RNA–Protein interactions for RNA: ENST00000593099.5

LIG3-216, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 4,664 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-216ENST00000593099 LGR5O75473 907 aa10.35□□□□□ -0.75
LIG3-216ENST00000593099 FBXO21O94952 628 aa10.35□□□□□ -0.75
LIG3-216ENST00000593099 FGGP02679 453 aa10.35□□□□□ -0.75
LIG3-216ENST00000593099 GJA5P36382 358 aa10.35□□□□□ -0.75
LIG3-216ENST00000593099 YWHAGP61981 247 aaKnown RBP eCLIP10.35□□□□□ -0.75
LIG3-216ENST00000593099 ECM1Q16610 540 aa10.35□□□□□ -0.75
LIG3-216ENST00000593099 SLC35G1Q2M3R5 365 aa10.35□□□□□ -0.75
LIG3-216ENST00000593099 TSHZ1Q6ZSZ6 1077 aa10.35□□□□□ -0.75
LIG3-216ENST00000593099 OTOP2Q7RTS6 562 aa10.35□□□□□ -0.75
LIG3-216ENST00000593099 CHSY1Q86X52 802 aa10.35□□□□□ -0.75
LIG3-216ENST00000593099 MCEEQ96PE7 176 aa10.35□□□□□ -0.75
LIG3-216ENST00000593099 C2CD2Q9Y426 696 aa10.35□□□□□ -0.75
LIG3-216ENST00000593099 ARIH2O95376 493 aa10.35□□□□□ -0.75
LIG3-216ENST00000593099 SNAI1O95863 264 aaPredicted RBP10.35□□□□□ -0.75
LIG3-216ENST00000593099 KRT15P19012 456 aa10.35□□□□□ -0.75
LIG3-216ENST00000593099 CA4P22748 312 aa10.35□□□□□ -0.75
LIG3-216ENST00000593099 KLK7P49862 253 aa10.35□□□□□ -0.75
LIG3-216ENST00000593099 CASP5P51878 434 aa10.35□□□□□ -0.75
LIG3-216ENST00000593099 ZNF200P98182 395 aaPredicted RBP10.35□□□□□ -0.75
LIG3-216ENST00000593099 CDR2Q01850 454 aa10.35□□□□□ -0.75
LIG3-216ENST00000593099 NAB2Q15742 525 aa10.35□□□□□ -0.75
LIG3-216ENST00000593099 ATP2A3Q93084 1043 aa10.35□□□□□ -0.75
LIG3-216ENST00000593099 SLC35C1Q96A29 364 aa10.35□□□□□ -0.75
LIG3-216ENST00000593099 CHP1Q99653 195 aa10.35□□□□□ -0.75
LIG3-216ENST00000593099 ZNF518BQ9C0D4 1074 aa10.35□□□□□ -0.75
LIG3-216ENST00000593099 MAPK13O15264 365 aa10.35□□□□□ -0.75
LIG3-216ENST00000593099 ZNF189O75820 626 aaPredicted RBP10.35□□□□□ -0.75
LIG3-216ENST00000593099 GPD1P21695 349 aa10.35□□□□□ -0.75
LIG3-216ENST00000593099 NDST1P52848 882 aa10.35□□□□□ -0.75
LIG3-216ENST00000593099 PMS1P54277 932 aaKnown RBP10.35□□□□□ -0.75
LIG3-216ENST00000593099 CREMQ03060 361 aa10.35□□□□□ -0.75
LIG3-216ENST00000593099 NPY5RQ15761 445 aa10.35□□□□□ -0.75
LIG3-216ENST00000593099 LRRIQ3A6PVS8 624 aaPredicted RBP10.34□□□□□ -0.75
LIG3-216ENST00000593099 MBL2P11226 248 aaPredicted RBP10.34□□□□□ -0.75
LIG3-216ENST00000593099 MYL4P12829 197 aa10.34□□□□□ -0.75
LIG3-216ENST00000593099 ACAT1P24752 427 aaKnown RBP10.34□□□□□ -0.75
LIG3-216ENST00000593099 ALDH3A1P30838 453 aa10.34□□□□□ -0.75
LIG3-216ENST00000593099 ARL2P36404 184 aa10.34□□□□□ -0.75
LIG3-216ENST00000593099 AVPR1AP37288 418 aa10.34□□□□□ -0.75
LIG3-216ENST00000593099 GUCY2FP51841 1108 aa10.34□□□□□ -0.75
LIG3-216ENST00000593099 RNF187Q5TA31 235 aaPredicted RBP10.34□□□□□ -0.75
LIG3-216ENST00000593099 SLC9A9Q8IVB4 645 aa10.34□□□□□ -0.75
LIG3-216ENST00000593099 TRIB2Q92519 343 aa10.34□□□□□ -0.75
LIG3-216ENST00000593099 PAWRQ96IZ0 340 aaKnown RBP10.34□□□□□ -0.75
LIG3-216ENST00000593099 FAM114A2Q9NRY5 505 aa10.34□□□□□ -0.75
LIG3-216ENST00000593099 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP10.34□□□□□ -0.75
LIG3-216ENST00000593099 IPPQ9Y573 584 aa10.34□□□□□ -0.75
LIG3-216ENST00000593099 CCDC188H7C350 402 aa10.34□□□□□ -0.75
LIG3-216ENST00000593099 CPP00450 1065 aa10.34□□□□□ -0.75
LIG3-216ENST00000593099 CLTBP09497 229 aa10.34□□□□□ -0.75
LIG3-216ENST00000593099 SLC11A2P49281 568 aa10.34□□□□□ -0.75
LIG3-216ENST00000593099 GJA9P57773 515 aa10.34□□□□□ -0.75
LIG3-216ENST00000593099 BST2Q10589 180 aaKnown RBP10.34□□□□□ -0.75
LIG3-216ENST00000593099 NR1H3Q13133 447 aa10.34□□□□□ -0.75
LIG3-216ENST00000593099 PPM1LQ5SGD2 360 aa10.34□□□□□ -0.75
LIG3-216ENST00000593099 CDKAL1Q5VV42 579 aa10.34□□□□□ -0.75
LIG3-216ENST00000593099 TATDN2Q93075 761 aa10.34□□□□□ -0.75
LIG3-216ENST00000593099 MS4A4AQ96JQ5 239 aa10.34□□□□□ -0.75
LIG3-216ENST00000593099 ARHGAP39Q9C0H5 1083 aa10.34□□□□□ -0.75
LIG3-216ENST00000593099 ELOVL4Q9GZR5 314 aa10.34□□□□□ -0.75
LIG3-216ENST00000593099 GTF2IRD1Q9UHL9 959 aa10.34□□□□□ -0.75
LIG3-216ENST00000593099 ANO9A1A5B4 782 aa10.34□□□□□ -0.75
LIG3-216ENST00000593099 F8W8V4 182 aa10.34□□□□□ -0.75
LIG3-216ENST00000593099 CRCPO75575 148 aa10.34□□□□□ -0.75
LIG3-216ENST00000593099 ITGBL1O95965 494 aaPredicted RBP10.34□□□□□ -0.75
LIG3-216ENST00000593099 HSPA1AP0DMV8 641 aaKnown RBP10.34□□□□□ -0.75
LIG3-216ENST00000593099 HSPA1BP0DMV9 641 aaKnown RBP10.34□□□□□ -0.75
LIG3-216ENST00000593099 LAG3P18627 525 aa10.34□□□□□ -0.75
LIG3-216ENST00000593099 GCNT1Q02742 428 aa10.34□□□□□ -0.75
LIG3-216ENST00000593099 GUCY2DQ02846 1103 aa10.34□□□□□ -0.75
LIG3-216ENST00000593099 ZNF235Q14590 738 aa10.34□□□□□ -0.75
LIG3-216ENST00000593099 GEN1Q17RS7 908 aa10.34□□□□□ -0.75
LIG3-216ENST00000593099 DCLRE1AQ6PJP8 1040 aa10.34□□□□□ -0.75
LIG3-216ENST00000593099 ATP6V0D2Q8N8Y2 350 aa10.34□□□□□ -0.75
LIG3-216ENST00000593099 PPM1EQ8WY54 764 aa10.34□□□□□ -0.75
LIG3-216ENST00000593099 RNPC3Q96LT9 517 aaKnown RBP10.34□□□□□ -0.75
LIG3-216ENST00000593099 DUSP9Q99956 384 aaKnown RBP10.34□□□□□ -0.75
LIG3-216ENST00000593099 KLC2Q9H0B6 622 aa10.34□□□□□ -0.75
LIG3-216ENST00000593099 NSRP1Q9H0G5 558 aaKnown RBP10.34□□□□□ -0.75
LIG3-216ENST00000593099 DYRK4Q9NR20 520 aa10.34□□□□□ -0.75
LIG3-216ENST00000593099 NOC2LQ9Y3T9 749 aaKnown RBP10.34□□□□□ -0.75
LIG3-216ENST00000593099 SCN7AQ01118 1682 aa10.34□□□□□ -0.75
LIG3-216ENST00000593099 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP10.34□□□□□ -0.75
LIG3-216ENST00000593099 CYP11B1P15538 503 aa10.34□□□□□ -0.75
LIG3-216ENST00000593099 MAP3K7CLP57077 242 aa10.34□□□□□ -0.75
LIG3-216ENST00000593099 TUSC3Q13454 348 aa10.34□□□□□ -0.75
LIG3-216ENST00000593099 ARSHQ5FYA8 562 aa10.34□□□□□ -0.75
LIG3-216ENST00000593099 FIGNQ5HY92 759 aa10.34□□□□□ -0.75
LIG3-216ENST00000593099 HEATR6Q6AI08 1181 aaKnown RBP10.34□□□□□ -0.75
LIG3-216ENST00000593099 ACAD10Q6JQN1 1059 aa10.34□□□□□ -0.75
LIG3-216ENST00000593099 BTN2A1Q7KYR7 527 aa10.34□□□□□ -0.75
LIG3-216ENST00000593099 CDKL3Q8IVW4 592 aaPredicted RBP10.34□□□□□ -0.75
LIG3-216ENST00000593099 DBF4BQ8NFT6 615 aa10.34□□□□□ -0.75
LIG3-216ENST00000593099 PDCD6IPQ8WUM4 868 aaKnown RBP10.34□□□□□ -0.75
LIG3-216ENST00000593099 CCT6BQ92526 530 aa10.34□□□□□ -0.75
LIG3-216ENST00000593099 FBXO44Q9H4M3 255 aa10.34□□□□□ -0.75
LIG3-216ENST00000593099 RNF19AQ9NV58 838 aa10.34□□□□□ -0.75
LIG3-216ENST00000593099 DDIT4Q9NX09 232 aa10.34□□□□□ -0.75
LIG3-216ENST00000593099 FNDC3AQ9Y2H6 1198 aaKnown RBP10.34□□□□□ -0.75
LIG3-216ENST00000593099 MYH3P11055 1940 aa10.34□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms