RNA–Protein interactions for RNA: ENST00000594243.1

UPF1-202, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 683 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-202ENST00000594243 DUSP4Q13115 394 aa16.1■□□□□ 0.17
UPF1-202ENST00000594243 PLD1Q13393 1074 aa16.1■□□□□ 0.17
UPF1-202ENST00000594243 NFE2Q16621 373 aaPredicted RBP16.1■□□□□ 0.17
UPF1-202ENST00000594243 TCERG1LQ5VWI1 586 aa16.1■□□□□ 0.17
UPF1-202ENST00000594243 GRASPQ7Z6J2 395 aaPredicted RBP16.1■□□□□ 0.17
UPF1-202ENST00000594243 FRMD5Q7Z6J6 570 aa16.1■□□□□ 0.17
UPF1-202ENST00000594243 ELMOD1Q8N336 334 aa16.1■□□□□ 0.17
UPF1-202ENST00000594243 PLCD3Q8N3E9 789 aa16.1■□□□□ 0.17
UPF1-202ENST00000594243 CCDC150Q8NCX0 1101 aa16.1■□□□□ 0.17
UPF1-202ENST00000594243 SPPL2BQ8TCT7 592 aa16.1■□□□□ 0.17
UPF1-202ENST00000594243 ACSF2Q96CM8 615 aaPredicted RBP16.1■□□□□ 0.17
UPF1-202ENST00000594243 IMPG2Q9BZV3 1241 aa16.1■□□□□ 0.17
UPF1-202ENST00000594243 SNX25Q9H3E2 840 aa16.1■□□□□ 0.17
UPF1-202ENST00000594243 MMRN2Q9H8L6 949 aa16.1■□□□□ 0.17
UPF1-202ENST00000594243 DACH1Q9UI36 760 aa16.1■□□□□ 0.17
UPF1-202ENST00000594243 RWDD2AQ9UIY3 292 aa16.1■□□□□ 0.17
UPF1-202ENST00000594243 INSL5Q9Y5Q6 135 aa16.1■□□□□ 0.17
UPF1-202ENST00000594243 GNL1P36915 607 aaPredicted RBP16.09■□□□□ 0.17
UPF1-202ENST00000594243 PIK3CAP42336 1068 aa16.09■□□□□ 0.17
UPF1-202ENST00000594243 ALDH1A3P47895 512 aa16.09■□□□□ 0.17
UPF1-202ENST00000594243 STX17P56962 302 aa16.09■□□□□ 0.17
UPF1-202ENST00000594243 CCDC40Q4G0X9 1142 aa16.09■□□□□ 0.17
UPF1-202ENST00000594243 DCAF17Q5H9S7 520 aaPredicted RBP16.09■□□□□ 0.17
UPF1-202ENST00000594243 IQCEQ6IPM2 695 aa16.09■□□□□ 0.17
UPF1-202ENST00000594243 OTOP3Q7RTS5 596 aa16.09■□□□□ 0.17
UPF1-202ENST00000594243 LRRTM3Q86VH5 581 aa16.09■□□□□ 0.17
UPF1-202ENST00000594243 FEZF2Q8TBJ5 459 aa16.09■□□□□ 0.17
UPF1-202ENST00000594243 KBTBD7Q8WVZ9 684 aa16.09■□□□□ 0.17
UPF1-202ENST00000594243 ZNF512Q96ME7 567 aaPredicted RBP16.09■□□□□ 0.17
UPF1-202ENST00000594243 CDH9Q9ULB4 789 aa16.09■□□□□ 0.17
UPF1-202ENST00000594243 SLC27A5Q9Y2P5 690 aa16.09■□□□□ 0.17
UPF1-202ENST00000594243 PCDHB5Q9Y5E4 795 aa16.09■□□□□ 0.17
UPF1-202ENST00000594243 CLUHO75153 1309 aa16.09■□□□□ 0.17
UPF1-202ENST00000594243 ASS1P00966 412 aaKnown RBP16.08■□□□□ 0.16
UPF1-202ENST00000594243 HLA-DRAP01903 254 aa16.08■□□□□ 0.16
UPF1-202ENST00000594243 EPHB3P54753 998 aa16.08■□□□□ 0.16
UPF1-202ENST00000594243 NLRP12P59046 1061 aa16.08■□□□□ 0.16
UPF1-202ENST00000594243 TWF1Q12792 350 aa16.08■□□□□ 0.16
UPF1-202ENST00000594243 MAPRE1Q15691 268 aaKnown RBP16.08■□□□□ 0.16
UPF1-202ENST00000594243 INTS6LQ5JSJ4 861 aaKnown RBP16.08■□□□□ 0.16
UPF1-202ENST00000594243 OSTM1Q86WC4 334 aa16.08■□□□□ 0.16
UPF1-202ENST00000594243 TDRD5Q8NAT2 981 aaKnown RBP16.08■□□□□ 0.16
UPF1-202ENST00000594243 ATAD1Q8NBU5 361 aa16.08■□□□□ 0.16
UPF1-202ENST00000594243 OR6B3Q8NGW1 331 aa16.08■□□□□ 0.16
UPF1-202ENST00000594243 SRRTQ9BXP5 876 aaKnown RBP16.08■□□□□ 0.16
UPF1-202ENST00000594243 CD320Q9NPF0 282 aa16.08■□□□□ 0.16
UPF1-202ENST00000594243 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP16.08■□□□□ 0.16
UPF1-202ENST00000594243 DNMT3BQ9UBC3 853 aaKnown RBP16.08■□□□□ 0.16
UPF1-202ENST00000594243 GTF3C4Q9UKN8 822 aa16.08■□□□□ 0.16
UPF1-202ENST00000594243 VNN2O95498 520 aa16.07■□□□□ 0.16
UPF1-202ENST00000594243 PDGFRBP09619 1106 aa16.07■□□□□ 0.16
UPF1-202ENST00000594243 SP100P23497 879 aaPredicted RBP16.07■□□□□ 0.16
UPF1-202ENST00000594243 FSHRP23945 695 aa16.07■□□□□ 0.16
UPF1-202ENST00000594243 ACAT1P24752 427 aaKnown RBP16.07■□□□□ 0.16
UPF1-202ENST00000594243 LMO2P25791 158 aa16.07■□□□□ 0.16
UPF1-202ENST00000594243 MXI1P50539 228 aa16.07■□□□□ 0.16
UPF1-202ENST00000594243 MGAT5BQ3V5L5 792 aa16.07■□□□□ 0.16
UPF1-202ENST00000594243 PABPC1LQ4VXU2 614 aaKnown RBP16.07■□□□□ 0.16
UPF1-202ENST00000594243 CT47A1Q5JQC4 288 aaPredicted RBP16.07■□□□□ 0.16
UPF1-202ENST00000594243 ZDHHC14Q8IZN3 488 aa16.07■□□□□ 0.16
UPF1-202ENST00000594243 FBXL13Q8NEE6 735 aa16.07■□□□□ 0.16
UPF1-202ENST00000594243 TAS1R2Q8TE23 839 aa16.07■□□□□ 0.16
UPF1-202ENST00000594243 MRPL45Q9BRJ2 306 aaKnown RBP16.07■□□□□ 0.16
UPF1-202ENST00000594243 RAB20Q9NX57 234 aa16.07■□□□□ 0.16
UPF1-202ENST00000594243 ABI2Q9NYB9 513 aaPredicted RBP16.07■□□□□ 0.16
UPF1-202ENST00000594243 YIPF1Q9Y548 306 aa16.07■□□□□ 0.16
UPF1-202ENST00000594243 ASB3Q9Y575 518 aa16.07■□□□□ 0.16
UPF1-202ENST00000594243 TSC2P49815 1807 aa16.07■□□□□ 0.16
UPF1-202ENST00000594243 A8MXQ7 604 aa16.06■□□□□ 0.16
UPF1-202ENST00000594243 C2CD4DB7Z1M9 353 aa16.06■□□□□ 0.16
UPF1-202ENST00000594243 ZNF197O14709 1029 aa16.06■□□□□ 0.16
UPF1-202ENST00000594243 CCDC192P0DO97 292 aa16.06■□□□□ 0.16
UPF1-202ENST00000594243 GBP2P32456 591 aaPredicted RBP16.06■□□□□ 0.16
UPF1-202ENST00000594243 MARSP56192 900 aaKnown RBP16.06■□□□□ 0.16
UPF1-202ENST00000594243 TPD52L1Q16890 204 aaPredicted RBP16.06■□□□□ 0.16
UPF1-202ENST00000594243 WDR44Q5JSH3 913 aa16.06■□□□□ 0.16
UPF1-202ENST00000594243 CYP4A22Q5TCH4 519 aa16.06■□□□□ 0.16
UPF1-202ENST00000594243 FAM171BQ6P995 826 aa16.06■□□□□ 0.16
UPF1-202ENST00000594243 C4orf50Q6ZRC1 276 aa16.06■□□□□ 0.16
UPF1-202ENST00000594243 RNF135Q8IUD6 432 aa16.06■□□□□ 0.16
UPF1-202ENST00000594243 SPATA2LQ8IUW3 424 aaPredicted RBP16.06■□□□□ 0.16
UPF1-202ENST00000594243 LEMD2Q8NC56 503 aa16.06■□□□□ 0.16
UPF1-202ENST00000594243 SLC35C1Q96A29 364 aa16.06■□□□□ 0.16
UPF1-202ENST00000594243 FAXDC2Q96IV6 333 aa16.06■□□□□ 0.16
UPF1-202ENST00000594243 SEPT5Q99719 369 aaPredicted RBP16.06■□□□□ 0.16
UPF1-202ENST00000594243 SYT15Q9BQS2 421 aa16.06■□□□□ 0.16
UPF1-202ENST00000594243 CRISPLD1Q9H336 500 aa16.06■□□□□ 0.16
UPF1-202ENST00000594243 ABCB6Q9NP58 842 aa16.06■□□□□ 0.16
UPF1-202ENST00000594243 AVENQ9NQS1 362 aaPredicted RBP16.06■□□□□ 0.16
UPF1-202ENST00000594243 TMLHEQ9NVH6 421 aa16.06■□□□□ 0.16
UPF1-202ENST00000594243 HCFC1R1Q9NWW0 138 aa16.06■□□□□ 0.16
UPF1-202ENST00000594243 ZFP37Q9Y6Q3 630 aaPredicted RBP16.06■□□□□ 0.16
UPF1-202ENST00000594243 MYBPHLA2RUH7 354 aa16.05■□□□□ 0.16
UPF1-202ENST00000594243 RHOP08100 348 aa16.05■□□□□ 0.16
UPF1-202ENST00000594243 HAPLN1P10915 354 aaPredicted RBP16.05■□□□□ 0.16
UPF1-202ENST00000594243 TRIM21P19474 475 aaKnown RBP16.05■□□□□ 0.16
UPF1-202ENST00000594243 ERCC5P28715 1186 aaPredicted RBP16.05■□□□□ 0.16
UPF1-202ENST00000594243 CDH8P55286 799 aa16.05■□□□□ 0.16
UPF1-202ENST00000594243 NOP14P78316 857 aaKnown RBP16.05■□□□□ 0.16
UPF1-202ENST00000594243 NTHL1P78549 312 aa16.05■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms