RNA–Protein interactions for RNA: ENST00000619445.1

UPF3B-204, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 5 BASIC

Gene UPF3B, Length 1,385 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-204ENST00000619445 ADSSP30520 456 aa12.84□□□□□ -0.35
UPF3B-204ENST00000619445 KPNA1P52294 538 aaPredicted RBP12.84□□□□□ -0.35
UPF3B-204ENST00000619445 AMPD3Q01432 767 aa12.84□□□□□ -0.35
UPF3B-204ENST00000619445 MYL7Q01449 175 aa12.84□□□□□ -0.35
UPF3B-204ENST00000619445 MTAPQ13126 283 aa12.84□□□□□ -0.35
UPF3B-204ENST00000619445 FZD5Q13467 585 aa12.84□□□□□ -0.35
UPF3B-204ENST00000619445 SURF1Q15526 300 aa12.84□□□□□ -0.35
UPF3B-204ENST00000619445 GPR158Q5T848 1215 aa12.84□□□□□ -0.35
UPF3B-204ENST00000619445 POTEHQ6S545 545 aa12.84□□□□□ -0.35
UPF3B-204ENST00000619445 CRELD2Q6UXH1 353 aaPredicted RBP12.84□□□□□ -0.35
UPF3B-204ENST00000619445 USP49Q70CQ1 688 aa12.84□□□□□ -0.35
UPF3B-204ENST00000619445 GAREM2Q75VX8 874 aa12.84□□□□□ -0.35
UPF3B-204ENST00000619445 SYNPOQ8N3V7 929 aa12.84□□□□□ -0.35
UPF3B-204ENST00000619445 OR10T2Q8NGX3 314 aa12.84□□□□□ -0.35
UPF3B-204ENST00000619445 LEO1Q8WVC0 666 aaPredicted RBP12.84□□□□□ -0.35
UPF3B-204ENST00000619445 EXOC4Q96A65 974 aa12.84□□□□□ -0.35
UPF3B-204ENST00000619445 TNMDQ9H2S6 317 aa12.84□□□□□ -0.35
UPF3B-204ENST00000619445 CRISPLD1Q9H336 500 aa12.84□□□□□ -0.35
UPF3B-204ENST00000619445 LMAN1LQ9HAT1 526 aa12.84□□□□□ -0.35
UPF3B-204ENST00000619445 ABCB6Q9NP58 842 aa12.84□□□□□ -0.35
UPF3B-204ENST00000619445 RBAKQ9NYW8 714 aaPredicted RBP12.84□□□□□ -0.35
UPF3B-204ENST00000619445 NCDNQ9UBB6 729 aa12.84□□□□□ -0.35
UPF3B-204ENST00000619445 RAB23Q9ULC3 237 aa12.84□□□□□ -0.35
UPF3B-204ENST00000619445 PCDHB5Q9Y5E4 795 aa12.84□□□□□ -0.35
UPF3B-204ENST00000619445 ZNF638Q14966 1978 aaKnown RBP12.83□□□□□ -0.35
UPF3B-204ENST00000619445 EXTL3O43909 919 aa12.83□□□□□ -0.36
UPF3B-204ENST00000619445 LILRB5O75023 590 aa12.83□□□□□ -0.36
UPF3B-204ENST00000619445 CSH1P0DML2 217 aa12.83□□□□□ -0.36
UPF3B-204ENST00000619445 CSH2P0DML3 217 aa12.83□□□□□ -0.36
UPF3B-204ENST00000619445 HAPLN1P10915 354 aaPredicted RBP12.83□□□□□ -0.36
UPF3B-204ENST00000619445 RPL10AP62906 217 aaKnown RBP12.83□□□□□ -0.36
UPF3B-204ENST00000619445 TFAMQ00059 246 aaKnown RBP12.83□□□□□ -0.36
UPF3B-204ENST00000619445 AMPD2Q01433 879 aa12.83□□□□□ -0.36
UPF3B-204ENST00000619445 PUM1Q14671 1186 aaKnown RBP eCLIP12.83□□□□□ -0.36
UPF3B-204ENST00000619445 WSCD1Q658N2 575 aa12.83□□□□□ -0.36
UPF3B-204ENST00000619445 EFCAB13Q8IY85 973 aa12.83□□□□□ -0.36
UPF3B-204ENST00000619445 ZNF687Q8N1G0 1237 aa12.83□□□□□ -0.36
UPF3B-204ENST00000619445 SPEM1Q8N4L4 309 aa12.83□□□□□ -0.36
UPF3B-204ENST00000619445 CELF5Q8N6W0 485 aaKnown RBP12.83□□□□□ -0.36
UPF3B-204ENST00000619445 BPIFB1Q8TDL5 484 aa12.83□□□□□ -0.36
UPF3B-204ENST00000619445 ZNF396Q96N95 335 aaPredicted RBP12.83□□□□□ -0.36
UPF3B-204ENST00000619445 ACBD6Q9BR61 282 aa12.83□□□□□ -0.36
UPF3B-204ENST00000619445 FAM213AQ9BRX8 229 aa12.83□□□□□ -0.36
UPF3B-204ENST00000619445 KIF9Q9HAQ2 790 aa12.83□□□□□ -0.36
UPF3B-204ENST00000619445 KIAA1586Q9HCI6 787 aa12.83□□□□□ -0.36
UPF3B-204ENST00000619445 PANK4Q9NVE7 773 aa12.83□□□□□ -0.36
UPF3B-204ENST00000619445 UXTQ9UBK9 157 aaPredicted RBP12.83□□□□□ -0.36
UPF3B-204ENST00000619445 FRYLO94915 3013 aa12.83□□□□□ -0.36
UPF3B-204ENST00000619445 DENND4CQ5VZ89 1909 aa12.83□□□□□ -0.36
UPF3B-204ENST00000619445 MYBPHLA2RUH7 354 aa12.82□□□□□ -0.36
UPF3B-204ENST00000619445 SHISA7A6NL88 538 aa12.82□□□□□ -0.36
UPF3B-204ENST00000619445 TISP43B9A030 160 aa12.82□□□□□ -0.36
UPF3B-204ENST00000619445 STX6O43752 255 aa12.82□□□□□ -0.36
UPF3B-204ENST00000619445 PAPSS2O95340 614 aaPredicted RBP12.82□□□□□ -0.36
UPF3B-204ENST00000619445 CCNE1P24864 410 aa12.82□□□□□ -0.36
UPF3B-204ENST00000619445 PCSK1P29120 753 aa12.82□□□□□ -0.36
UPF3B-204ENST00000619445 CNR2P34972 360 aa12.82□□□□□ -0.36
UPF3B-204ENST00000619445 AVPR1AP37288 418 aa12.82□□□□□ -0.36
UPF3B-204ENST00000619445 CXCL12P48061 93 aa12.82□□□□□ -0.36
UPF3B-204ENST00000619445 LHX1P48742 406 aa12.82□□□□□ -0.36
UPF3B-204ENST00000619445 NASPP49321 788 aaPredicted RBP12.82□□□□□ -0.36
UPF3B-204ENST00000619445 RBP5P82980 135 aa12.82□□□□□ -0.36
UPF3B-204ENST00000619445 CEBPZQ03701 1054 aaKnown RBP12.82□□□□□ -0.36
UPF3B-204ENST00000619445 MYO1EQ12965 1108 aa12.82□□□□□ -0.36
UPF3B-204ENST00000619445 STK38Q15208 465 aa12.82□□□□□ -0.36
UPF3B-204ENST00000619445 DPH6Q7L8W6 267 aa12.82□□□□□ -0.36
UPF3B-204ENST00000619445 ANKRD36BP1Q96IX9 119 aa12.82□□□□□ -0.36
UPF3B-204ENST00000619445 CEP295NLQ96MC4 621 aa12.82□□□□□ -0.36
UPF3B-204ENST00000619445 CLIC6Q96NY7 704 aa12.82□□□□□ -0.36
UPF3B-204ENST00000619445 TMEM209Q96SK2 561 aa12.82□□□□□ -0.36
UPF3B-204ENST00000619445 MAGEF1Q9HAY2 307 aa12.82□□□□□ -0.36
UPF3B-204ENST00000619445 GDAP2Q9NXN4 497 aa12.82□□□□□ -0.36
UPF3B-204ENST00000619445 ABI2Q9NYB9 513 aaPredicted RBP12.82□□□□□ -0.36
UPF3B-204ENST00000619445 GMEB2Q9UKD1 530 aa12.82□□□□□ -0.36
UPF3B-204ENST00000619445 AGAP1Q9UPQ3 857 aa12.82□□□□□ -0.36
UPF3B-204ENST00000619445 SMG5Q9UPR3 1016 aaKnown RBP12.82□□□□□ -0.36
UPF3B-204ENST00000619445 PRR5-ARHGAP8B1AHC4 643 aa12.81□□□□□ -0.36
UPF3B-204ENST00000619445 K7ELQ4 463 aaPredicted RBP12.81□□□□□ -0.36
UPF3B-204ENST00000619445 PPP6R2O75170 966 aa12.81□□□□□ -0.36
UPF3B-204ENST00000619445 ITGB3P05106 788 aa12.81□□□□□ -0.36
UPF3B-204ENST00000619445 TMEM191BP0C7N4 346 aa12.81□□□□□ -0.36
UPF3B-204ENST00000619445 CHRNB1P11230 501 aa12.81□□□□□ -0.36
UPF3B-204ENST00000619445 ATF6P18850 670 aa12.81□□□□□ -0.36
UPF3B-204ENST00000619445 POLR2BP30876 1174 aaKnown RBP12.81□□□□□ -0.36
UPF3B-204ENST00000619445 SNRPFP62306 86 aaKnown RBP12.81□□□□□ -0.36
UPF3B-204ENST00000619445 ARHGAP8P85298 464 aa12.81□□□□□ -0.36
UPF3B-204ENST00000619445 MAPRE1Q15691 268 aaKnown RBP12.81□□□□□ -0.36
UPF3B-204ENST00000619445 KIAA2013Q8IYS2 634 aa12.81□□□□□ -0.36
UPF3B-204ENST00000619445 CMTM8Q8IZV2 173 aa12.81□□□□□ -0.36
UPF3B-204ENST00000619445 GPD1LQ8N335 351 aa12.81□□□□□ -0.36
UPF3B-204ENST00000619445 TTC9BQ8N6N2 239 aa12.81□□□□□ -0.36
UPF3B-204ENST00000619445 TOP6BLQ8N6T0 577 aa12.81□□□□□ -0.36
UPF3B-204ENST00000619445 MRPS31Q92665 395 aaKnown RBP12.81□□□□□ -0.36
UPF3B-204ENST00000619445 FUBP3Q96I24 572 aaKnown RBP eCLIP12.81□□□□□ -0.36
UPF3B-204ENST00000619445 USP28Q96RU2 1077 aa12.81□□□□□ -0.36
UPF3B-204ENST00000619445 MKNK1Q9BUB5 465 aa12.81□□□□□ -0.36
UPF3B-204ENST00000619445 TBC1D7Q9P0N9 293 aa12.81□□□□□ -0.36
UPF3B-204ENST00000619445 MTMR6Q9Y217 621 aa12.81□□□□□ -0.36
UPF3B-204ENST00000619445 ZNF233A6NK53 670 aa12.81□□□□□ -0.36
UPF3B-204ENST00000619445 SLC38A8A6NNN8 435 aa12.81□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 63.8 ms