RNA–Protein interactions for RNA: ENST00000590181.5

LIG3-212, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,156 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-212ENST00000590181 INTS13Q9NVM9 706 aa11.3□□□□□ -0.6
LIG3-212ENST00000590181 SPATA6Q9NWH7 488 aaPredicted RBP11.3□□□□□ -0.6
LIG3-212ENST00000590181 HSPBP1Q9NZL4 362 aa11.3□□□□□ -0.6
LIG3-212ENST00000590181 HOOK1Q9UJC3 728 aaKnown RBP11.3□□□□□ -0.6
LIG3-212ENST00000590181 HPSEQ9Y251 543 aa11.3□□□□□ -0.6
LIG3-212ENST00000590181 NOTCH4Q99466 2003 aa11.3□□□□□ -0.6
LIG3-212ENST00000590181 GOLGA6L4A6NEF3 574 aa11.29□□□□□ -0.6
LIG3-212ENST00000590181 STAU1O95793 577 aaKnown RBP11.29□□□□□ -0.6
LIG3-212ENST00000590181 PFKFB1P16118 471 aa11.29□□□□□ -0.6
LIG3-212ENST00000590181 ATICP31939 592 aa11.29□□□□□ -0.6
LIG3-212ENST00000590181 MAGEA9P43362 315 aa11.29□□□□□ -0.6
LIG3-212ENST00000590181 ARPP19P56211 112 aa11.29□□□□□ -0.6
LIG3-212ENST00000590181 PRKCQQ04759 706 aa11.29□□□□□ -0.6
LIG3-212ENST00000590181 SPAG1Q07617 926 aa11.29□□□□□ -0.6
LIG3-212ENST00000590181 VEPH1Q14D04 833 aa11.29□□□□□ -0.6
LIG3-212ENST00000590181 PSMD6Q15008 389 aa11.29□□□□□ -0.6
LIG3-212ENST00000590181 FOXD4L5Q5VV16 416 aaPredicted RBP11.29□□□□□ -0.6
LIG3-212ENST00000590181 RNF19BQ6ZMZ0 732 aa11.29□□□□□ -0.6
LIG3-212ENST00000590181 MAML2Q8IZL2 1156 aaPredicted RBP11.29□□□□□ -0.6
LIG3-212ENST00000590181 SCFD1Q8WVM8 642 aa11.29□□□□□ -0.6
LIG3-212ENST00000590181 FOXD4L4Q8WXT5 416 aaPredicted RBP11.29□□□□□ -0.6
LIG3-212ENST00000590181 FUBP3Q96I24 572 aaKnown RBP eCLIP11.29□□□□□ -0.6
LIG3-212ENST00000590181 CBWD1Q9BRT8 395 aa11.29□□□□□ -0.6
LIG3-212ENST00000590181 OSBPL6Q9BZF3 934 aa11.29□□□□□ -0.6
LIG3-212ENST00000590181 DNAI2Q9GZS0 605 aa11.29□□□□□ -0.6
LIG3-212ENST00000590181 ZCWPW1Q9H0M4 648 aa11.29□□□□□ -0.6
LIG3-212ENST00000590181 AGPAT3Q9NRZ7 376 aa11.29□□□□□ -0.6
LIG3-212ENST00000590181 EHD2Q9NZN4 543 aa11.29□□□□□ -0.6
LIG3-212ENST00000590181 SMG5Q9UPR3 1016 aaKnown RBP11.29□□□□□ -0.6
LIG3-212ENST00000590181 TICRRQ7Z2Z1 1910 aa11.29□□□□□ -0.6
LIG3-212ENST00000590181 TISP43B9A030 160 aa11.28□□□□□ -0.6
LIG3-212ENST00000590181 IKBKBO14920 756 aa11.28□□□□□ -0.6
LIG3-212ENST00000590181 LAMTOR5O43504 91 aa11.28□□□□□ -0.6
LIG3-212ENST00000590181 ACTN4O43707 911 aaKnown RBP11.28□□□□□ -0.6
LIG3-212ENST00000590181 RHOBTB3O94955 611 aa11.28□□□□□ -0.6
LIG3-212ENST00000590181 SEC24AO95486 1093 aa11.28□□□□□ -0.6
LIG3-212ENST00000590181 IGFBP6P24592 240 aaPredicted RBP11.28□□□□□ -0.6
LIG3-212ENST00000590181 DDX6P26196 483 aaKnown RBP eCLIP11.28□□□□□ -0.6
LIG3-212ENST00000590181 RPL13P26373 211 aaKnown RBP11.28□□□□□ -0.6
LIG3-212ENST00000590181 STARD6P59095 220 aa11.28□□□□□ -0.6
LIG3-212ENST00000590181 CLDN10P78369 228 aa11.28□□□□□ -0.6
LIG3-212ENST00000590181 PKP1Q13835 747 aa11.28□□□□□ -0.6
LIG3-212ENST00000590181 KCNB1Q14721 858 aa11.28□□□□□ -0.6
LIG3-212ENST00000590181 UBXN2BQ14CS0 331 aa11.28□□□□□ -0.6
LIG3-212ENST00000590181 MLF2Q15773 248 aaPredicted RBP11.28□□□□□ -0.6
LIG3-212ENST00000590181 NFIL3Q16649 462 aa11.28□□□□□ -0.6
LIG3-212ENST00000590181 ZNF528Q3MIS6 628 aa11.28□□□□□ -0.6
LIG3-212ENST00000590181 ARHGAP15Q53QZ3 475 aa11.28□□□□□ -0.6
LIG3-212ENST00000590181 PRSS36Q5K4E3 855 aa11.28□□□□□ -0.6
LIG3-212ENST00000590181 NPAS3Q8IXF0 933 aa11.28□□□□□ -0.6
LIG3-212ENST00000590181 EFCAB13Q8IY85 973 aa11.28□□□□□ -0.6
LIG3-212ENST00000590181 ELOA2Q8IYF1 753 aaPredicted RBP11.28□□□□□ -0.6
LIG3-212ENST00000590181 C1orf127Q8N9H9 656 aa11.28□□□□□ -0.6
LIG3-212ENST00000590181 SPRYD3Q8NCJ5 442 aa11.28□□□□□ -0.6
LIG3-212ENST00000590181 DEPDC1BQ8WUY9 529 aa11.28□□□□□ -0.6
LIG3-212ENST00000590181 DNASE1L2Q92874 299 aa11.28□□□□□ -0.6
LIG3-212ENST00000590181 FGF14Q92915 247 aa11.28□□□□□ -0.6
LIG3-212ENST00000590181 PSMG2Q969U7 264 aa11.28□□□□□ -0.6
LIG3-212ENST00000590181 MSANTD3Q96H12 275 aa11.28□□□□□ -0.6
LIG3-212ENST00000590181 BCO2Q9BYV7 579 aa11.28□□□□□ -0.6
LIG3-212ENST00000590181 ZFP14Q9HCL3 533 aa11.28□□□□□ -0.6
LIG3-212ENST00000590181 PDE11AQ9HCR9 933 aa11.28□□□□□ -0.6
LIG3-212ENST00000590181 OBP2AQ9NY56 170 aa11.28□□□□□ -0.6
LIG3-212ENST00000590181 UXTQ9UBK9 157 aaPredicted RBP11.28□□□□□ -0.6
LIG3-212ENST00000590181 CDV3Q9UKY7 258 aaKnown RBP11.28□□□□□ -0.6
LIG3-212ENST00000590181 AGAP1Q9UPQ3 857 aa11.28□□□□□ -0.6
LIG3-212ENST00000590181 ZDHHC9Q9Y397 364 aa11.28□□□□□ -0.6
LIG3-212ENST00000590181 PCDHB5Q9Y5E4 795 aa11.28□□□□□ -0.6
LIG3-212ENST00000590181 CEP295Q9C0D2 2601 aa11.27□□□□□ -0.6
LIG3-212ENST00000590181 CFAP47Q6ZTR5 3102 aa11.27□□□□□ -0.6
LIG3-212ENST00000590181 KANSL1LA0AUZ9 987 aa11.27□□□□□ -0.61
LIG3-212ENST00000590181 GABRDO14764 452 aa11.27□□□□□ -0.61
LIG3-212ENST00000590181 NCAM2O15394 837 aa11.27□□□□□ -0.61
LIG3-212ENST00000590181 TGFB1I1O43294 461 aa11.27□□□□□ -0.61
LIG3-212ENST00000590181 RPN1P04843 607 aaKnown RBP11.27□□□□□ -0.61
LIG3-212ENST00000590181 ITGB3P05106 788 aa11.27□□□□□ -0.61
LIG3-212ENST00000590181 TNNI1P19237 187 aa11.27□□□□□ -0.61
LIG3-212ENST00000590181 TRIM21P19474 475 aaKnown RBP11.27□□□□□ -0.61
LIG3-212ENST00000590181 CDC25CP30307 473 aa11.27□□□□□ -0.61
LIG3-212ENST00000590181 POLR2BP30876 1174 aaKnown RBP11.27□□□□□ -0.61
LIG3-212ENST00000590181 HOXD13P35453 343 aa11.27□□□□□ -0.61
LIG3-212ENST00000590181 AFMP43652 599 aa11.27□□□□□ -0.61
LIG3-212ENST00000590181 RPL10AP62906 217 aaKnown RBP11.27□□□□□ -0.61
LIG3-212ENST00000590181 TWF1Q12792 350 aa11.27□□□□□ -0.61
LIG3-212ENST00000590181 DUSP4Q13115 394 aa11.27□□□□□ -0.61
LIG3-212ENST00000590181 CUL4BQ13620 913 aa11.27□□□□□ -0.61
LIG3-212ENST00000590181 TAF12Q16514 161 aa11.27□□□□□ -0.61
LIG3-212ENST00000590181 FOXD4L6Q3SYB3 417 aaPredicted RBP11.27□□□□□ -0.61
LIG3-212ENST00000590181 CFAP221Q4G0U5 840 aa11.27□□□□□ -0.61
LIG3-212ENST00000590181 PARM1Q6UWI2 310 aa11.27□□□□□ -0.61
LIG3-212ENST00000590181 FOXD4L3Q6VB84 417 aaPredicted RBP11.27□□□□□ -0.61
LIG3-212ENST00000590181 C4orf50Q6ZRC1 276 aa11.27□□□□□ -0.61
LIG3-212ENST00000590181 LIMS2Q7Z4I7 341 aa11.27□□□□□ -0.61
LIG3-212ENST00000590181 TAF4BQ92750 862 aa11.27□□□□□ -0.61
LIG3-212ENST00000590181 SMARCD2Q92925 531 aa11.27□□□□□ -0.61
LIG3-212ENST00000590181 IRF7Q92985 503 aa11.27□□□□□ -0.61
LIG3-212ENST00000590181 SYAP1Q96A49 352 aaPredicted RBP11.27□□□□□ -0.61
LIG3-212ENST00000590181 SAAL1Q96ER3 474 aa11.27□□□□□ -0.61
LIG3-212ENST00000590181 HPDLQ96IR7 371 aa11.27□□□□□ -0.61
LIG3-212ENST00000590181 FAXDC2Q96IV6 333 aa11.27□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms