RNA–Protein interactions for RNA: ENST00000597968.1

TRIM28-211, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 504 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-211ENST00000597968 KIAA2013Q8IYS2 634 aa14.68□□□□□ -0.06
TRIM28-211ENST00000597968 BPIFB1Q8TDL5 484 aa14.68□□□□□ -0.06
TRIM28-211ENST00000597968 CEP295NLQ96MC4 621 aa14.68□□□□□ -0.06
TRIM28-211ENST00000597968 ACBD6Q9BR61 282 aa14.68□□□□□ -0.06
TRIM28-211ENST00000597968 PYM1Q9BRP8 204 aaKnown RBP14.68□□□□□ -0.06
TRIM28-211ENST00000597968 CUEDC2Q9H467 287 aa14.68□□□□□ -0.06
TRIM28-211ENST00000597968 KIF9Q9HAQ2 790 aa14.68□□□□□ -0.06
TRIM28-211ENST00000597968 UXTQ9UBK9 157 aaPredicted RBP14.68□□□□□ -0.06
TRIM28-211ENST00000597968 ITGA11Q9UKX5 1188 aa14.68□□□□□ -0.06
TRIM28-211ENST00000597968 NDRG2Q9UN36 371 aaKnown RBP14.68□□□□□ -0.06
TRIM28-211ENST00000597968 PCDHB5Q9Y5E4 795 aa14.68□□□□□ -0.06
TRIM28-211ENST00000597968 COL4A2P08572 1712 aa14.68□□□□□ -0.06
TRIM28-211ENST00000597968 MYMKA6NI61 221 aa14.67□□□□□ -0.06
TRIM28-211ENST00000597968 NRG2O14511 850 aaPredicted RBP14.67□□□□□ -0.06
TRIM28-211ENST00000597968 FOXD2O60548 495 aaPredicted RBP14.67□□□□□ -0.06
TRIM28-211ENST00000597968 HAPLN1P10915 354 aaPredicted RBP14.67□□□□□ -0.06
TRIM28-211ENST00000597968 ATF6P18850 670 aa14.67□□□□□ -0.06
TRIM28-211ENST00000597968 CCNE1P24864 410 aa14.67□□□□□ -0.06
TRIM28-211ENST00000597968 HOXA6P31267 233 aa14.67□□□□□ -0.06
TRIM28-211ENST00000597968 KPNA1P52294 538 aaPredicted RBP14.67□□□□□ -0.06
TRIM28-211ENST00000597968 AMPD2Q01433 879 aa14.67□□□□□ -0.06
TRIM28-211ENST00000597968 RESTQ13127 1097 aa14.67□□□□□ -0.06
TRIM28-211ENST00000597968 SURF1Q15526 300 aa14.67□□□□□ -0.06
TRIM28-211ENST00000597968 GPR158Q5T848 1215 aa14.67□□□□□ -0.06
TRIM28-211ENST00000597968 DPH6Q7L8W6 267 aa14.67□□□□□ -0.06
TRIM28-211ENST00000597968 EFCAB13Q8IY85 973 aa14.67□□□□□ -0.06
TRIM28-211ENST00000597968 FAM200AQ8TCP9 573 aa14.67□□□□□ -0.06
TRIM28-211ENST00000597968 EXOC4Q96A65 974 aa14.67□□□□□ -0.06
TRIM28-211ENST00000597968 TMEM209Q96SK2 561 aa14.67□□□□□ -0.06
TRIM28-211ENST00000597968 SEPT5Q99719 369 aaPredicted RBP14.67□□□□□ -0.06
TRIM28-211ENST00000597968 IL21Q9HBE4 155 aa14.67□□□□□ -0.06
TRIM28-211ENST00000597968 GDAP2Q9NXN4 497 aa14.67□□□□□ -0.06
TRIM28-211ENST00000597968 RAB23Q9ULC3 237 aa14.67□□□□□ -0.06
TRIM28-211ENST00000597968 SMG5Q9UPR3 1016 aaKnown RBP14.67□□□□□ -0.06
TRIM28-211ENST00000597968 SPTBN4Q9H254 2564 aa14.66□□□□□ -0.06
TRIM28-211ENST00000597968 SPECC1L-ADORA2AF8WAN1 911 aa14.66□□□□□ -0.06
TRIM28-211ENST00000597968 EXTL3O43909 919 aa14.66□□□□□ -0.06
TRIM28-211ENST00000597968 HUS1O60921 280 aa14.66□□□□□ -0.06
TRIM28-211ENST00000597968 GCNT3O95395 438 aa14.66□□□□□ -0.06
TRIM28-211ENST00000597968 CSH1P0DML2 217 aa14.66□□□□□ -0.06
TRIM28-211ENST00000597968 CSH2P0DML3 217 aa14.66□□□□□ -0.06
TRIM28-211ENST00000597968 CTHP32929 405 aa14.66□□□□□ -0.06
TRIM28-211ENST00000597968 LHX1P48742 406 aa14.66□□□□□ -0.06
TRIM28-211ENST00000597968 RPL10AP62906 217 aaKnown RBP14.66□□□□□ -0.06
TRIM28-211ENST00000597968 MYL7Q01449 175 aa14.66□□□□□ -0.06
TRIM28-211ENST00000597968 LMNB2Q03252 620 aa14.66□□□□□ -0.06
TRIM28-211ENST00000597968 WSCD1Q658N2 575 aa14.66□□□□□ -0.06
TRIM28-211ENST00000597968 USP49Q70CQ1 688 aa14.66□□□□□ -0.06
TRIM28-211ENST00000597968 CCDC65Q8IXS2 484 aa14.66□□□□□ -0.06
TRIM28-211ENST00000597968 SYCP3Q8IZU3 236 aa14.66□□□□□ -0.06
TRIM28-211ENST00000597968 CMTM8Q8IZV2 173 aa14.66□□□□□ -0.06
TRIM28-211ENST00000597968 TOP6BLQ8N6T0 577 aa14.66□□□□□ -0.06
TRIM28-211ENST00000597968 RMDN1Q96DB5 314 aa14.66□□□□□ -0.06
TRIM28-211ENST00000597968 FUBP3Q96I24 572 aaKnown RBP eCLIP14.66□□□□□ -0.06
TRIM28-211ENST00000597968 BACH2Q9BYV9 841 aa14.66□□□□□ -0.06
TRIM28-211ENST00000597968 TNMDQ9H2S6 317 aa14.66□□□□□ -0.06
TRIM28-211ENST00000597968 KIAA1586Q9HCI6 787 aa14.66□□□□□ -0.06
TRIM28-211ENST00000597968 FOXD4L1Q9NU39 408 aa14.66□□□□□ -0.06
TRIM28-211ENST00000597968 RBAKQ9NYW8 714 aaPredicted RBP14.66□□□□□ -0.06
TRIM28-211ENST00000597968 GMEB2Q9UKD1 530 aa14.66□□□□□ -0.06
TRIM28-211ENST00000597968 OTOGLQ3ZCN5 2332 aa14.65□□□□□ -0.06
TRIM28-211ENST00000597968 TSC2P49815 1807 aa14.65□□□□□ -0.06
TRIM28-211ENST00000597968 TISP43B9A030 160 aa14.65□□□□□ -0.06
TRIM28-211ENST00000597968 PCSK1P29120 753 aa14.65□□□□□ -0.06
TRIM28-211ENST00000597968 AVPR1AP37288 418 aa14.65□□□□□ -0.06
TRIM28-211ENST00000597968 STAT6P42226 847 aa14.65□□□□□ -0.06
TRIM28-211ENST00000597968 NASPP49321 788 aaPredicted RBP14.65□□□□□ -0.06
TRIM28-211ENST00000597968 SNRPFP62306 86 aaKnown RBP14.65□□□□□ -0.06
TRIM28-211ENST00000597968 RBP5P82980 135 aa14.65□□□□□ -0.06
TRIM28-211ENST00000597968 AMPD3Q01432 767 aa14.65□□□□□ -0.06
TRIM28-211ENST00000597968 ZNF268Q14587 947 aaPredicted RBP14.65□□□□□ -0.06
TRIM28-211ENST00000597968 ITPRIPL2Q3MIP1 535 aa14.65□□□□□ -0.06
TRIM28-211ENST00000597968 CFAP221Q4G0U5 840 aa14.65□□□□□ -0.06
TRIM28-211ENST00000597968 LAIR1Q6GTX8 287 aa14.65□□□□□ -0.06
TRIM28-211ENST00000597968 DGLUCYQ7Z3D6 616 aa14.65□□□□□ -0.06
TRIM28-211ENST00000597968 TMEM130Q8N3G9 435 aa14.65□□□□□ -0.06
TRIM28-211ENST00000597968 RSPRY1Q96DX4 576 aa14.65□□□□□ -0.06
TRIM28-211ENST00000597968 TRMT2BQ96GJ1 504 aaKnown RBP14.65□□□□□ -0.06
TRIM28-211ENST00000597968 MYRFLQ96LU7 910 aa14.65□□□□□ -0.06
TRIM28-211ENST00000597968 FAM213AQ9BRX8 229 aa14.65□□□□□ -0.06
TRIM28-211ENST00000597968 R3HCC1Q9Y3T6 440 aaKnown RBP14.65□□□□□ -0.06
TRIM28-211ENST00000597968 EP300Q09472 2414 aaPredicted RBP14.65□□□□□ -0.06
TRIM28-211ENST00000597968 NCANO14594 1321 aa14.65□□□□□ -0.06
TRIM28-211ENST00000597968 COL4A3Q01955 1670 aa14.65□□□□□ -0.06
TRIM28-211ENST00000597968 NUP210Q8TEM1 1887 aaPredicted RBP14.64□□□□□ -0.07
TRIM28-211ENST00000597968 CCDC163A0A0D9SF12 145 aa14.64□□□□□ -0.07
TRIM28-211ENST00000597968 PPP6R2O75170 966 aa14.64□□□□□ -0.07
TRIM28-211ENST00000597968 ITGB3P05106 788 aa14.64□□□□□ -0.07
TRIM28-211ENST00000597968 FAM163BP0C2L3 166 aa14.64□□□□□ -0.07
TRIM28-211ENST00000597968 IDEP14735 1019 aa14.64□□□□□ -0.07
TRIM28-211ENST00000597968 NLRP12P59046 1061 aa14.64□□□□□ -0.07
TRIM28-211ENST00000597968 TFAMQ00059 246 aaKnown RBP14.64□□□□□ -0.07
TRIM28-211ENST00000597968 MYO1EQ12965 1108 aa14.64□□□□□ -0.07
TRIM28-211ENST00000597968 CCINQ13939 588 aa14.64□□□□□ -0.07
TRIM28-211ENST00000597968 STXBP5Q5T5C0 1151 aa14.64□□□□□ -0.07
TRIM28-211ENST00000597968 FAM173BQ6P4H8 233 aa14.64□□□□□ -0.07
TRIM28-211ENST00000597968 CNNM4Q6P4Q7 775 aa14.64□□□□□ -0.07
TRIM28-211ENST00000597968 LRRTM3Q86VH5 581 aa14.64□□□□□ -0.07
TRIM28-211ENST00000597968 LONP2Q86WA8 852 aa14.64□□□□□ -0.07
TRIM28-211ENST00000597968 GPD1LQ8N335 351 aa14.64□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 42.2 ms