RNA–Protein interactions for RNA: ENST00000636685.1

CLN3-249, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 801 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-249ENST00000636685 SPATA31C1P0DKV0 1188 aa15.85■□□□□ 0.13
CLN3-249ENST00000636685 RPS6KB1P23443 525 aa15.85■□□□□ 0.13
CLN3-249ENST00000636685 CDC25CP30307 473 aa15.85■□□□□ 0.13
CLN3-249ENST00000636685 ATXN3P54252 364 aaPredicted RBP15.85■□□□□ 0.13
CLN3-249ENST00000636685 C19orf57Q0VDD7 668 aa15.85■□□□□ 0.13
CLN3-249ENST00000636685 SLC23A3Q6PIS1 610 aa15.85■□□□□ 0.13
CLN3-249ENST00000636685 LPCAT2Q7L5N7 544 aa15.85■□□□□ 0.13
CLN3-249ENST00000636685 FAM177A1Q8N128 213 aaPredicted RBP15.85■□□□□ 0.13
CLN3-249ENST00000636685 PNPLA1Q8N8W4 532 aa15.85■□□□□ 0.13
CLN3-249ENST00000636685 OR2I1PQ8NGU4 316 aa15.85■□□□□ 0.13
CLN3-249ENST00000636685 CD101Q93033 1021 aa15.85■□□□□ 0.13
CLN3-249ENST00000636685 CRELD1Q96HD1 420 aa15.85■□□□□ 0.13
CLN3-249ENST00000636685 CAMK1GQ96NX5 476 aa15.85■□□□□ 0.13
CLN3-249ENST00000636685 ACAP3Q96P50 834 aa15.85■□□□□ 0.13
CLN3-249ENST00000636685 GCNAQ96QF7 691 aa15.85■□□□□ 0.13
CLN3-249ENST00000636685 FNBP1Q96RU3 617 aa15.85■□□□□ 0.13
CLN3-249ENST00000636685 TTC12Q9H892 705 aaPredicted RBP15.85■□□□□ 0.13
CLN3-249ENST00000636685 SCUBE2Q9NQ36 999 aa15.85■□□□□ 0.13
CLN3-249ENST00000636685 CIZ1Q9ULV3 898 aaPredicted RBP15.85■□□□□ 0.13
CLN3-249ENST00000636685 PLXND1Q9Y4D7 1925 aa15.85■□□□□ 0.13
CLN3-249ENST00000636685 GOLGA4Q13439 2230 aaKnown RBP15.84■□□□□ 0.13
CLN3-249ENST00000636685 TENM4Q6N022 2769 aa15.84■□□□□ 0.13
CLN3-249ENST00000636685 MAP3K13O43283 966 aa15.84■□□□□ 0.13
CLN3-249ENST00000636685 LARGE1O95461 756 aa15.84■□□□□ 0.13
CLN3-249ENST00000636685 CENPBP07199 599 aaPredicted RBP15.84■□□□□ 0.13
CLN3-249ENST00000636685 CYP11B2P19099 503 aa15.84■□□□□ 0.13
CLN3-249ENST00000636685 TXKP42681 527 aa15.84■□□□□ 0.13
CLN3-249ENST00000636685 EFNA5P52803 228 aa15.84■□□□□ 0.13
CLN3-249ENST00000636685 SEC13P55735 322 aa15.84■□□□□ 0.13
CLN3-249ENST00000636685 EVCP57679 992 aa15.84■□□□□ 0.13
CLN3-249ENST00000636685 BFSP1Q12934 665 aa15.84■□□□□ 0.13
CLN3-249ENST00000636685 PPP2R5AQ15172 486 aa15.84■□□□□ 0.13
CLN3-249ENST00000636685 CALCRLQ16602 461 aa15.84■□□□□ 0.13
CLN3-249ENST00000636685 C2orf27AQ580R0 203 aa15.84■□□□□ 0.13
CLN3-249ENST00000636685 CC2D1AQ6P1N0 951 aaPredicted RBP15.84■□□□□ 0.13
CLN3-249ENST00000636685 PADI6Q6TGC4 694 aa15.84■□□□□ 0.13
CLN3-249ENST00000636685 USP37Q86T82 979 aa15.84■□□□□ 0.13
CLN3-249ENST00000636685 MAB21L3Q8N8X9 362 aa15.84■□□□□ 0.13
CLN3-249ENST00000636685 OLIG1Q8TAK6 271 aa15.84■□□□□ 0.13
CLN3-249ENST00000636685 USP33Q8TEY7 942 aa15.84■□□□□ 0.13
CLN3-249ENST00000636685 EXOC4Q96A65 974 aa15.84■□□□□ 0.13
CLN3-249ENST00000636685 NACC1Q96RE7 527 aa15.84■□□□□ 0.13
CLN3-249ENST00000636685 SEPT5Q99719 369 aaPredicted RBP15.84■□□□□ 0.13
CLN3-249ENST00000636685 ACO2Q99798 780 aaKnown RBP15.84■□□□□ 0.13
CLN3-249ENST00000636685 ECT2Q9H8V3 914 aa15.84■□□□□ 0.13
CLN3-249ENST00000636685 PTPRHQ9HD43 1115 aa15.84■□□□□ 0.13
CLN3-249ENST00000636685 GJB4Q9NTQ9 266 aa15.84■□□□□ 0.13
CLN3-249ENST00000636685 KALRNO60229 2985 aa15.84■□□□□ 0.13
CLN3-249ENST00000636685 K7ERI5 159 aa15.83■□□□□ 0.12
CLN3-249ENST00000636685 CPLX1O14810 134 aa15.83■□□□□ 0.12
CLN3-249ENST00000636685 OPHN1O60890 802 aa15.83■□□□□ 0.12
CLN3-249ENST00000636685 CD59P13987 128 aa15.83■□□□□ 0.12
CLN3-249ENST00000636685 HNRNPLP14866 589 aaKnown RBP eCLIP15.83■□□□□ 0.12
CLN3-249ENST00000636685 ATF6P18850 670 aa15.83■□□□□ 0.12
CLN3-249ENST00000636685 HSPA4P34932 840 aa15.83■□□□□ 0.12
CLN3-249ENST00000636685 AVPR1AP37288 418 aa15.83■□□□□ 0.12
CLN3-249ENST00000636685 PDGFRLQ15198 375 aa15.83■□□□□ 0.12
CLN3-249ENST00000636685 CATSPER3Q86XQ3 398 aa15.83■□□□□ 0.12
CLN3-249ENST00000636685 CPA6Q8N4T0 437 aa15.83■□□□□ 0.12
CLN3-249ENST00000636685 CCDC33Q8N5R6 958 aa15.83■□□□□ 0.12
CLN3-249ENST00000636685 GIPC2Q8TF65 315 aa15.83■□□□□ 0.12
CLN3-249ENST00000636685 ADAMTS14Q8WXS8 1223 aa15.83■□□□□ 0.12
CLN3-249ENST00000636685 OXCT2Q9BYC2 517 aaPredicted RBP15.83■□□□□ 0.12
CLN3-249ENST00000636685 TDP1Q9NUW8 608 aa15.83■□□□□ 0.12
CLN3-249ENST00000636685 DAXXQ9UER7 740 aaPredicted RBP15.83■□□□□ 0.12
CLN3-249ENST00000636685 PILRBQ9UKJ0 227 aa15.83■□□□□ 0.12
CLN3-249ENST00000636685 SNX14Q9Y5W7 946 aa15.83■□□□□ 0.12
CLN3-249ENST00000636685 MED24O75448 989 aa15.82■□□□□ 0.12
CLN3-249ENST00000636685 C1QL1O75973 258 aa15.82■□□□□ 0.12
CLN3-249ENST00000636685 FTH1P19P0C7X4 201 aa15.82■□□□□ 0.12
CLN3-249ENST00000636685 HARSP12081 509 aaKnown RBP15.82■□□□□ 0.12
CLN3-249ENST00000636685 ITPKAP23677 461 aa15.82■□□□□ 0.12
CLN3-249ENST00000636685 NMT1P30419 496 aaKnown RBP15.82■□□□□ 0.12
CLN3-249ENST00000636685 P2RY2P41231 377 aa15.82■□□□□ 0.12
CLN3-249ENST00000636685 MYBPC2Q14324 1141 aa15.82■□□□□ 0.12
CLN3-249ENST00000636685 TRIP6Q15654 476 aaKnown RBP15.82■□□□□ 0.12
CLN3-249ENST00000636685 SEZ6Q53EL9 994 aa15.82■□□□□ 0.12
CLN3-249ENST00000636685 LYSMD4Q5XG99 296 aa15.82■□□□□ 0.12
CLN3-249ENST00000636685 TMEM150AQ86TG1 271 aa15.82■□□□□ 0.12
CLN3-249ENST00000636685 MINDY1Q8N5J2 469 aa15.82■□□□□ 0.12
CLN3-249ENST00000636685 KCNB2Q92953 911 aa15.82■□□□□ 0.12
CLN3-249ENST00000636685 IFT74Q96LB3 600 aa15.82■□□□□ 0.12
CLN3-249ENST00000636685 SLC6A14Q9UN76 642 aa15.82■□□□□ 0.12
CLN3-249ENST00000636685 TSC2P49815 1807 aa15.82■□□□□ 0.12
CLN3-249ENST00000636685 MYO18AQ92614 2054 aaKnown RBP15.82■□□□□ 0.12
CLN3-249ENST00000636685 ARHGEF35A5YM69 484 aa15.81■□□□□ 0.12
CLN3-249ENST00000636685 SH3BP5O60239 455 aa15.81■□□□□ 0.12
CLN3-249ENST00000636685 DTNBO60941 627 aa15.81■□□□□ 0.12
CLN3-249ENST00000636685 HELZP42694 1942 aaKnown RBP15.81■□□□□ 0.12
CLN3-249ENST00000636685 GFPT1Q06210 699 aaPredicted RBP15.81■□□□□ 0.12
CLN3-249ENST00000636685 SPAG1Q07617 926 aa15.81■□□□□ 0.12
CLN3-249ENST00000636685 HNRNPDQ14103 355 aaKnown RBP15.81■□□□□ 0.12
CLN3-249ENST00000636685 VEPH1Q14D04 833 aa15.81■□□□□ 0.12
CLN3-249ENST00000636685 TAF12Q16514 161 aa15.81■□□□□ 0.12
CLN3-249ENST00000636685 CRY1Q16526 586 aa15.81■□□□□ 0.12
CLN3-249ENST00000636685 SLC10A6Q3KNW5 377 aa15.81■□□□□ 0.12
CLN3-249ENST00000636685 MGAT5BQ3V5L5 792 aa15.81■□□□□ 0.12
CLN3-249ENST00000636685 PEAR1Q5VY43 1037 aaPredicted RBP15.81■□□□□ 0.12
CLN3-249ENST00000636685 TXNDC8Q6A555 127 aa15.81■□□□□ 0.12
CLN3-249ENST00000636685 OVOS1Q6IE37 1185 aa15.81■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms