5Q8NAT2 981 aaKnown RBP19.54■□□□□ 0.72
CLN3-259ENST00000637551 TNIP3Q96KP6 325 aa19.54■□□□□ 0.72
CLN3-259ENST00000637551 NIF3L1Q9GZT8 377 aa19.54■□□□□ 0.72
CLN3-259ENST00000637551 SNX25Q9H3E2 840 aa19.54■□□□□ 0.72
CLN3-259ENST00000637551 EPS15L1Q9UBC2 864 aa19.54■□□□□ 0.72
CLN3-259ENST00000637551 ZNF197O14709 1029 aa19.53■□□□□ 0.72
CLN3-259ENST00000637551 DCXO43602 365 aa19.53■□□□□ 0.72
CLN3-259ENST00000637551 SEC24AO95486 1093 aa19.53■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms