RNA–Protein interactions for RNA: ENST00000636853.1

CLN3-251, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,289 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-251ENST00000636853 HES2Q9Y543 173 aa16.57■□□□□ 0.24
CLN3-251ENST00000636853 GOLGA8SH3BPF8 625 aa16.56■□□□□ 0.24
CLN3-251ENST00000636853 MED7O43513 233 aa16.56■□□□□ 0.24
CLN3-251ENST00000636853 CILPO75339 1184 aa16.56■□□□□ 0.24
CLN3-251ENST00000636853 PAEPP09466 180 aa16.56■□□□□ 0.24
CLN3-251ENST00000636853 FNTAP49354 379 aa16.56■□□□□ 0.24
CLN3-251ENST00000636853 DRG2P55039 364 aaKnown RBP16.56■□□□□ 0.24
CLN3-251ENST00000636853 BEX3Q00994 111 aa16.56■□□□□ 0.24
CLN3-251ENST00000636853 PTPN11Q06124 597 aaPredicted RBP16.56■□□□□ 0.24
CLN3-251ENST00000636853 PPP1R15BQ5SWA1 713 aa16.56■□□□□ 0.24
CLN3-251ENST00000636853 CEP85LQ5SZL2 805 aa16.56■□□□□ 0.24
CLN3-251ENST00000636853 DPH6Q7L8W6 267 aa16.56■□□□□ 0.24
CLN3-251ENST00000636853 KATNAL2Q8IYT4 538 aa16.56■□□□□ 0.24
CLN3-251ENST00000636853 SH2D3CQ8N5H7 860 aa16.56■□□□□ 0.24
CLN3-251ENST00000636853 DNAJB3Q8WWF6 145 aa16.56■□□□□ 0.24
CLN3-251ENST00000636853 RNF25Q96BH1 459 aaPredicted RBP16.56■□□□□ 0.24
CLN3-251ENST00000636853 TMEM176AQ96HP8 235 aa16.56■□□□□ 0.24
CLN3-251ENST00000636853 VRTNQ9H8Y1 702 aa16.56■□□□□ 0.24
CLN3-251ENST00000636853 RNF19AQ9NV58 838 aa16.56■□□□□ 0.24
CLN3-251ENST00000636853 R3HDM2Q9Y2K5 976 aaKnown RBP16.56■□□□□ 0.24
CLN3-251ENST00000636853 ATP8A1Q9Y2Q0 1164 aa16.56■□□□□ 0.24
CLN3-251ENST00000636853 MANSC4A6NHS7 340 aaPredicted RBP16.56■□□□□ 0.24
CLN3-251ENST00000636853 MYO1CO00159 1063 aa16.56■□□□□ 0.24
CLN3-251ENST00000636853 MYL3P08590 195 aa16.56■□□□□ 0.24
CLN3-251ENST00000636853 MAN1A1P33908 653 aa16.56■□□□□ 0.24
CLN3-251ENST00000636853 RBP5P82980 135 aa16.56■□□□□ 0.24
CLN3-251ENST00000636853 ZNF200P98182 395 aaPredicted RBP16.56■□□□□ 0.24
CLN3-251ENST00000636853 DNAJC21Q5F1R6 531 aaKnown RBP16.56■□□□□ 0.24
CLN3-251ENST00000636853 SRLQ86TD4 932 aa16.56■□□□□ 0.24
CLN3-251ENST00000636853 CD302Q8IX05 232 aa16.56■□□□□ 0.24
CLN3-251ENST00000636853 FAM118BQ9BPY3 351 aa16.56■□□□□ 0.24
CLN3-251ENST00000636853 LHX5Q9H2C1 402 aa16.56■□□□□ 0.24
CLN3-251ENST00000636853 ITGA11Q9UKX5 1188 aa16.56■□□□□ 0.24
CLN3-251ENST00000636853 PI4K2BG5E9Z4 385 aa16.55■□□□□ 0.24
CLN3-251ENST00000636853 H0YGN5 161 aa16.55■□□□□ 0.24
CLN3-251ENST00000636853 MICAL2O94851 1124 aa16.55■□□□□ 0.24
CLN3-251ENST00000636853 ECEL1O95672 775 aa16.55■□□□□ 0.24
CLN3-251ENST00000636853 P4HA1P13674 534 aa16.55■□□□□ 0.24
CLN3-251ENST00000636853 PPP1R7Q15435 360 aa16.55■□□□□ 0.24
CLN3-251ENST00000636853 DCAF4L1Q3SXM0 396 aa16.55■□□□□ 0.24
CLN3-251ENST00000636853 ZFYVE27Q5T4F4 411 aa16.55■□□□□ 0.24
CLN3-251ENST00000636853 C17orf99Q6UX52 265 aa16.55■□□□□ 0.24
CLN3-251ENST00000636853 C3orf20Q8ND61 904 aa16.55■□□□□ 0.24
CLN3-251ENST00000636853 HEXIM2Q96MH2 286 aaKnown RBP16.55■□□□□ 0.24
CLN3-251ENST00000636853 ZMAT2Q96NC0 199 aaKnown RBP16.55■□□□□ 0.24
CLN3-251ENST00000636853 RUNDC3BQ96NL0 473 aa16.55■□□□□ 0.24
CLN3-251ENST00000636853 CPXM1Q96SM3 734 aa16.55■□□□□ 0.24
CLN3-251ENST00000636853 OSBPL8Q9BZF1 889 aa16.55■□□□□ 0.24
CLN3-251ENST00000636853 CYP3A43Q9HB55 503 aa16.55■□□□□ 0.24
CLN3-251ENST00000636853 NFS1Q9Y697 457 aa16.55■□□□□ 0.24
CLN3-251ENST00000636853 TRPM7Q96QT4 1865 aa16.55■□□□□ 0.24
CLN3-251ENST00000636853 SMIM35A0A1B0GVV1 85 aa16.54■□□□□ 0.24
CLN3-251ENST00000636853 MBLAC1A4D2B0 266 aaPredicted RBP16.54■□□□□ 0.24
CLN3-251ENST00000636853 TREHO43280 583 aa16.54■□□□□ 0.24
CLN3-251ENST00000636853 PSEN2P49810 448 aa16.54■□□□□ 0.24
CLN3-251ENST00000636853 KLF1Q13351 362 aaPredicted RBP16.54■□□□□ 0.24
CLN3-251ENST00000636853 TXNRD3NBQ6F5E7 133 aa16.54■□□□□ 0.24
CLN3-251ENST00000636853 SLC27A1Q6PCB7 646 aa16.54■□□□□ 0.24
CLN3-251ENST00000636853 EXD1Q8NHP7 514 aa16.54■□□□□ 0.24
CLN3-251ENST00000636853 MAIP1Q8WWC4 291 aa16.54■□□□□ 0.24
CLN3-251ENST00000636853 USP6NLQ92738 828 aa16.54■□□□□ 0.24
CLN3-251ENST00000636853 FAXDC2Q96IV6 333 aa16.54■□□□□ 0.24
CLN3-251ENST00000636853 DCLK3Q9C098 648 aa16.54■□□□□ 0.24
CLN3-251ENST00000636853 PASKQ96RG2 1323 aa16.54■□□□□ 0.24
CLN3-251ENST00000636853 SCN1AP35498 2009 aa16.54■□□□□ 0.24
CLN3-251ENST00000636853 RFC1P35251 1148 aaPredicted RBP16.54■□□□□ 0.24
CLN3-251ENST00000636853 NDST1P52848 882 aa16.54■□□□□ 0.24
CLN3-251ENST00000636853 KRT17Q04695 432 aa16.54■□□□□ 0.24
CLN3-251ENST00000636853 MTMR3Q13615 1198 aa16.54■□□□□ 0.24
CLN3-251ENST00000636853 GLRA4Q5JXX5 417 aa16.54■□□□□ 0.24
CLN3-251ENST00000636853 LEKR1Q6ZMV7 388 aa16.54■□□□□ 0.24
CLN3-251ENST00000636853 TMEM40Q8WWA1 233 aa16.54■□□□□ 0.24
CLN3-251ENST00000636853 ACSF2Q96CM8 615 aaPredicted RBP16.54■□□□□ 0.24
CLN3-251ENST00000636853 APOL6Q9BWW8 343 aa16.54■□□□□ 0.24
CLN3-251ENST00000636853 TXLNGYQ9BZA5 131 aa16.54■□□□□ 0.24
CLN3-251ENST00000636853 PPEF2O14830 753 aa16.53■□□□□ 0.24
CLN3-251ENST00000636853 PPFIA2O75334 1257 aa16.53■□□□□ 0.24
CLN3-251ENST00000636853 ERBB2P04626 1255 aa16.53■□□□□ 0.24
CLN3-251ENST00000636853 DARSP14868 501 aaKnown RBP16.53■□□□□ 0.24
CLN3-251ENST00000636853 PSMC1P62191 440 aaKnown RBP16.53■□□□□ 0.24
CLN3-251ENST00000636853 LRIG3Q6UXM1 1119 aa16.53■□□□□ 0.24
CLN3-251ENST00000636853 IFNL1Q8IU54 200 aa16.53■□□□□ 0.24
CLN3-251ENST00000636853 JOSD2Q8TAC2 188 aa16.53■□□□□ 0.24
CLN3-251ENST00000636853 UBA3Q8TBC4 463 aa16.53■□□□□ 0.24
CLN3-251ENST00000636853 CENPHQ9H3R5 247 aa16.53■□□□□ 0.24
CLN3-251ENST00000636853 NXF3Q9H4D5 531 aaKnown RBP16.53■□□□□ 0.24
CLN3-251ENST00000636853 SYNCQ9H7C4 482 aa16.53■□□□□ 0.24
CLN3-251ENST00000636853 TUBGCP4Q9UGJ1 667 aa16.53■□□□□ 0.24
CLN3-251ENST00000636853 STRIP2Q9ULQ0 834 aa16.53■□□□□ 0.24
CLN3-251ENST00000636853 WDR3Q9UNX4 943 aaKnown RBP eCLIP16.53■□□□□ 0.24
CLN3-251ENST00000636853 M0QYV0 167 aa16.53■□□□□ 0.24
CLN3-251ENST00000636853 KRT10P13645 584 aa16.53■□□□□ 0.24
CLN3-251ENST00000636853 TAP1Q03518 808 aa16.53■□□□□ 0.24
CLN3-251ENST00000636853 ADCY2Q08462 1091 aa16.53■□□□□ 0.24
CLN3-251ENST00000636853 ZNF844Q08AG5 666 aa16.53■□□□□ 0.24
CLN3-251ENST00000636853 KAZNQ674X7 775 aa16.53■□□□□ 0.24
CLN3-251ENST00000636853 NOTUMQ6P988 496 aa16.53■□□□□ 0.24
CLN3-251ENST00000636853 NT5DC4Q86YG4 428 aa16.53■□□□□ 0.24
CLN3-251ENST00000636853 C18orf25Q96B23 403 aaPredicted RBP16.53■□□□□ 0.24
CLN3-251ENST00000636853 SNX27Q96L92 541 aa16.53■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms