RNA–Protein interactions for RNA: ENST00000599575.5

SHKBP1-219, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 810 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-219ENST00000599575 LIN9Q5TKA1 542 aa17.69■□□□□ 0.42
SHKBP1-219ENST00000599575 TRIM65Q6PJ69 517 aa17.69■□□□□ 0.42
SHKBP1-219ENST00000599575 RSPO2Q6UXX9 243 aaPredicted RBP17.69■□□□□ 0.42
SHKBP1-219ENST00000599575 CMASQ8NFW8 434 aaPredicted RBP17.69■□□□□ 0.42
SHKBP1-219ENST00000599575 OR6B3Q8NGW1 331 aa17.69■□□□□ 0.42
SHKBP1-219ENST00000599575 SPPL2BQ8TCT7 592 aa17.69■□□□□ 0.42
SHKBP1-219ENST00000599575 HLA-CQ95604 372 aa17.69■□□□□ 0.42
SHKBP1-219ENST00000599575 FUBP3Q96I24 572 aaKnown RBP eCLIP17.69■□□□□ 0.42
SHKBP1-219ENST00000599575 RTP3Q9BQQ7 232 aa17.69■□□□□ 0.42
SHKBP1-219ENST00000599575 INTS2Q9H0H0 1204 aaKnown RBP17.69■□□□□ 0.42
SHKBP1-219ENST00000599575 IGFLR1Q9H665 355 aa17.69■□□□□ 0.42
SHKBP1-219ENST00000599575 ABCB6Q9NP58 842 aa17.69■□□□□ 0.42
SHKBP1-219ENST00000599575 ZDHHC7Q9NXF8 308 aa17.69■□□□□ 0.42
SHKBP1-219ENST00000599575 FBXW11Q9UKB1 542 aa17.69■□□□□ 0.42
SHKBP1-219ENST00000599575 WDR27A2RRH5 827 aa17.68■□□□□ 0.42
SHKBP1-219ENST00000599575 LGALS16A8MUM7 142 aa17.68■□□□□ 0.42
SHKBP1-219ENST00000599575 A8MXQ7 604 aa17.68■□□□□ 0.42
SHKBP1-219ENST00000599575 PES1O00541 588 aaKnown RBP17.68■□□□□ 0.42
SHKBP1-219ENST00000599575 HNRNPA1P09651 372 aaKnown RBP eCLIP17.68■□□□□ 0.42
SHKBP1-219ENST00000599575 COPB1P53618 953 aaKnown RBP17.68■□□□□ 0.42
SHKBP1-219ENST00000599575 SPOPLQ6IQ16 392 aa17.68■□□□□ 0.42
SHKBP1-219ENST00000599575 FAM171BQ6P995 826 aa17.68■□□□□ 0.42
SHKBP1-219ENST00000599575 C4orf50Q6ZRC1 276 aa17.68■□□□□ 0.42
SHKBP1-219ENST00000599575 PALB2Q86YC2 1186 aa17.68■□□□□ 0.42
SHKBP1-219ENST00000599575 CRYBG2Q8N1P7 616 aa17.68■□□□□ 0.42
SHKBP1-219ENST00000599575 KREMEN2Q8NCW0 462 aa17.68■□□□□ 0.42
SHKBP1-219ENST00000599575 OR10T2Q8NGX3 314 aa17.68■□□□□ 0.42
SHKBP1-219ENST00000599575 MRPL45Q9BRJ2 306 aaKnown RBP17.68■□□□□ 0.42
SHKBP1-219ENST00000599575 SMYD3Q9H7B4 428 aa17.68■□□□□ 0.42
SHKBP1-219ENST00000599575 SFXN1Q9H9B4 322 aa17.68■□□□□ 0.42
SHKBP1-219ENST00000599575 CLDND1Q9NY35 253 aa17.68■□□□□ 0.42
SHKBP1-219ENST00000599575 APEX2Q9UBZ4 518 aa17.68■□□□□ 0.42
SHKBP1-219ENST00000599575 POLIQ9UNA4 740 aa17.68■□□□□ 0.42
SHKBP1-219ENST00000599575 ADAM12O43184 909 aa17.67■□□□□ 0.42
SHKBP1-219ENST00000599575 TUFMP49411 452 aaKnown RBP17.67■□□□□ 0.42
SHKBP1-219ENST00000599575 ITIH3Q06033 890 aa17.67■□□□□ 0.42
SHKBP1-219ENST00000599575 SKIV2LQ15477 1246 aaKnown RBP17.67■□□□□ 0.42
SHKBP1-219ENST00000599575 CCDC85BQ15834 202 aaPredicted RBP17.67■□□□□ 0.42
SHKBP1-219ENST00000599575 AAK1Q2M2I8 961 aa17.67■□□□□ 0.42
SHKBP1-219ENST00000599575 PUS10Q3MIT2 529 aaKnown RBP17.67■□□□□ 0.42
SHKBP1-219ENST00000599575 CFAP221Q4G0U5 840 aa17.67■□□□□ 0.42
SHKBP1-219ENST00000599575 APTXQ7Z2E3 356 aaKnown RBP17.67■□□□□ 0.42
SHKBP1-219ENST00000599575 LUZP1Q86V48 1076 aa17.67■□□□□ 0.42
SHKBP1-219ENST00000599575 PPM1KQ8N3J5 372 aa17.67■□□□□ 0.42
SHKBP1-219ENST00000599575 MYCBPAPQ8TBZ2 947 aa17.67■□□□□ 0.42
SHKBP1-219ENST00000599575 CEP295NLQ96MC4 621 aa17.67■□□□□ 0.42
SHKBP1-219ENST00000599575 SYT15Q9BQS2 421 aa17.67■□□□□ 0.42
SHKBP1-219ENST00000599575 NT5C1AQ9BXI3 368 aa17.67■□□□□ 0.42
SHKBP1-219ENST00000599575 VPS16Q9H269 839 aa17.67■□□□□ 0.42
SHKBP1-219ENST00000599575 UBE2ZQ9H832 354 aaPredicted RBP17.67■□□□□ 0.42
SHKBP1-219ENST00000599575 PLCB1Q9NQ66 1216 aa17.67■□□□□ 0.42
SHKBP1-219ENST00000599575 TAB2Q9NYJ8 693 aa17.67■□□□□ 0.42
SHKBP1-219ENST00000599575 KIAA1257Q9ULG3 409 aa17.67■□□□□ 0.42
SHKBP1-219ENST00000599575 CILPO75339 1184 aa17.66■□□□□ 0.42
SHKBP1-219ENST00000599575 ZMYND10O75800 440 aa17.66■□□□□ 0.42
SHKBP1-219ENST00000599575 GLP2RO95838 553 aa17.66■□□□□ 0.42
SHKBP1-219ENST00000599575 WEE2P0C1S8 567 aa17.66■□□□□ 0.42
SHKBP1-219ENST00000599575 EPCAMP16422 314 aa17.66■□□□□ 0.42
SHKBP1-219ENST00000599575 LMO2P25791 158 aa17.66■□□□□ 0.42
SHKBP1-219ENST00000599575 PON1P27169 355 aa17.66■□□□□ 0.42
SHKBP1-219ENST00000599575 GTF2F1P35269 517 aaKnown RBP eCLIP17.66■□□□□ 0.42
SHKBP1-219ENST00000599575 MFAP3P55082 362 aa17.66■□□□□ 0.42
SHKBP1-219ENST00000599575 CDH8P55286 799 aa17.66■□□□□ 0.42
SHKBP1-219ENST00000599575 ARPP19P56211 112 aa17.66■□□□□ 0.42
SHKBP1-219ENST00000599575 PLD1Q13393 1074 aa17.66■□□□□ 0.42
SHKBP1-219ENST00000599575 SLC39A12Q504Y0 691 aa17.66■□□□□ 0.42
SHKBP1-219ENST00000599575 ANKRD54Q6NXT1 300 aa17.66■□□□□ 0.42
SHKBP1-219ENST00000599575 SCARA5Q6ZMJ2 495 aa17.66■□□□□ 0.42
SHKBP1-219ENST00000599575 OSTM1Q86WC4 334 aa17.66■□□□□ 0.42
SHKBP1-219ENST00000599575 GLYCTKQ8IVS8 523 aa17.66■□□□□ 0.42
SHKBP1-219ENST00000599575 B3GALNT2Q8NCR0 500 aa17.66■□□□□ 0.42
SHKBP1-219ENST00000599575 TATDN2Q93075 761 aa17.66■□□□□ 0.42
SHKBP1-219ENST00000599575 PKMYT1Q99640 499 aa17.66■□□□□ 0.42
SHKBP1-219ENST00000599575 MAN1C1Q9NR34 630 aa17.66■□□□□ 0.42
SHKBP1-219ENST00000599575 CISHQ9NSE2 258 aa17.66■□□□□ 0.42
SHKBP1-219ENST00000599575 PCDHB5Q9Y5E4 795 aa17.66■□□□□ 0.42
SHKBP1-219ENST00000599575 VWA8A3KMH1 1905 aa17.66■□□□□ 0.42
SHKBP1-219ENST00000599575 MTMR11A4FU01 709 aa17.65■□□□□ 0.42
SHKBP1-219ENST00000599575 PRRG1O14668 218 aa17.65■□□□□ 0.42
SHKBP1-219ENST00000599575 LRRN2O75325 713 aa17.65■□□□□ 0.42
SHKBP1-219ENST00000599575 ATP1A3P13637 1013 aa17.65■□□□□ 0.42
SHKBP1-219ENST00000599575 PTPN1P18031 435 aaKnown RBP17.65■□□□□ 0.42
SHKBP1-219ENST00000599575 LTBRP36941 435 aa17.65■□□□□ 0.42
SHKBP1-219ENST00000599575 MAGEA11P43364 429 aa17.65■□□□□ 0.42
SHKBP1-219ENST00000599575 NDST1P52848 882 aa17.65■□□□□ 0.42
SHKBP1-219ENST00000599575 ADCY1Q08828 1119 aa17.65■□□□□ 0.42
SHKBP1-219ENST00000599575 VSTM1Q6UX27 236 aa17.65■□□□□ 0.42
SHKBP1-219ENST00000599575 RNF19BQ6ZMZ0 732 aa17.65■□□□□ 0.42
SHKBP1-219ENST00000599575 VN1R2Q8NFZ6 395 aa17.65■□□□□ 0.42
SHKBP1-219ENST00000599575 MSLNLQ96KJ4 702 aa17.65■□□□□ 0.42
SHKBP1-219ENST00000599575 ERGIC2Q96RQ1 377 aa17.65■□□□□ 0.42
SHKBP1-219ENST00000599575 CRACR2AQ9BSW2 395 aa17.65■□□□□ 0.42
SHKBP1-219ENST00000599575 SDCBP2Q9H190 292 aa17.65■□□□□ 0.42
SHKBP1-219ENST00000599575 CLEC1BQ9P126 229 aa17.65■□□□□ 0.42
SHKBP1-219ENST00000599575 FAM50BQ9Y247 325 aa17.65■□□□□ 0.42
SHKBP1-219ENST00000599575 A0A1B0GTH6 734 aa17.64■□□□□ 0.41
SHKBP1-219ENST00000599575 SPDYE4A6NLX3 237 aa17.64■□□□□ 0.41
SHKBP1-219ENST00000599575 XYLBO75191 536 aa17.64■□□□□ 0.41
SHKBP1-219ENST00000599575 SERPINC1P01008 464 aa17.64■□□□□ 0.41
SHKBP1-219ENST00000599575 TPM3P06753 285 aa17.64■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 90.6 ms