RNA–Protein interactions for RNA: ENST00000599543.3

PNKP-213, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 3

Gene PNKP, Length 986 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-213ENST00000599543 DENND4CQ5VZ89 1909 aa20.19■□□□□ 0.82
PNKP-213ENST00000599543 DNAH14Q0VDD8 3507 aa20.19■□□□□ 0.82
PNKP-213ENST00000599543 FRMD3A2A2Y4 597 aa20.19■□□□□ 0.82
PNKP-213ENST00000599543 KINO60870 393 aaKnown RBP20.19■□□□□ 0.82
PNKP-213ENST00000599543 GARTP22102 1010 aa20.19■□□□□ 0.82
PNKP-213ENST00000599543 GABRR2P28476 465 aa20.19■□□□□ 0.82
PNKP-213ENST00000599543 CDR1P51861 262 aa20.19■□□□□ 0.82
PNKP-213ENST00000599543 ATL3Q6DD88 541 aa20.19■□□□□ 0.82
PNKP-213ENST00000599543 GAREM2Q75VX8 874 aa20.19■□□□□ 0.82
PNKP-213ENST00000599543 NOC3LQ8WTT2 800 aaKnown RBP20.19■□□□□ 0.82
PNKP-213ENST00000599543 GCNAQ96QF7 691 aa20.19■□□□□ 0.82
PNKP-213ENST00000599543 LPIN3Q9BQK8 851 aa20.19■□□□□ 0.82
PNKP-213ENST00000599543 NCANO14594 1321 aa20.19■□□□□ 0.82
PNKP-213ENST00000599543 SHISA7A6NL88 538 aa20.18■□□□□ 0.82
PNKP-213ENST00000599543 DPYSL4O14531 572 aa20.18■□□□□ 0.82
PNKP-213ENST00000599543 POLR2BP30876 1174 aaKnown RBP20.18■□□□□ 0.82
PNKP-213ENST00000599543 TAF12Q16514 161 aa20.18■□□□□ 0.82
PNKP-213ENST00000599543 ARID3BQ8IVW6 561 aaPredicted RBP20.18■□□□□ 0.82
PNKP-213ENST00000599543 CCDC65Q8IXS2 484 aa20.18■□□□□ 0.82
PNKP-213ENST00000599543 SPPL2BQ8TCT7 592 aa20.18■□□□□ 0.82
PNKP-213ENST00000599543 CSGALNACT1Q8TDX6 532 aa20.18■□□□□ 0.82
PNKP-213ENST00000599543 CACTINQ8WUQ7 758 aaKnown RBP20.18■□□□□ 0.82
PNKP-213ENST00000599543 FAM3CQ92520 227 aa20.18■□□□□ 0.82
PNKP-213ENST00000599543 TMEM206Q9H813 350 aa20.18■□□□□ 0.82
PNKP-213ENST00000599543 ABI2Q9NYB9 513 aaPredicted RBP20.18■□□□□ 0.82
PNKP-213ENST00000599543 PCDHGA2Q9Y5H1 932 aa20.18■□□□□ 0.82
PNKP-213ENST00000599543 GPR179Q6PRD1 2367 aa20.17■□□□□ 0.82
PNKP-213ENST00000599543 ITGB3P05106 788 aa20.17■□□□□ 0.82
PNKP-213ENST00000599543 ATF6P18850 670 aa20.17■□□□□ 0.82
PNKP-213ENST00000599543 TSPY1Q01534 308 aa20.17■□□□□ 0.82
PNKP-213ENST00000599543 FCHO2Q0JRZ9 810 aa20.17■□□□□ 0.82
PNKP-213ENST00000599543 FZD5Q13467 585 aa20.17■□□□□ 0.82
PNKP-213ENST00000599543 GPR158Q5T848 1215 aa20.17■□□□□ 0.82
PNKP-213ENST00000599543 STXBP4Q6ZWJ1 553 aa20.17■□□□□ 0.82
PNKP-213ENST00000599543 DCP1BQ8IZD4 617 aaKnown RBP20.17■□□□□ 0.82
PNKP-213ENST00000599543 ZSWIM2Q8NEG5 633 aa20.17■□□□□ 0.82
PNKP-213ENST00000599543 ATRIPQ8WXE1 791 aa20.17■□□□□ 0.82
PNKP-213ENST00000599543 RSPRY1Q96DX4 576 aa20.17■□□□□ 0.82
PNKP-213ENST00000599543 CBWD1Q9BRT8 395 aa20.17■□□□□ 0.82
PNKP-213ENST00000599543 FGFBP2Q9BYJ0 223 aa20.17■□□□□ 0.82
PNKP-213ENST00000599543 ATP6V1DQ9Y5K8 247 aa20.17■□□□□ 0.82
PNKP-213ENST00000599543 OBSL1O75147 1896 aa20.17■□□□□ 0.82
PNKP-213ENST00000599543 KIF26AQ9ULI4 1882 aaPredicted RBP20.16■□□□□ 0.82
PNKP-213ENST00000599543 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP20.16■□□□□ 0.82
PNKP-213ENST00000599543 GOLGA8IPA6NC78 632 aa20.16■□□□□ 0.82
PNKP-213ENST00000599543 GOLGA8JA6NMD2 632 aa20.16■□□□□ 0.82
PNKP-213ENST00000599543 ARNTLO00327 626 aa20.16■□□□□ 0.82
PNKP-213ENST00000599543 CHADO15335 359 aa20.16■□□□□ 0.82
PNKP-213ENST00000599543 EXTL3O43909 919 aa20.16■□□□□ 0.82
PNKP-213ENST00000599543 PRPF6O94906 941 aaKnown RBP20.16■□□□□ 0.82
PNKP-213ENST00000599543 CDC25CP30307 473 aa20.16■□□□□ 0.82
PNKP-213ENST00000599543 WNT7BP56706 349 aa20.16■□□□□ 0.82
PNKP-213ENST00000599543 MTAPQ13126 283 aa20.16■□□□□ 0.82
PNKP-213ENST00000599543 C1orf228Q6PIY5 440 aa20.16■□□□□ 0.82
PNKP-213ENST00000599543 LRRTM3Q86VH5 581 aa20.16■□□□□ 0.82
PNKP-213ENST00000599543 C1orf127Q8N9H9 656 aa20.16■□□□□ 0.82
PNKP-213ENST00000599543 DHX58Q96C10 678 aa20.16■□□□□ 0.82
PNKP-213ENST00000599543 BORCS6Q96GS4 357 aa20.16■□□□□ 0.82
PNKP-213ENST00000599543 MKNK1Q9BUB5 465 aa20.16■□□□□ 0.82
PNKP-213ENST00000599543 LRRC27Q9C0I9 530 aa20.16■□□□□ 0.82
PNKP-213ENST00000599543 TNMDQ9H2S6 317 aa20.16■□□□□ 0.82
PNKP-213ENST00000599543 PCIF1Q9H4Z3 704 aa20.16■□□□□ 0.82
PNKP-213ENST00000599543 PRMT8Q9NR22 394 aaPredicted RBP20.16■□□□□ 0.82
PNKP-213ENST00000599543 ITGA11Q9UKX5 1188 aa20.16■□□□□ 0.82
PNKP-213ENST00000599543 AGAP1Q9UPQ3 857 aa20.16■□□□□ 0.82
PNKP-213ENST00000599543 HUS1O60921 280 aa20.15■□□□□ 0.82
PNKP-213ENST00000599543 KRT19P08727 400 aa20.15■□□□□ 0.82
PNKP-213ENST00000599543 HAPLN1P10915 354 aaPredicted RBP20.15■□□□□ 0.82
PNKP-213ENST00000599543 CCNE1P24864 410 aa20.15■□□□□ 0.82
PNKP-213ENST00000599543 KPNA1P52294 538 aaPredicted RBP20.15■□□□□ 0.82
PNKP-213ENST00000599543 CYP4F8P98187 520 aa20.15■□□□□ 0.82
PNKP-213ENST00000599543 BFSP1Q12934 665 aa20.15■□□□□ 0.82
PNKP-213ENST00000599543 RESP18Q5W5W9 173 aa20.15■□□□□ 0.82
PNKP-213ENST00000599543 GPIHBP1Q8IV16 184 aa20.15■□□□□ 0.82
PNKP-213ENST00000599543 ZNF687Q8N1G0 1237 aa20.15■□□□□ 0.82
PNKP-213ENST00000599543 PDCL2Q8N4E4 241 aa20.15■□□□□ 0.82
PNKP-213ENST00000599543 CSGALNACT2Q8N6G5 542 aa20.15■□□□□ 0.82
PNKP-213ENST00000599543 LRRC52Q8N7C0 313 aa20.15■□□□□ 0.82
PNKP-213ENST00000599543 GIPC2Q8TF65 315 aa20.15■□□□□ 0.82
PNKP-213ENST00000599543 RUBCNQ92622 972 aa20.15■□□□□ 0.82
PNKP-213ENST00000599543 MSANTD3Q96H12 275 aa20.15■□□□□ 0.82
PNKP-213ENST00000599543 IER2Q9BTL4 223 aa20.15■□□□□ 0.82
PNKP-213ENST00000599543 CHRDQ9H2X0 955 aa20.15■□□□□ 0.82
PNKP-213ENST00000599543 ZSCAN32Q9NX65 697 aa20.15■□□□□ 0.82
PNKP-213ENST00000599543 PCDHB5Q9Y5E4 795 aa20.15■□□□□ 0.82
PNKP-213ENST00000599543 CEP250Q9BV73 2442 aa20.15■□□□□ 0.82
PNKP-213ENST00000599543 SLC38A8A6NNN8 435 aa20.14■□□□□ 0.81
PNKP-213ENST00000599543 TMEM191BP0C7N4 346 aa20.14■□□□□ 0.81
PNKP-213ENST00000599543 MLLT6P55198 1093 aaPredicted RBP20.14■□□□□ 0.81
PNKP-213ENST00000599543 PPP2R5DQ14738 602 aa20.14■□□□□ 0.81
PNKP-213ENST00000599543 NFE2Q16621 373 aaPredicted RBP20.14■□□□□ 0.81
PNKP-213ENST00000599543 ARHGAP29Q52LW3 1261 aa20.14■□□□□ 0.81
PNKP-213ENST00000599543 TSSK4Q6SA08 328 aa20.14■□□□□ 0.81
PNKP-213ENST00000599543 GPD1LQ8N335 351 aa20.14■□□□□ 0.81
PNKP-213ENST00000599543 MTMR12Q9C0I1 747 aa20.14■□□□□ 0.81
PNKP-213ENST00000599543 CUEDC2Q9H467 287 aa20.14■□□□□ 0.81
PNKP-213ENST00000599543 TASP1Q9H6P5 420 aa20.14■□□□□ 0.81
PNKP-213ENST00000599543 C8orf33Q9H7E9 229 aaPredicted RBP20.14■□□□□ 0.81
PNKP-213ENST00000599543 LMAN1LQ9HAT1 526 aa20.14■□□□□ 0.81
PNKP-213ENST00000599543 PDE11AQ9HCR9 933 aa20.14■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms