RNA–Protein interactions for RNA: ENST00000601689.1

UPF1-212, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 561 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-212ENST00000601689 IGSF9Q9P2J2 1179 aa20.74■□□□□ 0.91
UPF1-212ENST00000601689 NXF1Q9UBU9 619 aaKnown RBP20.74■□□□□ 0.91
UPF1-212ENST00000601689 MUTYHQ9UIF7 546 aa20.74■□□□□ 0.91
UPF1-212ENST00000601689 BIN1O00499 593 aa20.73■□□□□ 0.91
UPF1-212ENST00000601689 SLC16A3O15427 465 aaKnown RBP20.73■□□□□ 0.91
UPF1-212ENST00000601689 FGF19O95750 216 aa20.73■□□□□ 0.91
UPF1-212ENST00000601689 GNL1P36915 607 aaPredicted RBP20.73■□□□□ 0.91
UPF1-212ENST00000601689 PIK3CAP42336 1068 aa20.73■□□□□ 0.91
UPF1-212ENST00000601689 MYL6P60660 151 aa20.73■□□□□ 0.91
UPF1-212ENST00000601689 SOWAHAQ2M3V2 549 aa20.73■□□□□ 0.91
UPF1-212ENST00000601689 ZACNQ401N2 412 aa20.73■□□□□ 0.91
UPF1-212ENST00000601689 INTS6LQ5JSJ4 861 aaKnown RBP20.73■□□□□ 0.91
UPF1-212ENST00000601689 TCERG1LQ5VWI1 586 aa20.73■□□□□ 0.91
UPF1-212ENST00000601689 TDRD10Q5VZ19 366 aaKnown RBP20.73■□□□□ 0.91
UPF1-212ENST00000601689 ANKRD40Q6AI12 368 aa20.73■□□□□ 0.91
UPF1-212ENST00000601689 C4orf50Q6ZRC1 276 aa20.73■□□□□ 0.91
UPF1-212ENST00000601689 SV2AQ7L0J3 742 aa20.73■□□□□ 0.91
UPF1-212ENST00000601689 SPATA2LQ8IUW3 424 aaPredicted RBP20.73■□□□□ 0.91
UPF1-212ENST00000601689 OR6B3Q8NGW1 331 aa20.73■□□□□ 0.91
UPF1-212ENST00000601689 SEPT5Q99719 369 aaPredicted RBP20.73■□□□□ 0.91
UPF1-212ENST00000601689 VRTNQ9H8Y1 702 aa20.73■□□□□ 0.91
UPF1-212ENST00000601689 ABI2Q9NYB9 513 aaPredicted RBP20.73■□□□□ 0.91
UPF1-212ENST00000601689 DNMT3BQ9UBC3 853 aaKnown RBP20.73■□□□□ 0.91
UPF1-212ENST00000601689 LIMD1Q9UGP4 676 aa20.73■□□□□ 0.91
UPF1-212ENST00000601689 CDH9Q9ULB4 789 aa20.73■□□□□ 0.91
UPF1-212ENST00000601689 YIPF1Q9Y548 306 aa20.73■□□□□ 0.91
UPF1-212ENST00000601689 CUL9Q8IWT3 2517 aa20.73■□□□□ 0.91
UPF1-212ENST00000601689 GABRDO14764 452 aa20.72■□□□□ 0.91
UPF1-212ENST00000601689 TACC1O75410 805 aa20.72■□□□□ 0.91
UPF1-212ENST00000601689 RHOP08100 348 aa20.72■□□□□ 0.91
UPF1-212ENST00000601689 WARSP23381 471 aaKnown RBP20.72■□□□□ 0.91
UPF1-212ENST00000601689 DLG4P78352 724 aa20.72■□□□□ 0.91
UPF1-212ENST00000601689 MTMR3Q13615 1198 aa20.72■□□□□ 0.91
UPF1-212ENST00000601689 MORC3Q14149 939 aa20.72■□□□□ 0.91
UPF1-212ENST00000601689 PTPN21Q16825 1174 aa20.72■□□□□ 0.91
UPF1-212ENST00000601689 ATAD1Q8NBU5 361 aa20.72■□□□□ 0.91
UPF1-212ENST00000601689 FAM84AQ96KN4 292 aa20.72■□□□□ 0.91
UPF1-212ENST00000601689 CEP63Q96MT8 703 aa20.72■□□□□ 0.91
UPF1-212ENST00000601689 TMEM209Q96SK2 561 aa20.72■□□□□ 0.91
UPF1-212ENST00000601689 MMRN2Q9H8L6 949 aa20.72■□□□□ 0.91
UPF1-212ENST00000601689 TMEM8AQ9HCN3 771 aa20.72■□□□□ 0.91
UPF1-212ENST00000601689 AVENQ9NQS1 362 aaPredicted RBP20.72■□□□□ 0.91
UPF1-212ENST00000601689 EPS15L1Q9UBC2 864 aa20.72■□□□□ 0.91
UPF1-212ENST00000601689 CDH7Q9ULB5 785 aa20.72■□□□□ 0.91
UPF1-212ENST00000601689 SORCS3Q9UPU3 1222 aa20.72■□□□□ 0.91
UPF1-212ENST00000601689 SLC27A5Q9Y2P5 690 aa20.72■□□□□ 0.91
UPF1-212ENST00000601689 RPL10AP62906 217 aaKnown RBP20.71■□□□□ 0.91
UPF1-212ENST00000601689 PAK1Q13153 545 aa20.71■□□□□ 0.91
UPF1-212ENST00000601689 CCDC40Q4G0X9 1142 aa20.71■□□□□ 0.91
UPF1-212ENST00000601689 DCAF17Q5H9S7 520 aaPredicted RBP20.71■□□□□ 0.91
UPF1-212ENST00000601689 KRT39Q6A163 491 aa20.71■□□□□ 0.91
UPF1-212ENST00000601689 FOXR2Q6PJQ5 311 aa20.71■□□□□ 0.91
UPF1-212ENST00000601689 MTSS1LQ765P7 747 aa20.71■□□□□ 0.91
UPF1-212ENST00000601689 UBALD2Q8IYN6 164 aa20.71■□□□□ 0.91
UPF1-212ENST00000601689 PLEKHO2Q8TD55 490 aa20.71■□□□□ 0.91
UPF1-212ENST00000601689 NELFBQ8WX92 580 aa20.71■□□□□ 0.91
UPF1-212ENST00000601689 GCNAQ96QF7 691 aa20.71■□□□□ 0.91
UPF1-212ENST00000601689 NUP62CLQ9H1M0 184 aa20.71■□□□□ 0.91
UPF1-212ENST00000601689 ARMCX3Q9UH62 379 aaPredicted RBP20.71■□□□□ 0.91
UPF1-212ENST00000601689 DACH1Q9UI36 760 aa20.71■□□□□ 0.91
UPF1-212ENST00000601689 DOCK6Q96HP0 2047 aa20.71■□□□□ 0.91
UPF1-212ENST00000601689 MICAL2O94851 1124 aa20.7■□□□□ 0.9
UPF1-212ENST00000601689 GNA14O95837 355 aa20.7■□□□□ 0.9
UPF1-212ENST00000601689 LAMP2P13473 410 aa20.7■□□□□ 0.9
UPF1-212ENST00000601689 ACAT1P24752 427 aaKnown RBP20.7■□□□□ 0.9
UPF1-212ENST00000601689 GCLMP48507 274 aa20.7■□□□□ 0.9
UPF1-212ENST00000601689 NTHL1P78549 312 aa20.7■□□□□ 0.9
UPF1-212ENST00000601689 CETN1Q12798 172 aa20.7■□□□□ 0.9
UPF1-212ENST00000601689 FILIP1Q7Z7B0 1213 aa20.7■□□□□ 0.9
UPF1-212ENST00000601689 FUBP3Q96I24 572 aaKnown RBP eCLIP20.7■□□□□ 0.9
UPF1-212ENST00000601689 RTP3Q9BQQ7 232 aa20.7■□□□□ 0.9
UPF1-212ENST00000601689 SYT15Q9BQS2 421 aa20.7■□□□□ 0.9
UPF1-212ENST00000601689 GPR88Q9GZN0 384 aa20.7■□□□□ 0.9
UPF1-212ENST00000601689 CLSTN2Q9H4D0 955 aa20.7■□□□□ 0.9
UPF1-212ENST00000601689 ABCB6Q9NP58 842 aa20.7■□□□□ 0.9
UPF1-212ENST00000601689 HCFC1R1Q9NWW0 138 aa20.7■□□□□ 0.9
UPF1-212ENST00000601689 MAGEC2Q9UBF1 373 aaPredicted RBP20.7■□□□□ 0.9
UPF1-212ENST00000601689 GTF3C4Q9UKN8 822 aa20.7■□□□□ 0.9
UPF1-212ENST00000601689 TRIM49BA6NDI0 452 aa20.69■□□□□ 0.9
UPF1-212ENST00000601689 A8MXQ7 604 aa20.69■□□□□ 0.9
UPF1-212ENST00000601689 HLA-DRAP01903 254 aa20.69■□□□□ 0.9
UPF1-212ENST00000601689 PDGFRBP09619 1106 aa20.69■□□□□ 0.9
UPF1-212ENST00000601689 TRIM49P0CI25 452 aa20.69■□□□□ 0.9
UPF1-212ENST00000601689 TRIM49CP0CI26 452 aa20.69■□□□□ 0.9
UPF1-212ENST00000601689 MYL4P12829 197 aa20.69■□□□□ 0.9
UPF1-212ENST00000601689 MXI1P50539 228 aa20.69■□□□□ 0.9
UPF1-212ENST00000601689 WDR44Q5JSH3 913 aa20.69■□□□□ 0.9
UPF1-212ENST00000601689 EDAQ92838 391 aa20.69■□□□□ 0.9
UPF1-212ENST00000601689 FGF13Q92913 245 aa20.69■□□□□ 0.9
UPF1-212ENST00000601689 EEF2KMTQ96G04 330 aa20.69■□□□□ 0.9
UPF1-212ENST00000601689 TNIP3Q96KP6 325 aa20.69■□□□□ 0.9
UPF1-212ENST00000601689 GZF1Q9H116 711 aaPredicted RBP20.69■□□□□ 0.9
UPF1-212ENST00000601689 EPHX3Q9H6B9 360 aa20.69■□□□□ 0.9
UPF1-212ENST00000601689 GDE1Q9NZC3 331 aa20.69■□□□□ 0.9
UPF1-212ENST00000601689 CTNND2Q9UQB3 1225 aa20.69■□□□□ 0.9
UPF1-212ENST00000601689 HAPLN1P10915 354 aaPredicted RBP20.68■□□□□ 0.9
UPF1-212ENST00000601689 ZXDAP98168 799 aa20.68■□□□□ 0.9
UPF1-212ENST00000601689 TDGQ13569 410 aa20.68■□□□□ 0.9
UPF1-212ENST00000601689 TMEM31Q5JXX7 168 aa20.68■□□□□ 0.9
UPF1-212ENST00000601689 FRMD5Q7Z6J6 570 aa20.68■□□□□ 0.9
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms