RNA–Protein interactions for RNA: ENST00000600310.5

UPF1-209, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 750 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-209ENST00000600310 DLX2Q07687 328 aaPredicted RBP20.68■□□□□ 0.9
UPF1-209ENST00000600310 KREMEN2Q8NCW0 462 aa20.68■□□□□ 0.9
UPF1-209ENST00000600310 FAM200AQ8TCP9 573 aa20.68■□□□□ 0.9
UPF1-209ENST00000600310 HLA-CQ95604 372 aa20.68■□□□□ 0.9
UPF1-209ENST00000600310 NT5C1BQ96P26 610 aa20.68■□□□□ 0.9
UPF1-209ENST00000600310 COL25A1Q9BXS0 654 aaPredicted RBP20.68■□□□□ 0.9
UPF1-209ENST00000600310 TSPY26PQ9H489 355 aa20.68■□□□□ 0.9
UPF1-209ENST00000600310 MAN1C1Q9NR34 630 aa20.68■□□□□ 0.9
UPF1-209ENST00000600310 DZANK1Q9NVP4 752 aa20.68■□□□□ 0.9
UPF1-209ENST00000600310 CLEC1BQ9P126 229 aa20.68■□□□□ 0.9
UPF1-209ENST00000600310 AFF4Q9UHB7 1163 aaKnown RBP20.68■□□□□ 0.9
UPF1-209ENST00000600310 CDH9Q9ULB4 789 aa20.68■□□□□ 0.9
UPF1-209ENST00000600310 MAFFQ9ULX9 164 aa20.68■□□□□ 0.9
UPF1-209ENST00000600310 BARX2Q9UMQ3 279 aaPredicted RBP20.68■□□□□ 0.9
UPF1-209ENST00000600310 COG5Q9UP83 839 aa20.68■□□□□ 0.9
UPF1-209ENST00000600310 TSC2P49815 1807 aa20.67■□□□□ 0.9
UPF1-209ENST00000600310 HCRTO43612 131 aa20.67■□□□□ 0.9
UPF1-209ENST00000600310 SPATA31D3P0C874 917 aa20.67■□□□□ 0.9
UPF1-209ENST00000600310 ATF2P15336 505 aa20.67■□□□□ 0.9
UPF1-209ENST00000600310 ACAT1P24752 427 aaKnown RBP20.67■□□□□ 0.9
UPF1-209ENST00000600310 INTS6LQ5JSJ4 861 aaKnown RBP20.67■□□□□ 0.9
UPF1-209ENST00000600310 ANKRD54Q6NXT1 300 aa20.67■□□□□ 0.9
UPF1-209ENST00000600310 ELMSAN1Q6PJG2 1045 aa20.67■□□□□ 0.9
UPF1-209ENST00000600310 RNF19BQ6ZMZ0 732 aa20.67■□□□□ 0.9
UPF1-209ENST00000600310 GBP6Q6ZN66 633 aa20.67■□□□□ 0.9
UPF1-209ENST00000600310 EP400NLQ6ZTU2 488 aa20.67■□□□□ 0.9
UPF1-209ENST00000600310 SPATA31D4Q6ZUB0 917 aa20.67■□□□□ 0.9
UPF1-209ENST00000600310 LUZP1Q86V48 1076 aa20.67■□□□□ 0.9
UPF1-209ENST00000600310 LRRTM3Q86VH5 581 aa20.67■□□□□ 0.9
UPF1-209ENST00000600310 DCP1BQ8IZD4 617 aaKnown RBP20.67■□□□□ 0.9
UPF1-209ENST00000600310 PKMYT1Q99640 499 aa20.67■□□□□ 0.9
UPF1-209ENST00000600310 INTS2Q9H0H0 1204 aaKnown RBP20.67■□□□□ 0.9
UPF1-209ENST00000600310 GCNT4Q9P109 453 aa20.67■□□□□ 0.9
UPF1-209ENST00000600310 A8MXQ7 604 aa20.66■□□□□ 0.9
UPF1-209ENST00000600310 TPM2P07951 284 aa20.66■□□□□ 0.9
UPF1-209ENST00000600310 PDGFRBP09619 1106 aa20.66■□□□□ 0.9
UPF1-209ENST00000600310 HOXB8P17481 243 aaPredicted RBP20.66■□□□□ 0.9
UPF1-209ENST00000600310 COPB1P53618 953 aaKnown RBP20.66■□□□□ 0.9
UPF1-209ENST00000600310 ADCY1Q08828 1119 aa20.66■□□□□ 0.9
UPF1-209ENST00000600310 INCA1Q0VD86 236 aa20.66■□□□□ 0.9
UPF1-209ENST00000600310 SMARCB1Q12824 385 aa20.66■□□□□ 0.9
UPF1-209ENST00000600310 LRMPQ12912 555 aa20.66■□□□□ 0.9
UPF1-209ENST00000600310 CUL2Q13617 745 aa20.66■□□□□ 0.9
UPF1-209ENST00000600310 EXOC3L4Q17RC7 722 aa20.66■□□□□ 0.9
UPF1-209ENST00000600310 SYCE2Q6PIF2 218 aa20.66■□□□□ 0.9
UPF1-209ENST00000600310 RTL10Q7L3V2 364 aa20.66■□□□□ 0.9
UPF1-209ENST00000600310 UNC93AQ86WB7 457 aa20.66■□□□□ 0.9
UPF1-209ENST00000600310 MSLNLQ96KJ4 702 aa20.66■□□□□ 0.9
UPF1-209ENST00000600310 SYT15Q9BQS2 421 aa20.66■□□□□ 0.9
UPF1-209ENST00000600310 CRACR2AQ9BSW2 395 aa20.66■□□□□ 0.9
UPF1-209ENST00000600310 VPS16Q9H269 839 aa20.66■□□□□ 0.9
UPF1-209ENST00000600310 FAM124BQ9H5Z6 455 aaPredicted RBP20.66■□□□□ 0.9
UPF1-209ENST00000600310 VCANP13611 3396 aa20.66■□□□□ 0.9
UPF1-209ENST00000600310 MTMR11A4FU01 709 aa20.65■□□□□ 0.9
UPF1-209ENST00000600310 VNN2O95498 520 aa20.65■□□□□ 0.9
UPF1-209ENST00000600310 ATP1A3P13637 1013 aa20.65■□□□□ 0.9
UPF1-209ENST00000600310 KCNA5P22460 613 aa20.65■□□□□ 0.9
UPF1-209ENST00000600310 TBXAS1P24557 533 aaPredicted RBP20.65■□□□□ 0.9
UPF1-209ENST00000600310 ELF1P32519 619 aa20.65■□□□□ 0.9
UPF1-209ENST00000600310 UVSSAQ2YD98 709 aa20.65■□□□□ 0.9
UPF1-209ENST00000600310 FAM171BQ6P995 826 aa20.65■□□□□ 0.9
UPF1-209ENST00000600310 APTXQ7Z2E3 356 aaKnown RBP20.65■□□□□ 0.9
UPF1-209ENST00000600310 TTC39CQ8N584 583 aa20.65■□□□□ 0.9
UPF1-209ENST00000600310 PGLYRP2Q96PD5 576 aa20.65■□□□□ 0.9
UPF1-209ENST00000600310 PRDM6Q9NQX0 595 aa20.65■□□□□ 0.9
UPF1-209ENST00000600310 TRANK1O15050 2925 aa20.64■□□□□ 0.9
UPF1-209ENST00000600310 MYBPHLA2RUH7 354 aa20.64■□□□□ 0.89
UPF1-209ENST00000600310 PES1O00541 588 aaKnown RBP20.64■□□□□ 0.89
UPF1-209ENST00000600310 ATP2C2O75185 946 aa20.64■□□□□ 0.89
UPF1-209ENST00000600310 ZMYND10O75800 440 aa20.64■□□□□ 0.89
UPF1-209ENST00000600310 PAPLNO95428 1278 aa20.64■□□□□ 0.89
UPF1-209ENST00000600310 SEC24AO95486 1093 aa20.64■□□□□ 0.89
UPF1-209ENST00000600310 C8AP07357 584 aa20.64■□□□□ 0.89
UPF1-209ENST00000600310 SLC9A1P19634 815 aa20.64■□□□□ 0.89
UPF1-209ENST00000600310 PON1P27169 355 aa20.64■□□□□ 0.89
UPF1-209ENST00000600310 NDST1P52848 882 aa20.64■□□□□ 0.89
UPF1-209ENST00000600310 TPM4P67936 248 aa20.64■□□□□ 0.89
UPF1-209ENST00000600310 NFE2Q16621 373 aaPredicted RBP20.64■□□□□ 0.89
UPF1-209ENST00000600310 SLC39A12Q504Y0 691 aa20.64■□□□□ 0.89
UPF1-209ENST00000600310 LIN9Q5TKA1 542 aa20.64■□□□□ 0.89
UPF1-209ENST00000600310 TRIM65Q6PJ69 517 aa20.64■□□□□ 0.89
UPF1-209ENST00000600310 CCDC149Q6ZUS6 474 aa20.64■□□□□ 0.89
UPF1-209ENST00000600310 TCEAL8Q8IYN2 117 aa20.64■□□□□ 0.89
UPF1-209ENST00000600310 ATAD1Q8NBU5 361 aa20.64■□□□□ 0.89
UPF1-209ENST00000600310 C2orf15Q8WU43 125 aaKnown RBP20.64■□□□□ 0.89
UPF1-209ENST00000600310 ARID3AQ99856 593 aa20.64■□□□□ 0.89
UPF1-209ENST00000600310 SFXN1Q9H9B4 322 aa20.64■□□□□ 0.89
UPF1-209ENST00000600310 CYP4F11Q9HBI6 524 aa20.64■□□□□ 0.89
UPF1-209ENST00000600310 CRTAC1Q9NQ79 661 aa20.64■□□□□ 0.89
UPF1-209ENST00000600310 TMLHEQ9NVH6 421 aa20.64■□□□□ 0.89
UPF1-209ENST00000600310 ZDHHC7Q9NXF8 308 aa20.64■□□□□ 0.89
UPF1-209ENST00000600310 HSFX1Q9UBD0 423 aa20.64■□□□□ 0.89
UPF1-209ENST00000600310 GTF3C4Q9UKN8 822 aa20.64■□□□□ 0.89
UPF1-209ENST00000600310 LGALS16A8MUM7 142 aa20.63■□□□□ 0.89
UPF1-209ENST00000600310 GOLGA6L19H0YKK7 550 aa20.63■□□□□ 0.89
UPF1-209ENST00000600310 CILPO75339 1184 aa20.63■□□□□ 0.89
UPF1-209ENST00000600310 PTPN1P18031 435 aaKnown RBP20.63■□□□□ 0.89
UPF1-209ENST00000600310 HOXA9P31269 272 aa20.63■□□□□ 0.89
UPF1-209ENST00000600310 PSMC1P62191 440 aaKnown RBP20.63■□□□□ 0.89
UPF1-209ENST00000600310 GCNT1Q02742 428 aa20.63■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms