RNA–Protein interactions for RNA: ENST00000637050.1

CLN3-254, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-254ENST00000637050 GNL1P36915 607 aaPredicted RBP19.58■□□□□ 0.72
CLN3-254ENST00000637050 NAP1L1P55209 391 aaKnown RBP19.58■□□□□ 0.72
CLN3-254ENST00000637050 MON1BQ7L1V2 547 aa19.58■□□□□ 0.72
CLN3-254ENST00000637050 RHOT2Q8IXI1 618 aa19.58■□□□□ 0.72
CLN3-254ENST00000637050 CRYBG2Q8N1P7 616 aa19.58■□□□□ 0.72
CLN3-254ENST00000637050 TMEM35BQ8NCS4 154 aa19.58■□□□□ 0.72
CLN3-254ENST00000637050 SLC35G2Q8TBE7 412 aa19.58■□□□□ 0.72
CLN3-254ENST00000637050 RABGGTAQ92696 567 aa19.58■□□□□ 0.72
CLN3-254ENST00000637050 TRIM43Q96BQ3 446 aaPredicted RBP19.58■□□□□ 0.72
CLN3-254ENST00000637050 NAPGQ99747 312 aaPredicted RBP19.58■□□□□ 0.72
CLN3-254ENST00000637050 SNX25Q9H3E2 840 aa19.58■□□□□ 0.72
CLN3-254ENST00000637050 RNF216Q9NWF9 866 aaPredicted RBP19.58■□□□□ 0.72
CLN3-254ENST00000637050 LRFN2Q9ULH4 789 aa19.58■□□□□ 0.72
CLN3-254ENST00000637050 WDR3Q9UNX4 943 aaKnown RBP eCLIP19.58■□□□□ 0.72
CLN3-254ENST00000637050 STXBP5LQ9Y2K9 1186 aa19.58■□□□□ 0.72
CLN3-254ENST00000637050 A8MXQ7 604 aa19.57■□□□□ 0.72
CLN3-254ENST00000637050 GABRDO14764 452 aa19.57■□□□□ 0.72
CLN3-254ENST00000637050 B4GALT3O60512 393 aa19.57■□□□□ 0.72
CLN3-254ENST00000637050 DDHD2O94830 711 aa19.57■□□□□ 0.72
CLN3-254ENST00000637050 NOP2P46087 812 aaKnown RBP19.57■□□□□ 0.72
CLN3-254ENST00000637050 HADHBP55084 474 aaKnown RBP19.57■□□□□ 0.72
CLN3-254ENST00000637050 DCLRE1AQ6PJP8 1040 aa19.57■□□□□ 0.72
CLN3-254ENST00000637050 ACOT1Q86TX2 421 aa19.57■□□□□ 0.72
CLN3-254ENST00000637050 ZNF280BQ86YH2 543 aa19.57■□□□□ 0.72
CLN3-254ENST00000637050 WDTC1Q8N5D0 677 aa19.57■□□□□ 0.72
CLN3-254ENST00000637050 TRIM11Q96F44 468 aa19.57■□□□□ 0.72
CLN3-254ENST00000637050 VCPIP1Q96JH7 1222 aa19.57■□□□□ 0.72
CLN3-254ENST00000637050 CASD1Q96PB1 797 aa19.57■□□□□ 0.72
CLN3-254ENST00000637050 TTC3P53804 2025 aa19.57■□□□□ 0.72
CLN3-254ENST00000637050 GRID2IPA4D2P6 1211 aa19.56■□□□□ 0.72
CLN3-254ENST00000637050 HOXA2O43364 376 aa19.56■□□□□ 0.72
CLN3-254ENST00000637050 B3GAT3O94766 335 aa19.56■□□□□ 0.72
CLN3-254ENST00000637050 MYBL1P10243 752 aa19.56■□□□□ 0.72
CLN3-254ENST00000637050 LMO2P25791 158 aa19.56■□□□□ 0.72
CLN3-254ENST00000637050 ITGB8P26012 769 aa19.56■□□□□ 0.72
CLN3-254ENST00000637050 PTP4A2Q12974 167 aa19.56■□□□□ 0.72
CLN3-254ENST00000637050 IKBKEQ14164 716 aa19.56■□□□□ 0.72
CLN3-254ENST00000637050 STILQ15468 1287 aa19.56■□□□□ 0.72
CLN3-254ENST00000637050 TIGD5Q53EQ6 642 aa19.56■□□□□ 0.72
CLN3-254ENST00000637050 WSCD1Q658N2 575 aa19.56■□□□□ 0.72
CLN3-254ENST00000637050 DENND1BQ6P3S1 775 aa19.56■□□□□ 0.72
CLN3-254ENST00000637050 LCLAT1Q6UWP7 414 aa19.56■□□□□ 0.72
CLN3-254ENST00000637050 OSTM1Q86WC4 334 aa19.56■□□□□ 0.72
CLN3-254ENST00000637050 NPAS4Q8IUM7 802 aa19.56■□□□□ 0.72
CLN3-254ENST00000637050 COLGALT2Q8IYK4 626 aa19.56■□□□□ 0.72
CLN3-254ENST00000637050 ABI1Q8IZP0 508 aa19.56■□□□□ 0.72
CLN3-254ENST00000637050 TMEM86AQ8N2M4 240 aa19.56■□□□□ 0.72
CLN3-254ENST00000637050 TPCN2Q8NHX9 752 aa19.56■□□□□ 0.72
CLN3-254ENST00000637050 ZNF653Q96CK0 615 aa19.56■□□□□ 0.72
CLN3-254ENST00000637050 CALR3Q96L12 384 aaKnown RBP19.56■□□□□ 0.72
CLN3-254ENST00000637050 OSGEPQ9NPF4 335 aa19.56■□□□□ 0.72
CLN3-254ENST00000637050 CEP83Q9Y592 693 aa19.56■□□□□ 0.72
CLN3-254ENST00000637050 KIAA0100Q14667 2235 aaKnown RBP19.56■□□□□ 0.72
CLN3-254ENST00000637050 PALMO75781 387 aa19.56■□□□□ 0.72
CLN3-254ENST00000637050 MTA2O94776 668 aa19.56■□□□□ 0.72
CLN3-254ENST00000637050 MICAL2O94851 1124 aa19.56■□□□□ 0.72
CLN3-254ENST00000637050 EN2P19622 333 aaPredicted RBP19.56■□□□□ 0.72
CLN3-254ENST00000637050 MMP8P22894 467 aa19.56■□□□□ 0.72
CLN3-254ENST00000637050 C1QBPQ07021 282 aaKnown RBP19.56■□□□□ 0.72
CLN3-254ENST00000637050 DSTYKQ6XUX3 929 aa19.56■□□□□ 0.72
CLN3-254ENST00000637050 C12orf29Q8N999 325 aa19.56■□□□□ 0.72
CLN3-254ENST00000637050 LRRC57Q8N9N7 239 aa19.56■□□□□ 0.72
CLN3-254ENST00000637050 C1orf131Q8NDD1 294 aaKnown RBP19.56■□□□□ 0.72
CLN3-254ENST00000637050 RSPH1Q8WYR4 309 aa19.56■□□□□ 0.72
CLN3-254ENST00000637050 DNAI2Q9GZS0 605 aa19.56■□□□□ 0.72
CLN3-254ENST00000637050 DPEP3Q9H4B8 488 aa19.56■□□□□ 0.72
CLN3-254ENST00000637050 AVENQ9NQS1 362 aaPredicted RBP19.56■□□□□ 0.72
CLN3-254ENST00000637050 COG5Q9UP83 839 aa19.56■□□□□ 0.72
CLN3-254ENST00000637050 JRKLQ9Y4A0 524 aa19.56■□□□□ 0.72
CLN3-254ENST00000637050 MICAL3Q7RTP6 2002 aa19.55■□□□□ 0.72
CLN3-254ENST00000637050 HCRTO43612 131 aa19.55■□□□□ 0.72
CLN3-254ENST00000637050 RNASELQ05823 741 aaKnown RBP19.55■□□□□ 0.72
CLN3-254ENST00000637050 SPATA18Q8TC71 538 aa19.55■□□□□ 0.72
CLN3-254ENST00000637050 PRDM5Q9NQX1 630 aaPredicted RBP19.55■□□□□ 0.72
CLN3-254ENST00000637050 ADAM22Q9P0K1 906 aa19.55■□□□□ 0.72
CLN3-254ENST00000637050 CTTNBP2NLQ9P2B4 639 aa19.55■□□□□ 0.72
CLN3-254ENST00000637050 UVRAGQ9P2Y5 699 aa19.55■□□□□ 0.72
CLN3-254ENST00000637050 CNOT8Q9UFF9 292 aaKnown RBP19.55■□□□□ 0.72
CLN3-254ENST00000637050 TMEM189-UBE2V1I3L0A0 370 aa19.54■□□□□ 0.72
CLN3-254ENST00000637050 M0QZQ0 153 aa19.54■□□□□ 0.72
CLN3-254ENST00000637050 ATMINO43313 823 aaPredicted RBP19.54■□□□□ 0.72
CLN3-254ENST00000637050 URI1O94763 535 aaPredicted RBP19.54■□□□□ 0.72
CLN3-254ENST00000637050 KIF4AO95239 1232 aa19.54■□□□□ 0.72
CLN3-254ENST00000637050 PDGFRBP09619 1106 aa19.54■□□□□ 0.72
CLN3-254ENST00000637050 RAG1P15918 1043 aa19.54■□□□□ 0.72
CLN3-254ENST00000637050 LHX1P48742 406 aa19.54■□□□□ 0.72
CLN3-254ENST00000637050 GATMP50440 423 aa19.54■□□□□ 0.72
CLN3-254ENST00000637050 PPP1R26Q5T8A7 1209 aaPredicted RBP19.54■□□□□ 0.72
CLN3-254ENST00000637050 ARHGAP17Q68EM7 881 aa19.54■□□□□ 0.72
CLN3-254ENST00000637050 MFSD5Q6N075 450 aa19.54■□□□□ 0.72
CLN3-254ENST00000637050 LIN28BQ6ZN17 250 aaKnown RBP eCLIP19.54■□□□□ 0.72
CLN3-254ENST00000637050 MMS22LQ6ZRQ5 1243 aa19.54■□□□□ 0.72
CLN3-254ENST00000637050 TNIP3Q96KP6 325 aa19.54■□□□□ 0.72
CLN3-254ENST00000637050 FAM193BQ96PV7 902 aaPredicted RBP19.54■□□□□ 0.72
CLN3-254ENST00000637050 C11orf70Q9BRQ4 267 aa19.54■□□□□ 0.72
CLN3-254ENST00000637050 L2HGDHQ9H9P8 463 aa19.54■□□□□ 0.72
CLN3-254ENST00000637050 TSPAN16Q9UKR8 245 aa19.54■□□□□ 0.72
CLN3-254ENST00000637050 M0QYV0 167 aa19.53■□□□□ 0.72
CLN3-254ENST00000637050 ENC1O14682 589 aa19.53■□□□□ 0.72
CLN3-254ENST00000637050 ATP1A1P05023 1023 aaKnown RBP19.53■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms