RNA–Protein interactions for RNA: ENST00000599716.5

SHKBP1-220, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 572 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-220ENST00000599716 CACNA2D2Q9NY47 1150 aa9.39□□□□□ -0.91
SHKBP1-220ENST00000599716 CCL26Q9Y258 94 aa9.39□□□□□ -0.91
SHKBP1-220ENST00000599716 RBM19Q9Y4C8 960 aaKnown RBP9.39□□□□□ -0.91
SHKBP1-220ENST00000599716 EML5Q05BV3 1969 aa9.39□□□□□ -0.91
SHKBP1-220ENST00000599716 UBR5O95071 2799 aaPredicted RBP9.38□□□□□ -0.91
SHKBP1-220ENST00000599716 MYBPHLA2RUH7 354 aa9.38□□□□□ -0.91
SHKBP1-220ENST00000599716 ANTXRLA6NF34 631 aa9.38□□□□□ -0.91
SHKBP1-220ENST00000599716 ANKRD63C9JTQ0 380 aa9.38□□□□□ -0.91
SHKBP1-220ENST00000599716 DPYSL4O14531 572 aa9.38□□□□□ -0.91
SHKBP1-220ENST00000599716 TM4SF5O14894 197 aa9.38□□□□□ -0.91
SHKBP1-220ENST00000599716 CHADO15335 359 aa9.38□□□□□ -0.91
SHKBP1-220ENST00000599716 FAM189A1O60320 539 aa9.38□□□□□ -0.91
SHKBP1-220ENST00000599716 CLTAP09496 248 aa9.38□□□□□ -0.91
SHKBP1-220ENST00000599716 GUCY2CP25092 1073 aa9.38□□□□□ -0.91
SHKBP1-220ENST00000599716 LRPAP1P30533 357 aa9.38□□□□□ -0.91
SHKBP1-220ENST00000599716 ALDH1A3P47895 512 aa9.38□□□□□ -0.91
SHKBP1-220ENST00000599716 TRAPPC10P48553 1259 aa9.38□□□□□ -0.91
SHKBP1-220ENST00000599716 AARSP49588 968 aaKnown RBP eCLIP9.38□□□□□ -0.91
SHKBP1-220ENST00000599716 NRLP54845 237 aa9.38□□□□□ -0.91
SHKBP1-220ENST00000599716 SLC12A3P55017 1021 aa9.38□□□□□ -0.91
SHKBP1-220ENST00000599716 GRIN1Q05586 938 aa9.38□□□□□ -0.91
SHKBP1-220ENST00000599716 PPP2R3AQ06190 1150 aa9.38□□□□□ -0.91
SHKBP1-220ENST00000599716 FCHO2Q0JRZ9 810 aa9.38□□□□□ -0.91
SHKBP1-220ENST00000599716 GPR17Q13304 367 aa9.38□□□□□ -0.91
SHKBP1-220ENST00000599716 CCDC142Q17RM4 750 aa9.38□□□□□ -0.91
SHKBP1-220ENST00000599716 SLC39A12Q504Y0 691 aa9.38□□□□□ -0.91
SHKBP1-220ENST00000599716 TCEAL6Q6IPX3 200 aa9.38□□□□□ -0.91
SHKBP1-220ENST00000599716 ZPBP2Q6X784 338 aa9.38□□□□□ -0.91
SHKBP1-220ENST00000599716 HAUS6Q7Z4H7 955 aa9.38□□□□□ -0.91
SHKBP1-220ENST00000599716 PDZD3Q86UT5 571 aa9.38□□□□□ -0.91
SHKBP1-220ENST00000599716 LRRTM3Q86VH5 581 aa9.38□□□□□ -0.91
SHKBP1-220ENST00000599716 SYT2Q8N9I0 419 aaPredicted RBP9.38□□□□□ -0.91
SHKBP1-220ENST00000599716 SPIRE2Q8WWL2 714 aa9.38□□□□□ -0.91
SHKBP1-220ENST00000599716 TCEAL3Q969E4 200 aa9.38□□□□□ -0.91
SHKBP1-220ENST00000599716 KIF2CQ99661 725 aa9.38□□□□□ -0.91
SHKBP1-220ENST00000599716 REEP2Q9BRK0 252 aa9.38□□□□□ -0.91
SHKBP1-220ENST00000599716 ARRDC1-AS1Q9H2J1 176 aa9.38□□□□□ -0.91
SHKBP1-220ENST00000599716 ZHX3Q9H4I2 956 aa9.38□□□□□ -0.91
SHKBP1-220ENST00000599716 IL21Q9HBE4 155 aa9.38□□□□□ -0.91
SHKBP1-220ENST00000599716 FBRSL1Q9HCM7 1045 aaKnown RBP9.38□□□□□ -0.91
SHKBP1-220ENST00000599716 UBQLN1Q9UMX0 589 aaKnown RBP9.38□□□□□ -0.91
SHKBP1-220ENST00000599716 TCHHQ07283 1943 aa9.38□□□□□ -0.91
SHKBP1-220ENST00000599716 ZNF638Q14966 1978 aaKnown RBP9.37□□□□□ -0.91
SHKBP1-220ENST00000599716 K7ENM7 598 aa9.37□□□□□ -0.91
SHKBP1-220ENST00000599716 HNRNPDLO14979 420 aaKnown RBP9.37□□□□□ -0.91
SHKBP1-220ENST00000599716 ARSAP15289 507 aa9.37□□□□□ -0.91
SHKBP1-220ENST00000599716 ACOT2P49753 483 aa9.37□□□□□ -0.91
SHKBP1-220ENST00000599716 LIG4P49917 911 aa9.37□□□□□ -0.91
SHKBP1-220ENST00000599716 SMTNP53814 917 aa9.37□□□□□ -0.91
SHKBP1-220ENST00000599716 NCKAP1LP55160 1127 aa9.37□□□□□ -0.91
SHKBP1-220ENST00000599716 LILRA4P59901 499 aa9.37□□□□□ -0.91
SHKBP1-220ENST00000599716 CCINQ13939 588 aa9.37□□□□□ -0.91
SHKBP1-220ENST00000599716 LRRC32Q14392 662 aa9.37□□□□□ -0.91
SHKBP1-220ENST00000599716 PPP2R5DQ14738 602 aa9.37□□□□□ -0.91
SHKBP1-220ENST00000599716 MGAT5BQ3V5L5 792 aa9.37□□□□□ -0.91
SHKBP1-220ENST00000599716 ZC2HC1CQ53FD0 456 aaPredicted RBP9.37□□□□□ -0.91
SHKBP1-220ENST00000599716 C9orf57Q5W0N0 161 aa9.37□□□□□ -0.91
SHKBP1-220ENST00000599716 KBTBD6Q86V97 674 aa9.37□□□□□ -0.91
SHKBP1-220ENST00000599716 LONP2Q86WA8 852 aa9.37□□□□□ -0.91
SHKBP1-220ENST00000599716 LEMD2Q8NC56 503 aa9.37□□□□□ -0.91
SHKBP1-220ENST00000599716 PSMG2Q969U7 264 aa9.37□□□□□ -0.91
SHKBP1-220ENST00000599716 LLPHQ9BRT6 129 aaKnown RBP9.37□□□□□ -0.91
SHKBP1-220ENST00000599716 NTPCRQ9BSD7 190 aaKnown RBP9.37□□□□□ -0.91
SHKBP1-220ENST00000599716 SLC46A2Q9BY10 475 aa9.37□□□□□ -0.91
SHKBP1-220ENST00000599716 RAB34Q9BZG1 259 aa9.37□□□□□ -0.91
SHKBP1-220ENST00000599716 EBF3Q9H4W6 596 aa9.37□□□□□ -0.91
SHKBP1-220ENST00000599716 RPF1Q9H9Y2 349 aaKnown RBP9.37□□□□□ -0.91
SHKBP1-220ENST00000599716 HPS4Q9NQG7 708 aa9.37□□□□□ -0.91
SHKBP1-220ENST00000599716 GKN1Q9NS71 199 aa9.37□□□□□ -0.91
SHKBP1-220ENST00000599716 TMLHEQ9NVH6 421 aa9.37□□□□□ -0.91
SHKBP1-220ENST00000599716 ABI2Q9NYB9 513 aaPredicted RBP9.37□□□□□ -0.91
SHKBP1-220ENST00000599716 WASF3Q9UPY6 502 aa9.37□□□□□ -0.91
SHKBP1-220ENST00000599716 GREB1Q4ZG55 1949 aa9.37□□□□□ -0.91
SHKBP1-220ENST00000599716 OBSL1O75147 1896 aa9.36□□□□□ -0.91
SHKBP1-220ENST00000599716 OR6C75A6NL08 312 aa9.36□□□□□ -0.91
SHKBP1-220ENST00000599716 DCLK1O15075 740 aa9.36□□□□□ -0.91
SHKBP1-220ENST00000599716 OGTO15294 1046 aa9.36□□□□□ -0.91
SHKBP1-220ENST00000599716 HCRTO43612 131 aa9.36□□□□□ -0.91
SHKBP1-220ENST00000599716 KCNK5O95279 499 aa9.36□□□□□ -0.91
SHKBP1-220ENST00000599716 EGFP01133 1207 aa9.36□□□□□ -0.91
SHKBP1-220ENST00000599716 ODC1P11926 461 aa9.36□□□□□ -0.91
SHKBP1-220ENST00000599716 CD44P16070 742 aaKnown RBP9.36□□□□□ -0.91
SHKBP1-220ENST00000599716 CLCN6P51797 869 aa9.36□□□□□ -0.91
SHKBP1-220ENST00000599716 WNT7BP56706 349 aa9.36□□□□□ -0.91
SHKBP1-220ENST00000599716 HMGN5P82970 282 aaKnown RBP9.36□□□□□ -0.91
SHKBP1-220ENST00000599716 MCM6Q14566 821 aa9.36□□□□□ -0.91
SHKBP1-220ENST00000599716 AASDHQ4L235 1098 aaPredicted RBP9.36□□□□□ -0.91
SHKBP1-220ENST00000599716 TMEM119Q4V9L6 283 aa9.36□□□□□ -0.91
SHKBP1-220ENST00000599716 SPATA1Q5VX52 437 aa9.36□□□□□ -0.91
SHKBP1-220ENST00000599716 WSCD1Q658N2 575 aa9.36□□□□□ -0.91
SHKBP1-220ENST00000599716 FSTL4Q6MZW2 842 aa9.36□□□□□ -0.91
SHKBP1-220ENST00000599716 ARMCX5Q6P1M9 558 aa9.36□□□□□ -0.91
SHKBP1-220ENST00000599716 MAMSTRQ6ZN01 415 aa9.36□□□□□ -0.91
SHKBP1-220ENST00000599716 TMEM150AQ86TG1 271 aa9.36□□□□□ -0.91
SHKBP1-220ENST00000599716 GPBP1Q86WP2 473 aa9.36□□□□□ -0.91
SHKBP1-220ENST00000599716 RALGPS2Q86X27 583 aaPredicted RBP9.36□□□□□ -0.91
SHKBP1-220ENST00000599716 MYCT1Q8N699 235 aa9.36□□□□□ -0.91
SHKBP1-220ENST00000599716 MAB21L3Q8N8X9 362 aa9.36□□□□□ -0.91
SHKBP1-220ENST00000599716 GLIS3Q8NEA6 775 aa9.36□□□□□ -0.91
SHKBP1-220ENST00000599716 ZSWIM2Q8NEG5 633 aa9.36□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms