RNA–Protein interactions for RNA: ENST00000598938.1

LIG1-216, Transcript of DNA ligase 1, humanhuman

TSL 3

Gene LIG1, Length 377 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-216ENST00000598938 CTXN3Q4LDR2 81 aa19.48■□□□□ 0.71
LIG1-216ENST00000598938 TCP11X2Q5H9J9 407 aa19.48■□□□□ 0.71
LIG1-216ENST00000598938 ZNF667Q5HYK9 610 aa19.48■□□□□ 0.71
LIG1-216ENST00000598938 PPFIBP1Q86W92 1011 aa19.48■□□□□ 0.71
LIG1-216ENST00000598938 CREBRFQ8IUR6 639 aa19.48■□□□□ 0.71
LIG1-216ENST00000598938 DHX40Q8IX18 779 aaKnown RBP19.48■□□□□ 0.71
LIG1-216ENST00000598938 SLC22A17Q8WUG5 538 aa19.48■□□□□ 0.71
LIG1-216ENST00000598938 ELMO3Q96BJ8 720 aa19.48■□□□□ 0.71
LIG1-216ENST00000598938 RTP3Q9BQQ7 232 aa19.48■□□□□ 0.71
LIG1-216ENST00000598938 PI4K2AQ9BTU6 479 aa19.48■□□□□ 0.71
LIG1-216ENST00000598938 IMPG2Q9BZV3 1241 aa19.48■□□□□ 0.71
LIG1-216ENST00000598938 HSD3B7Q9H2F3 369 aa19.48■□□□□ 0.71
LIG1-216ENST00000598938 APOBEC3GQ9HC16 384 aaKnown RBP19.48■□□□□ 0.71
LIG1-216ENST00000598938 POLIQ9UNA4 740 aa19.48■□□□□ 0.71
LIG1-216ENST00000598938 CDY1Q9Y6F8 540 aa19.48■□□□□ 0.71
LIG1-216ENST00000598938 OR6C75A6NL08 312 aa19.47■□□□□ 0.71
LIG1-216ENST00000598938 GABRDO14764 452 aa19.47■□□□□ 0.71
LIG1-216ENST00000598938 TACC1O75410 805 aa19.47■□□□□ 0.71
LIG1-216ENST00000598938 CAVIN2O95810 425 aa19.47■□□□□ 0.71
LIG1-216ENST00000598938 GLP2RO95838 553 aa19.47■□□□□ 0.71
LIG1-216ENST00000598938 ZNF18P17022 549 aa19.47■□□□□ 0.71
LIG1-216ENST00000598938 OR1D2P34982 312 aa19.47■□□□□ 0.71
LIG1-216ENST00000598938 NOP14P78316 857 aaKnown RBP19.47■□□□□ 0.71
LIG1-216ENST00000598938 RAB33AQ14088 237 aa19.47■□□□□ 0.71
LIG1-216ENST00000598938 SPOPLQ6IQ16 392 aa19.47■□□□□ 0.71
LIG1-216ENST00000598938 ADGRF2Q8IZF7 708 aa19.47■□□□□ 0.71
LIG1-216ENST00000598938 VN1R2Q8NFZ6 395 aa19.47■□□□□ 0.71
LIG1-216ENST00000598938 KBTBD7Q8WVZ9 684 aa19.47■□□□□ 0.71
LIG1-216ENST00000598938 MMS19Q96T76 1030 aa19.47■□□□□ 0.71
LIG1-216ENST00000598938 TUBGCP2Q9BSJ2 902 aa19.47■□□□□ 0.71
LIG1-216ENST00000598938 NXF1Q9UBU9 619 aaKnown RBP19.47■□□□□ 0.71
LIG1-216ENST00000598938 USP15Q9Y4E8 981 aaPredicted RBP19.47■□□□□ 0.71
LIG1-216ENST00000598938 SMTNL1A8MU46 457 aa19.46■□□□□ 0.71
LIG1-216ENST00000598938 P4HA1P13674 534 aa19.46■□□□□ 0.71
LIG1-216ENST00000598938 WARSP23381 471 aaKnown RBP19.46■□□□□ 0.71
LIG1-216ENST00000598938 NUBP1P53384 320 aa19.46■□□□□ 0.71
LIG1-216ENST00000598938 TCF15Q12870 199 aa19.46■□□□□ 0.71
LIG1-216ENST00000598938 MIIPQ5JXC2 388 aa19.46■□□□□ 0.71
LIG1-216ENST00000598938 IER5LQ5T953 404 aa19.46■□□□□ 0.71
LIG1-216ENST00000598938 LILRA6Q6PI73 481 aa19.46■□□□□ 0.71
LIG1-216ENST00000598938 LRSAM1Q6UWE0 723 aa19.46■□□□□ 0.71
LIG1-216ENST00000598938 TMEM184AQ6ZMB5 413 aa19.46■□□□□ 0.71
LIG1-216ENST00000598938 OSTM1Q86WC4 334 aa19.46■□□□□ 0.71
LIG1-216ENST00000598938 GLYCTKQ8IVS8 523 aa19.46■□□□□ 0.71
LIG1-216ENST00000598938 CCDC150Q8NCX0 1101 aa19.46■□□□□ 0.71
LIG1-216ENST00000598938 FAXDC2Q96IV6 333 aa19.46■□□□□ 0.71
LIG1-216ENST00000598938 PHOX2BQ99453 314 aa19.46■□□□□ 0.71
LIG1-216ENST00000598938 NIF3L1Q9GZT8 377 aa19.46■□□□□ 0.71
LIG1-216ENST00000598938 SMYD3Q9H7B4 428 aa19.46■□□□□ 0.71
LIG1-216ENST00000598938 HCFC2Q9Y5Z7 792 aa19.46■□□□□ 0.71
LIG1-216ENST00000598938 GLUD1P00367 558 aa19.45■□□□□ 0.7
LIG1-216ENST00000598938 EPCAMP16422 314 aa19.45■□□□□ 0.7
LIG1-216ENST00000598938 ASPAP45381 313 aa19.45■□□□□ 0.7
LIG1-216ENST00000598938 LHX1P48742 406 aa19.45■□□□□ 0.7
LIG1-216ENST00000598938 ROR1Q01973 937 aa19.45■□□□□ 0.7
LIG1-216ENST00000598938 CETN1Q12798 172 aa19.45■□□□□ 0.7
LIG1-216ENST00000598938 KRT31Q15323 416 aa19.45■□□□□ 0.7
LIG1-216ENST00000598938 VWA3BQ502W6 1294 aa19.45■□□□□ 0.7
LIG1-216ENST00000598938 PALB2Q86YC2 1186 aa19.45■□□□□ 0.7
LIG1-216ENST00000598938 THEM5Q8N1Q8 247 aa19.45■□□□□ 0.7
LIG1-216ENST00000598938 OR10T2Q8NGX3 314 aa19.45■□□□□ 0.7
LIG1-216ENST00000598938 LMO3Q8TAP4 145 aa19.45■□□□□ 0.7
LIG1-216ENST00000598938 SUSD6Q92537 303 aa19.45■□□□□ 0.7
LIG1-216ENST00000598938 MRPL45Q9BRJ2 306 aaKnown RBP19.45■□□□□ 0.7
LIG1-216ENST00000598938 BCO2Q9BYV7 579 aa19.45■□□□□ 0.7
LIG1-216ENST00000598938 SDCBP2Q9H190 292 aa19.45■□□□□ 0.7
LIG1-216ENST00000598938 NDST4Q9H3R1 872 aa19.45■□□□□ 0.7
LIG1-216ENST00000598938 CBX8Q9HC52 389 aa19.45■□□□□ 0.7
LIG1-216ENST00000598938 UTP3Q9NQZ2 479 aaKnown RBP eCLIP19.45■□□□□ 0.7
LIG1-216ENST00000598938 BARX2Q9UMQ3 279 aaPredicted RBP19.45■□□□□ 0.7
LIG1-216ENST00000598938 PLXNA3P51805 1871 aa19.44■□□□□ 0.7
LIG1-216ENST00000598938 WDR27A2RRH5 827 aa19.44■□□□□ 0.7
LIG1-216ENST00000598938 TGM5O43548 720 aa19.44■□□□□ 0.7
LIG1-216ENST00000598938 ABLIM3O94929 683 aa19.44■□□□□ 0.7
LIG1-216ENST00000598938 CLSTN1O94985 981 aa19.44■□□□□ 0.7
LIG1-216ENST00000598938 SRGAP2BP0DMP2 458 aa19.44■□□□□ 0.7
LIG1-216ENST00000598938 PRKCSHP14314 528 aaPredicted RBP19.44■□□□□ 0.7
LIG1-216ENST00000598938 ZNF445P59923 1031 aa19.44■□□□□ 0.7
LIG1-216ENST00000598938 RBM10P98175 930 aaKnown RBP19.44■□□□□ 0.7
LIG1-216ENST00000598938 WDR44Q5JSH3 913 aa19.44■□□□□ 0.7
LIG1-216ENST00000598938 LLGL2Q6P1M3 1020 aa19.44■□□□□ 0.7
LIG1-216ENST00000598938 SCARA5Q6ZMJ2 495 aa19.44■□□□□ 0.7
LIG1-216ENST00000598938 EHBP1Q8NDI1 1231 aa19.44■□□□□ 0.7
LIG1-216ENST00000598938 TMEM209Q96SK2 561 aa19.44■□□□□ 0.7
LIG1-216ENST00000598938 ACBD6Q9BR61 282 aa19.44■□□□□ 0.7
LIG1-216ENST00000598938 ZCWPW1Q9H0M4 648 aa19.44■□□□□ 0.7
LIG1-216ENST00000598938 DDX43Q9NXZ2 648 aaKnown RBP19.44■□□□□ 0.7
LIG1-216ENST00000598938 LIMA1Q9UHB6 759 aaKnown RBP19.44■□□□□ 0.7
LIG1-216ENST00000598938 GTPBP10A4D1E9 387 aaKnown RBP19.43■□□□□ 0.7
LIG1-216ENST00000598938 OR4Q2P0C623 313 aa19.43■□□□□ 0.7
LIG1-216ENST00000598938 RAP1GAPP47736 663 aa19.43■□□□□ 0.7
LIG1-216ENST00000598938 CDH8P55286 799 aa19.43■□□□□ 0.7
LIG1-216ENST00000598938 HDAC7Q8WUI4 952 aa19.43■□□□□ 0.7
LIG1-216ENST00000598938 CASP10Q92851 521 aa19.43■□□□□ 0.7
LIG1-216ENST00000598938 TATDN2Q93075 761 aa19.43■□□□□ 0.7
LIG1-216ENST00000598938 ASIC4Q96FT7 647 aa19.43■□□□□ 0.7
LIG1-216ENST00000598938 SNX25Q9H3E2 840 aa19.43■□□□□ 0.7
LIG1-216ENST00000598938 TSPY26PQ9H489 355 aa19.43■□□□□ 0.7
LIG1-216ENST00000598938 CYP3A43Q9HB55 503 aa19.43■□□□□ 0.7
LIG1-216ENST00000598938 TAB2Q9NYJ8 693 aa19.43■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms