RNA–Protein interactions for RNA: ENST00000597423.1

TRIM28-209, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 733 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-209ENST00000597423 SLC11A1P49279 550 aa16.21■□□□□ 0.19
TRIM28-209ENST00000597423 VAV2P52735 878 aa16.21■□□□□ 0.19
TRIM28-209ENST00000597423 BCAR1P56945 870 aa16.21■□□□□ 0.19
TRIM28-209ENST00000597423 SNX16P57768 344 aa16.21■□□□□ 0.19
TRIM28-209ENST00000597423 FMO1Q01740 532 aa16.21■□□□□ 0.19
TRIM28-209ENST00000597423 ARHGAP29Q52LW3 1261 aa16.21■□□□□ 0.19
TRIM28-209ENST00000597423 OVOS1Q6IE37 1185 aa16.21■□□□□ 0.19
TRIM28-209ENST00000597423 ACAD10Q6JQN1 1059 aa16.21■□□□□ 0.19
TRIM28-209ENST00000597423 FAM117BQ6P1L5 589 aa16.21■□□□□ 0.19
TRIM28-209ENST00000597423 MSANTD4Q8NCY6 345 aa16.21■□□□□ 0.19
TRIM28-209ENST00000597423 C3orf58Q8NDZ4 430 aa16.21■□□□□ 0.19
TRIM28-209ENST00000597423 ACRBPQ8NEB7 543 aa16.21■□□□□ 0.19
TRIM28-209ENST00000597423 KBTBD7Q8WVZ9 684 aa16.21■□□□□ 0.19
TRIM28-209ENST00000597423 TRIM11Q96F44 468 aa16.21■□□□□ 0.19
TRIM28-209ENST00000597423 ZNF558Q96NG5 402 aa16.21■□□□□ 0.19
TRIM28-209ENST00000597423 NOX5Q96PH1 765 aa16.21■□□□□ 0.19
TRIM28-209ENST00000597423 ACBD6Q9BR61 282 aa16.21■□□□□ 0.19
TRIM28-209ENST00000597423 BUD13Q9BRD0 619 aaKnown RBP eCLIP16.21■□□□□ 0.191e-12■■□□□ 11.5
TRIM28-209ENST00000597423 OXCT2Q9BYC2 517 aaPredicted RBP16.21■□□□□ 0.19
TRIM28-209ENST00000597423 LHX5Q9H2C1 402 aa16.21■□□□□ 0.19
TRIM28-209ENST00000597423 ACP6Q9NPH0 428 aa16.21■□□□□ 0.19
TRIM28-209ENST00000597423 DDX43Q9NXZ2 648 aaKnown RBP16.21■□□□□ 0.19
TRIM28-209ENST00000597423 CACNG4Q9UBN1 327 aa16.21■□□□□ 0.19
TRIM28-209ENST00000597423 DNAJB4Q9UDY4 337 aa16.21■□□□□ 0.19
TRIM28-209ENST00000597423 CDH9Q9ULB4 789 aa16.21■□□□□ 0.19
TRIM28-209ENST00000597423 ATP8B3O60423 1300 aa16.2■□□□□ 0.18
TRIM28-209ENST00000597423 SF3B1O75533 1304 aaKnown RBP eCLIP16.2■□□□□ 0.184e-6■■■■□ 26.1
TRIM28-209ENST00000597423 GJB5O95377 273 aa16.2■□□□□ 0.18
TRIM28-209ENST00000597423 FTLP02792 175 aaPredicted RBP16.2■□□□□ 0.18
TRIM28-209ENST00000597423 NSFP46459 744 aaKnown RBP16.2■□□□□ 0.18
TRIM28-209ENST00000597423 BRCC3P46736 316 aa16.2■□□□□ 0.18
TRIM28-209ENST00000597423 SLC8A3P57103 927 aa16.2■□□□□ 0.18
TRIM28-209ENST00000597423 YWHAHQ04917 246 aaPredicted RBP16.2■□□□□ 0.18
TRIM28-209ENST00000597423 MAPRE1Q15691 268 aaKnown RBP16.2■□□□□ 0.18
TRIM28-209ENST00000597423 CLEC16AQ2KHT3 1053 aa16.2■□□□□ 0.18
TRIM28-209ENST00000597423 CD300LGQ6UXG3 332 aa16.2■□□□□ 0.18
TRIM28-209ENST00000597423 ACOT1Q86TX2 421 aa16.2■□□□□ 0.18
TRIM28-209ENST00000597423 LNX1Q8TBB1 728 aaPredicted RBP16.2■□□□□ 0.18
TRIM28-209ENST00000597423 CALR3Q96L12 384 aaKnown RBP16.2■□□□□ 0.18
TRIM28-209ENST00000597423 RAD9AQ99638 391 aa16.2■□□□□ 0.18
TRIM28-209ENST00000597423 MIS12Q9H081 205 aa16.2■□□□□ 0.18
TRIM28-209ENST00000597423 HESX1Q9UBX0 185 aa16.2■□□□□ 0.18
TRIM28-209ENST00000597423 SCN5AQ14524 2016 aa16.19■□□□□ 0.18
TRIM28-209ENST00000597423 H7C4K7 107 aa16.19■□□□□ 0.18
TRIM28-209ENST00000597423 PTPN1P18031 435 aaKnown RBP16.19■□□□□ 0.18
TRIM28-209ENST00000597423 BRD2P25440 801 aaKnown RBP16.19■□□□□ 0.18
TRIM28-209ENST00000597423 TSPY1Q01534 308 aa16.19■□□□□ 0.18
TRIM28-209ENST00000597423 IFI16Q16666 785 aaKnown RBP16.19■□□□□ 0.18
TRIM28-209ENST00000597423 ARHGAP17Q68EM7 881 aa16.19■□□□□ 0.18
TRIM28-209ENST00000597423 LCLAT1Q6UWP7 414 aa16.19■□□□□ 0.18
TRIM28-209ENST00000597423 FIBCD1Q8N539 461 aa16.19■□□□□ 0.18
TRIM28-209ENST00000597423 B3GALNT2Q8NCR0 500 aa16.19■□□□□ 0.18
TRIM28-209ENST00000597423 HASPINQ8TF76 798 aa16.19■□□□□ 0.18
TRIM28-209ENST00000597423 CTNNBL1Q8WYA6 563 aaPredicted RBP16.19■□□□□ 0.18
TRIM28-209ENST00000597423 VCPIP1Q96JH7 1222 aa16.19■□□□□ 0.18
TRIM28-209ENST00000597423 PPP1R13BQ96KQ4 1090 aa16.19■□□□□ 0.18
TRIM28-209ENST00000597423 TWNKQ96RR1 684 aa16.19■□□□□ 0.18
TRIM28-209ENST00000597423 ISCUQ9H1K1 167 aa16.19■□□□□ 0.18
TRIM28-209ENST00000597423 CWH43Q9H720 699 aa16.19■□□□□ 0.18
TRIM28-209ENST00000597423 PCDHB12Q9Y5F1 795 aa16.19■□□□□ 0.18
TRIM28-209ENST00000597423 TET1Q8NFU7 2136 aa16.18■□□□□ 0.18
TRIM28-209ENST00000597423 ANKRD62A6NC57 917 aa16.18■□□□□ 0.18
TRIM28-209ENST00000597423 TMCO5BA8MYB1 307 aa16.18■□□□□ 0.18
TRIM28-209ENST00000597423 I3L4J1 428 aa16.18■□□□□ 0.18
TRIM28-209ENST00000597423 KIF2AO00139 706 aaPredicted RBP16.18■□□□□ 0.18
TRIM28-209ENST00000597423 ZNF263O14978 683 aa16.18■□□□□ 0.18
TRIM28-209ENST00000597423 PJA2O43164 708 aa16.18■□□□□ 0.18
TRIM28-209ENST00000597423 KIF5CO60282 957 aa16.18■□□□□ 0.18
TRIM28-209ENST00000597423 ZNF500O60304 480 aaPredicted RBP16.18■□□□□ 0.18
TRIM28-209ENST00000597423 OAZ2O95190 189 aa16.18■□□□□ 0.18
TRIM28-209ENST00000597423 CYP1A1P04798 512 aaPredicted RBP16.18■□□□□ 0.18
TRIM28-209ENST00000597423 MYBL1P10243 752 aa16.18■□□□□ 0.18
TRIM28-209ENST00000597423 ATP2A2P16615 1042 aaKnown RBP16.18■□□□□ 0.18
TRIM28-209ENST00000597423 LMO2P25791 158 aa16.18■□□□□ 0.18
TRIM28-209ENST00000597423 PPM1AP35813 382 aa16.18■□□□□ 0.18
TRIM28-209ENST00000597423 EPHB4P54760 987 aa16.18■□□□□ 0.18
TRIM28-209ENST00000597423 GPC5P78333 572 aa16.18■□□□□ 0.18
TRIM28-209ENST00000597423 LIN9Q5TKA1 542 aa16.18■□□□□ 0.18
TRIM28-209ENST00000597423 FAM171A1Q5VUB5 890 aa16.18■□□□□ 0.18
TRIM28-209ENST00000597423 KCNT2Q6UVM3 1135 aa16.18■□□□□ 0.18
TRIM28-209ENST00000597423 PDZRN4Q6ZMN7 1036 aaPredicted RBP16.18■□□□□ 0.18
TRIM28-209ENST00000597423 HERC6Q8IVU3 1022 aa16.18■□□□□ 0.18
TRIM28-209ENST00000597423 REXO1L1PQ8IX06 675 aa16.18■□□□□ 0.18
TRIM28-209ENST00000597423 DCP1BQ8IZD4 617 aaKnown RBP16.18■□□□□ 0.18
TRIM28-209ENST00000597423 RNF10Q8N5U6 811 aaKnown RBP16.18■□□□□ 0.18
TRIM28-209ENST00000597423 TFAP2BQ92481 460 aa16.18■□□□□ 0.18
TRIM28-209ENST00000597423 CYFIP2Q96F07 1278 aa16.18■□□□□ 0.18
TRIM28-209ENST00000597423 PCDHB18PQ96TA0 734 aa16.18■□□□□ 0.18
TRIM28-209ENST00000597423 SPG21Q9NZD8 308 aa16.18■□□□□ 0.18
TRIM28-209ENST00000597423 HMGXB4Q9UGU5 601 aa16.18■□□□□ 0.18
TRIM28-209ENST00000597423 WDR3Q9UNX4 943 aaKnown RBP eCLIP16.18■□□□□ 0.18
TRIM28-209ENST00000597423 REXO2Q9Y3B8 237 aaKnown RBP16.18■□□□□ 0.18
TRIM28-209ENST00000597423 TIMM13Q9Y5L4 95 aaPredicted RBP16.18■□□□□ 0.18
TRIM28-209ENST00000597423 TRIP11Q15643 1979 aa16.18■□□□□ 0.18
TRIM28-209ENST00000597423 PDCD11Q14690 1871 aaKnown RBP16.17■□□□□ 0.18
TRIM28-209ENST00000597423 OR6C75A6NL08 312 aa16.17■□□□□ 0.18
TRIM28-209ENST00000597423 O00370 1275 aa16.17■□□□□ 0.18
TRIM28-209ENST00000597423 B4GALT3O60512 393 aa16.17■□□□□ 0.18
TRIM28-209ENST00000597423 ITGB1P05556 798 aa16.17■□□□□ 0.18
TRIM28-209ENST00000597423 TMEM253P0C7T8 217 aa16.17■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms