RNA–Protein interactions for RNA: ENST00000614678.1

CPNE3-208, Transcript of copine 3, humanhuman

TSL 1 (best)

Gene CPNE3, Length 4,201 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3-208ENST00000614678 MAGEF1Q9HAY2 307 aa6.12□□□□□ -1.43
CPNE3-208ENST00000614678 TRAF3IP3Q9Y228 551 aa6.12□□□□□ -1.43
CPNE3-208ENST00000614678 BACE2Q9Y5Z0 518 aa6.12□□□□□ -1.43
CPNE3-208ENST00000614678 PI4K2BG5E9Z4 385 aa6.12□□□□□ -1.43
CPNE3-208ENST00000614678 SYN3O14994 580 aa6.12□□□□□ -1.43
CPNE3-208ENST00000614678 TRAPPC3O43617 180 aa6.12□□□□□ -1.43
CPNE3-208ENST00000614678 HOXB8P17481 243 aaPredicted RBP6.12□□□□□ -1.43
CPNE3-208ENST00000614678 CD58P19256 250 aa6.12□□□□□ -1.43
CPNE3-208ENST00000614678 GPC5P78333 572 aa6.12□□□□□ -1.43
CPNE3-208ENST00000614678 ITIH3Q06033 890 aa6.12□□□□□ -1.43
CPNE3-208ENST00000614678 DUOXA2Q1HG44 320 aa6.12□□□□□ -1.43
CPNE3-208ENST00000614678 PABPC1LQ4VXU2 614 aaKnown RBP6.12□□□□□ -1.43
CPNE3-208ENST00000614678 DCAF17Q5H9S7 520 aaPredicted RBP6.12□□□□□ -1.43
CPNE3-208ENST00000614678 HS2ST1Q7LGA3 356 aa6.12□□□□□ -1.43
CPNE3-208ENST00000614678 USP37Q86T82 979 aa6.12□□□□□ -1.43
CPNE3-208ENST00000614678 TMC8Q8IU68 726 aa6.12□□□□□ -1.43
CPNE3-208ENST00000614678 ADGRF2Q8IZF7 708 aa6.12□□□□□ -1.43
CPNE3-208ENST00000614678 JAKMIP2Q96AA8 810 aa6.12□□□□□ -1.43
CPNE3-208ENST00000614678 ASIC4Q96FT7 647 aa6.12□□□□□ -1.43
CPNE3-208ENST00000614678 FNBP1Q96RU3 617 aa6.12□□□□□ -1.43
CPNE3-208ENST00000614678 MKNK1Q9BUB5 465 aa6.12□□□□□ -1.43
CPNE3-208ENST00000614678 FAM49BQ9NUQ9 324 aa6.12□□□□□ -1.43
CPNE3-208ENST00000614678 POLR3BQ9NW08 1133 aaPredicted RBP6.12□□□□□ -1.43
CPNE3-208ENST00000614678 MTF2Q9Y483 593 aaPredicted RBP6.12□□□□□ -1.43
CPNE3-208ENST00000614678 ZNF638Q14966 1978 aaKnown RBP6.12□□□□□ -1.43
CPNE3-208ENST00000614678 KIF26AQ9ULI4 1882 aaPredicted RBP6.12□□□□□ -1.43
CPNE3-208ENST00000614678 GREB1Q4ZG55 1949 aa6.11□□□□□ -1.43
CPNE3-208ENST00000614678 PDXKO00764 312 aa6.11□□□□□ -1.43
CPNE3-208ENST00000614678 IL18RAPO95256 599 aa6.11□□□□□ -1.43
CPNE3-208ENST00000614678 LAMP2P13473 410 aa6.11□□□□□ -1.43
CPNE3-208ENST00000614678 CCDC130P13994 396 aa6.11□□□□□ -1.43
CPNE3-208ENST00000614678 BDNFP23560 247 aa6.11□□□□□ -1.43
CPNE3-208ENST00000614678 MORC3Q14149 939 aa6.11□□□□□ -1.43
CPNE3-208ENST00000614678 LIN9Q5TKA1 542 aa6.11□□□□□ -1.43
CPNE3-208ENST00000614678 ZNF658Q5TYW1 1059 aaPredicted RBP6.11□□□□□ -1.43
CPNE3-208ENST00000614678 GJB7Q6PEY0 223 aa6.11□□□□□ -1.43
CPNE3-208ENST00000614678 PAQR9Q6ZVX9 377 aa6.11□□□□□ -1.43
CPNE3-208ENST00000614678 APBB1IPQ7Z5R6 666 aaPredicted RBP6.11□□□□□ -1.43
CPNE3-208ENST00000614678 PCED1BQ96HM7 432 aa6.11□□□□□ -1.43
CPNE3-208ENST00000614678 ZCWPW1Q9H0M4 648 aa6.11□□□□□ -1.43
CPNE3-208ENST00000614678 PTPRDP23468 1912 aa6.11□□□□□ -1.43
CPNE3-208ENST00000614678 KRBA1A5PL33 1030 aa6.11□□□□□ -1.43
CPNE3-208ENST00000614678 OTOL1A6NHN0 477 aaPredicted RBP6.11□□□□□ -1.43
CPNE3-208ENST00000614678 SHISA7A6NL88 538 aa6.11□□□□□ -1.43
CPNE3-208ENST00000614678 NCK2O43639 380 aa6.11□□□□□ -1.43
CPNE3-208ENST00000614678 TADA3O75528 432 aa6.11□□□□□ -1.43
CPNE3-208ENST00000614678 PRAMEF12O95522 483 aa6.11□□□□□ -1.43
CPNE3-208ENST00000614678 VAMP7P51809 220 aa6.11□□□□□ -1.43
CPNE3-208ENST00000614678 GPR17Q13304 367 aa6.11□□□□□ -1.43
CPNE3-208ENST00000614678 PLD1Q13393 1074 aa6.11□□□□□ -1.43
CPNE3-208ENST00000614678 NCOA4Q13772 614 aa6.11□□□□□ -1.43
CPNE3-208ENST00000614678 KCNB1Q14721 858 aa6.11□□□□□ -1.43
CPNE3-208ENST00000614678 MDH1BQ5I0G3 518 aa6.11□□□□□ -1.43
CPNE3-208ENST00000614678 PRSS36Q5K4E3 855 aa6.11□□□□□ -1.43
CPNE3-208ENST00000614678 TTI2Q6NXR4 508 aa6.11□□□□□ -1.43
CPNE3-208ENST00000614678 C15orf39Q6ZRI6 1047 aa6.11□□□□□ -1.43
CPNE3-208ENST00000614678 ACOT1Q86TX2 421 aa6.11□□□□□ -1.43
CPNE3-208ENST00000614678 WDR49Q8IV35 697 aa6.11□□□□□ -1.43
CPNE3-208ENST00000614678 FAM186BQ8IYM0 893 aa6.11□□□□□ -1.43
CPNE3-208ENST00000614678 GUF1Q8N442 669 aaKnown RBP6.11□□□□□ -1.43
CPNE3-208ENST00000614678 SCAMP5Q8TAC9 235 aa6.11□□□□□ -1.43
CPNE3-208ENST00000614678 SHKBP1Q8TBC3 707 aa6.11□□□□□ -1.43
CPNE3-208ENST00000614678 ZNF518BQ9C0D4 1074 aa6.11□□□□□ -1.43
CPNE3-208ENST00000614678 CA14Q9ULX7 337 aa6.11□□□□□ -1.43
CPNE3-208ENST00000614678 GABRDO14764 452 aa6.11□□□□□ -1.43
CPNE3-208ENST00000614678 KINO60870 393 aaKnown RBP6.11□□□□□ -1.43
CPNE3-208ENST00000614678 LDHAP00338 332 aaKnown RBP6.11□□□□□ -1.43
CPNE3-208ENST00000614678 HLA-DRAP01903 254 aa6.11□□□□□ -1.43
CPNE3-208ENST00000614678 CYP11A1P05108 521 aa6.11□□□□□ -1.43
CPNE3-208ENST00000614678 ODC1P11926 461 aa6.11□□□□□ -1.43
CPNE3-208ENST00000614678 ASPAP45381 313 aa6.11□□□□□ -1.43
CPNE3-208ENST00000614678 SOX9P48436 509 aa6.11□□□□□ -1.43
CPNE3-208ENST00000614678 CYP27A1Q02318 531 aa6.11□□□□□ -1.43
CPNE3-208ENST00000614678 TNK2Q07912 1038 aa6.11□□□□□ -1.43
CPNE3-208ENST00000614678 ALCAMQ13740 583 aa6.11□□□□□ -1.43
CPNE3-208ENST00000614678 ZACNQ401N2 412 aa6.11□□□□□ -1.43
CPNE3-208ENST00000614678 FAM78AQ5JUQ0 283 aa6.11□□□□□ -1.43
CPNE3-208ENST00000614678 TXNDC8Q6A555 127 aa6.11□□□□□ -1.43
CPNE3-208ENST00000614678 GPRIN1Q7Z2K8 1008 aa6.11□□□□□ -1.43
CPNE3-208ENST00000614678 DNAJB7Q7Z6W7 309 aaPredicted RBP6.11□□□□□ -1.43
CPNE3-208ENST00000614678 IRF2BP1Q8IU81 584 aa6.11□□□□□ -1.43
CPNE3-208ENST00000614678 SLC44A3Q8N4M1 653 aa6.11□□□□□ -1.43
CPNE3-208ENST00000614678 OR6B3Q8NGW1 331 aa6.11□□□□□ -1.43
CPNE3-208ENST00000614678 NELFBQ8WX92 580 aa6.11□□□□□ -1.43
CPNE3-208ENST00000614678 NDRG1Q92597 394 aaKnown RBP6.11□□□□□ -1.43
CPNE3-208ENST00000614678 ANKRD36BP1Q96IX9 119 aa6.11□□□□□ -1.43
CPNE3-208ENST00000614678 LRRC27Q9C0I9 530 aa6.11□□□□□ -1.43
CPNE3-208ENST00000614678 IL21Q9HBE4 155 aa6.11□□□□□ -1.43
CPNE3-208ENST00000614678 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP6.11□□□□□ -1.43
CPNE3-208ENST00000614678 KCNG1Q9UIX4 513 aa6.11□□□□□ -1.43
CPNE3-208ENST00000614678 AJAP1Q9UKB5 411 aaPredicted RBP6.11□□□□□ -1.43
CPNE3-208ENST00000614678 OBSL1O75147 1896 aa6.11□□□□□ -1.43
CPNE3-208ENST00000614678 ANAPC1Q9H1A4 1944 aa6.11□□□□□ -1.43
CPNE3-208ENST00000614678 C2orf78A6NCI8 922 aa6.1□□□□□ -1.43
CPNE3-208ENST00000614678 TULP2O00295 520 aa6.1□□□□□ -1.43
CPNE3-208ENST00000614678 DCXO43602 365 aa6.1□□□□□ -1.43
CPNE3-208ENST00000614678 PNMA6AP0CW24 399 aaPredicted RBP6.1□□□□□ -1.43
CPNE3-208ENST00000614678 HMGA1P17096 107 aaKnown RBP6.1□□□□□ -1.43
CPNE3-208ENST00000614678 PTPRZ1P23471 2315 aaPredicted RBP6.1□□□□□ -1.43
CPNE3-208ENST00000614678 FSHRP23945 695 aa6.1□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms