RNA–Protein interactions for RNA: ENST00000597172.5

TRIM28-208, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 577 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-208ENST00000597172 TAS1R2Q8TE23 839 aa10.16□□□□□ -0.78
TRIM28-208ENST00000597172 C18orf25Q96B23 403 aaPredicted RBP10.16□□□□□ -0.78
TRIM28-208ENST00000597172 PGBD4Q96DM1 585 aa10.16□□□□□ -0.78
TRIM28-208ENST00000597172 KIF12Q96FN5 646 aa10.16□□□□□ -0.78
TRIM28-208ENST00000597172 MTMR12Q9C0I1 747 aa10.16□□□□□ -0.78
TRIM28-208ENST00000597172 TMEM161AQ9NX61 479 aa10.16□□□□□ -0.78
TRIM28-208ENST00000597172 DLGAP2Q9P1A6 1054 aa10.16□□□□□ -0.78
TRIM28-208ENST00000597172 SIX4Q9UIU6 781 aa10.16□□□□□ -0.78
TRIM28-208ENST00000597172 GMEB2Q9UKD1 530 aa10.16□□□□□ -0.78
TRIM28-208ENST00000597172 DERAQ9Y315 318 aa10.16□□□□□ -0.78
TRIM28-208ENST00000597172 SIT1Q9Y3P8 196 aa10.16□□□□□ -0.78
TRIM28-208ENST00000597172 C2CD2Q9Y426 696 aa10.16□□□□□ -0.78
TRIM28-208ENST00000597172 PCDHGA2Q9Y5H1 932 aa10.16□□□□□ -0.78
TRIM28-208ENST00000597172 DYNC1LI1Q9Y6G9 523 aaKnown RBP10.16□□□□□ -0.78
TRIM28-208ENST00000597172 ITPR1Q14643 2758 aa10.15□□□□□ -0.78
TRIM28-208ENST00000597172 PLXNA4Q9HCM2 1894 aa10.15□□□□□ -0.78
TRIM28-208ENST00000597172 GTPBP10A4D1E9 387 aaKnown RBP10.15□□□□□ -0.78
TRIM28-208ENST00000597172 CYSRT1A8MQ03 144 aa10.15□□□□□ -0.78
TRIM28-208ENST00000597172 RNF225M0QZC1 329 aaPredicted RBP10.15□□□□□ -0.78
TRIM28-208ENST00000597172 FSCN2O14926 492 aa10.15□□□□□ -0.78
TRIM28-208ENST00000597172 NOL4O94818 638 aa10.15□□□□□ -0.78
TRIM28-208ENST00000597172 WEE2P0C1S8 567 aa10.15□□□□□ -0.78
TRIM28-208ENST00000597172 CDC25BP30305 580 aa10.15□□□□□ -0.78
TRIM28-208ENST00000597172 MLH1P40692 756 aa10.15□□□□□ -0.78
TRIM28-208ENST00000597172 MXI1P50539 228 aa10.15□□□□□ -0.78
TRIM28-208ENST00000597172 MYL7Q01449 175 aa10.15□□□□□ -0.78
TRIM28-208ENST00000597172 SOX4Q06945 474 aaPredicted RBP10.15□□□□□ -0.78
TRIM28-208ENST00000597172 TBX2Q13207 712 aaPredicted RBP10.15□□□□□ -0.78
TRIM28-208ENST00000597172 TMEM132DQ14C87 1099 aa10.15□□□□□ -0.78
TRIM28-208ENST00000597172 EXOC3L4Q17RC7 722 aa10.15□□□□□ -0.78
TRIM28-208ENST00000597172 PAN2Q504Q3 1202 aaKnown RBP10.15□□□□□ -0.78
TRIM28-208ENST00000597172 GLRA4Q5JXX5 417 aa10.15□□□□□ -0.78
TRIM28-208ENST00000597172 FKBP15Q5T1M5 1219 aa10.15□□□□□ -0.78
TRIM28-208ENST00000597172 GBP6Q6ZN66 633 aa10.15□□□□□ -0.78
TRIM28-208ENST00000597172 NT5DC4Q86YG4 428 aa10.15□□□□□ -0.78
TRIM28-208ENST00000597172 HACE1Q8IYU2 909 aa10.15□□□□□ -0.78
TRIM28-208ENST00000597172 C1orf127Q8N9H9 656 aa10.15□□□□□ -0.78
TRIM28-208ENST00000597172 CACTINQ8WUQ7 758 aaKnown RBP10.15□□□□□ -0.78
TRIM28-208ENST00000597172 CASP10Q92851 521 aa10.15□□□□□ -0.78
TRIM28-208ENST00000597172 ELMO3Q96BJ8 720 aa10.15□□□□□ -0.78
TRIM28-208ENST00000597172 ACSF2Q96CM8 615 aaPredicted RBP10.15□□□□□ -0.78
TRIM28-208ENST00000597172 CASD1Q96PB1 797 aa10.15□□□□□ -0.78
TRIM28-208ENST00000597172 PPP1R10Q96QC0 940 aaKnown RBP10.15□□□□□ -0.78
TRIM28-208ENST00000597172 TSPAN18Q96SJ8 248 aa10.15□□□□□ -0.78
TRIM28-208ENST00000597172 EPC1Q9H2F5 836 aa10.15□□□□□ -0.78
TRIM28-208ENST00000597172 RSAD1Q9HA92 442 aa10.15□□□□□ -0.78
TRIM28-208ENST00000597172 SIX2Q9NPC8 291 aa10.15□□□□□ -0.78
TRIM28-208ENST00000597172 UBN1Q9NPG3 1134 aa10.15□□□□□ -0.78
TRIM28-208ENST00000597172 PCDHB7Q9Y5E2 793 aa10.15□□□□□ -0.78
TRIM28-208ENST00000597172 PCDHB12Q9Y5F1 795 aa10.15□□□□□ -0.78
TRIM28-208ENST00000597172 KIAA1671Q9BY89 1806 aa10.14□□□□□ -0.79
TRIM28-208ENST00000597172 RALGAPA1Q6GYQ0 2036 aa10.14□□□□□ -0.79
TRIM28-208ENST00000597172 DMXL2Q8TDJ6 3036 aa10.14□□□□□ -0.79
TRIM28-208ENST00000597172 SRRM3A6NNA2 597 aaPredicted RBP10.14□□□□□ -0.79
TRIM28-208ENST00000597172 EPHB6O15197 1021 aa10.14□□□□□ -0.79
TRIM28-208ENST00000597172 TBC1D4O60343 1298 aa10.14□□□□□ -0.79
TRIM28-208ENST00000597172 N4BP1O75113 896 aaKnown RBP10.14□□□□□ -0.79
TRIM28-208ENST00000597172 HLA-DRAP01903 254 aa10.14□□□□□ -0.79
TRIM28-208ENST00000597172 TPM3P06753 285 aa10.14□□□□□ -0.79
TRIM28-208ENST00000597172 CFHP08603 1231 aa10.14□□□□□ -0.79
TRIM28-208ENST00000597172 FGFR1P11362 822 aa10.14□□□□□ -0.79
TRIM28-208ENST00000597172 CYP3A5P20815 502 aa10.14□□□□□ -0.79
TRIM28-208ENST00000597172 IGFBP6P24592 240 aaPredicted RBP10.14□□□□□ -0.79
TRIM28-208ENST00000597172 GATMP50440 423 aa10.14□□□□□ -0.79
TRIM28-208ENST00000597172 SCNN1GP51170 649 aa10.14□□□□□ -0.79
TRIM28-208ENST00000597172 SPEM2Q0P670 501 aa10.14□□□□□ -0.79
TRIM28-208ENST00000597172 ATAT1Q5SQI0 421 aa10.14□□□□□ -0.79
TRIM28-208ENST00000597172 KLHDC7AQ5VTJ3 777 aa10.14□□□□□ -0.79
TRIM28-208ENST00000597172 PLPP4Q5VZY2 271 aa10.14□□□□□ -0.79
TRIM28-208ENST00000597172 ARHGAP30Q7Z6I6 1101 aaPredicted RBP10.14□□□□□ -0.79
TRIM28-208ENST00000597172 FBXL13Q8NEE6 735 aa10.14□□□□□ -0.79
TRIM28-208ENST00000597172 HELQQ8TDG4 1101 aa10.14□□□□□ -0.79
TRIM28-208ENST00000597172 TATDN2Q93075 761 aa10.14□□□□□ -0.79
TRIM28-208ENST00000597172 ANKRD36BP1Q96IX9 119 aa10.14□□□□□ -0.79
TRIM28-208ENST00000597172 PDLIM2Q96JY6 352 aa10.14□□□□□ -0.79
TRIM28-208ENST00000597172 PI4K2AQ9BTU6 479 aa10.14□□□□□ -0.79
TRIM28-208ENST00000597172 INTS2Q9H0H0 1204 aaKnown RBP10.14□□□□□ -0.79
TRIM28-208ENST00000597172 KCNK12Q9HB15 430 aa10.14□□□□□ -0.79
TRIM28-208ENST00000597172 RAB20Q9NX57 234 aa10.14□□□□□ -0.79
TRIM28-208ENST00000597172 DPP3Q9NY33 737 aa10.14□□□□□ -0.79
TRIM28-208ENST00000597172 TUBGCP4Q9UGJ1 667 aa10.14□□□□□ -0.79
TRIM28-208ENST00000597172 CA14Q9ULX7 337 aa10.14□□□□□ -0.79
TRIM28-208ENST00000597172 ITIH6Q6UXX5 1313 aa10.13□□□□□ -0.79
TRIM28-208ENST00000597172 ANK1P16157 1881 aa10.13□□□□□ -0.79
TRIM28-208ENST00000597172 ANO9A1A5B4 782 aa10.13□□□□□ -0.79
TRIM28-208ENST00000597172 PIRO00625 290 aa10.13□□□□□ -0.79
TRIM28-208ENST00000597172 PPEF2O14830 753 aa10.13□□□□□ -0.79
TRIM28-208ENST00000597172 NARSO43776 548 aaKnown RBP10.13□□□□□ -0.79
TRIM28-208ENST00000597172 B4GALT3O60512 393 aa10.13□□□□□ -0.79
TRIM28-208ENST00000597172 POMCP01189 267 aa10.13□□□□□ -0.79
TRIM28-208ENST00000597172 TNNC2P02585 160 aa10.13□□□□□ -0.79
TRIM28-208ENST00000597172 ITGB3P05106 788 aa10.13□□□□□ -0.79
TRIM28-208ENST00000597172 THP07101 528 aa10.13□□□□□ -0.79
TRIM28-208ENST00000597172 TMEM191BP0C7N4 346 aa10.13□□□□□ -0.79
TRIM28-208ENST00000597172 MYL6P60660 151 aa10.13□□□□□ -0.79
TRIM28-208ENST00000597172 BIRC3Q13489 604 aa10.13□□□□□ -0.79
TRIM28-208ENST00000597172 NCOA4Q13772 614 aa10.13□□□□□ -0.79
TRIM28-208ENST00000597172 SPECC1LQ69YQ0 1117 aa10.13□□□□□ -0.79
TRIM28-208ENST00000597172 PHLDB3Q6NSJ2 640 aa10.13□□□□□ -0.79
TRIM28-208ENST00000597172 GJB7Q6PEY0 223 aa10.13□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms