RNA–Protein interactions for RNA: ENST00000588109.5

LIG3-210, Transcript of DNA ligase 3, humanhuman

TSL 4

Gene LIG3, Length 592 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-210ENST00000588109 BFSP1Q12934 665 aa5.74□□□□□ -1.49
LIG3-210ENST00000588109 SURF1Q15526 300 aa5.74□□□□□ -1.49
LIG3-210ENST00000588109 MAN2A1Q16706 1144 aa5.74□□□□□ -1.49
LIG3-210ENST00000588109 VWA3BQ502W6 1294 aa5.74□□□□□ -1.49
LIG3-210ENST00000588109 ZBTB41Q5SVQ8 909 aa5.74□□□□□ -1.49
LIG3-210ENST00000588109 UBE2Q1Q7Z7E8 422 aa5.74□□□□□ -1.49
LIG3-210ENST00000588109 IRF2BP1Q8IU81 584 aa5.74□□□□□ -1.49
LIG3-210ENST00000588109 BRSK2Q8IWQ3 736 aa5.74□□□□□ -1.49
LIG3-210ENST00000588109 DRC7Q8IY82 874 aa5.74□□□□□ -1.49
LIG3-210ENST00000588109 TMEM199Q8N511 208 aa5.74□□□□□ -1.49
LIG3-210ENST00000588109 RNF169Q8NCN4 708 aa5.74□□□□□ -1.49
LIG3-210ENST00000588109 ZSWIM2Q8NEG5 633 aa5.74□□□□□ -1.49
LIG3-210ENST00000588109 DBF4BQ8NFT6 615 aa5.74□□□□□ -1.49
LIG3-210ENST00000588109 TMEM174Q8WUU8 243 aa5.74□□□□□ -1.49
LIG3-210ENST00000588109 DPF3Q92784 378 aa5.74□□□□□ -1.49
LIG3-210ENST00000588109 APBB2Q92870 758 aa5.74□□□□□ -1.49
LIG3-210ENST00000588109 FBXL18Q96ME1 805 aa5.74□□□□□ -1.49
LIG3-210ENST00000588109 ADAM2Q99965 735 aa5.74□□□□□ -1.49
LIG3-210ENST00000588109 FTHL17Q9BXU8 183 aa5.74□□□□□ -1.49
LIG3-210ENST00000588109 EIF2AQ9BY44 585 aaKnown RBP5.74□□□□□ -1.49
LIG3-210ENST00000588109 OSBPL7Q9BZF2 842 aa5.74□□□□□ -1.49
LIG3-210ENST00000588109 CHRDQ9H2X0 955 aa5.74□□□□□ -1.49
LIG3-210ENST00000588109 NXF3Q9H4D5 531 aaKnown RBP5.74□□□□□ -1.49
LIG3-210ENST00000588109 TOPORSQ9NS56 1045 aaPredicted RBP5.74□□□□□ -1.49
LIG3-210ENST00000588109 FAM105AQ9NUU6 356 aa5.74□□□□□ -1.49
LIG3-210ENST00000588109 SNTG2Q9NY99 539 aa5.74□□□□□ -1.49
LIG3-210ENST00000588109 PARP2Q9UGN5 583 aa5.74□□□□□ -1.49
LIG3-210ENST00000588109 LIMA1Q9UHB6 759 aaKnown RBP5.74□□□□□ -1.49
LIG3-210ENST00000588109 CPSF3Q9UKF6 684 aaKnown RBP5.74□□□□□ -1.49
LIG3-210ENST00000588109 PCDHB2Q9Y5E7 798 aa5.74□□□□□ -1.49
LIG3-210ENST00000588109 KRBA1A5PL33 1030 aa5.73□□□□□ -1.49
LIG3-210ENST00000588109 TRIM43BA6NCK2 446 aa5.73□□□□□ -1.49
LIG3-210ENST00000588109 LGALS16A8MUM7 142 aa5.73□□□□□ -1.49
LIG3-210ENST00000588109 C9orf172C9J069 976 aa5.73□□□□□ -1.49
LIG3-210ENST00000588109 RBAK-RBAKDNI3L0D1 243 aa5.73□□□□□ -1.49
LIG3-210ENST00000588109 FAM189A1O60320 539 aa5.73□□□□□ -1.49
LIG3-210ENST00000588109 MGEA5O60502 916 aa5.73□□□□□ -1.49
LIG3-210ENST00000588109 RECQL4O94761 1208 aa5.73□□□□□ -1.49
LIG3-210ENST00000588109 ADCY5O95622 1261 aa5.73□□□□□ -1.49
LIG3-210ENST00000588109 IGHA1P01876 353 aa5.73□□□□□ -1.49
LIG3-210ENST00000588109 TNNC2P02585 160 aa5.73□□□□□ -1.49
LIG3-210ENST00000588109 TMEM191BP0C7N4 346 aa5.73□□□□□ -1.49
LIG3-210ENST00000588109 TRIM49P0CI25 452 aa5.73□□□□□ -1.49
LIG3-210ENST00000588109 TRIM49CP0CI26 452 aa5.73□□□□□ -1.49
LIG3-210ENST00000588109 CXCL8P10145 99 aa5.73□□□□□ -1.49
LIG3-210ENST00000588109 ACTN1P12814 892 aa5.73□□□□□ -1.49
LIG3-210ENST00000588109 AKAP5P24588 427 aa5.73□□□□□ -1.49
LIG3-210ENST00000588109 CDC25BP30305 580 aa5.73□□□□□ -1.49
LIG3-210ENST00000588109 GCLMP48507 274 aa5.73□□□□□ -1.49
LIG3-210ENST00000588109 ZNF75DP51815 510 aa5.73□□□□□ -1.49
LIG3-210ENST00000588109 DLG4P78352 724 aa5.73□□□□□ -1.49
LIG3-210ENST00000588109 TFAMQ00059 246 aaKnown RBP5.73□□□□□ -1.49
LIG3-210ENST00000588109 MYL7Q01449 175 aa5.73□□□□□ -1.49
LIG3-210ENST00000588109 NRG1Q02297 640 aaPredicted RBP5.73□□□□□ -1.49
LIG3-210ENST00000588109 UBXN1Q04323 297 aa5.73□□□□□ -1.49
LIG3-210ENST00000588109 CETN1Q12798 172 aa5.73□□□□□ -1.49
LIG3-210ENST00000588109 BIRC3Q13489 604 aa5.73□□□□□ -1.49
LIG3-210ENST00000588109 IKBKEQ14164 716 aa5.73□□□□□ -1.49
LIG3-210ENST00000588109 DSC3Q14574 896 aa5.73□□□□□ -1.49
LIG3-210ENST00000588109 PSMD6Q15008 389 aa5.73□□□□□ -1.49
LIG3-210ENST00000588109 ENOX2Q16206 610 aaKnown RBP5.73□□□□□ -1.49
LIG3-210ENST00000588109 PLEKHG4Q58EX7 1191 aa5.73□□□□□ -1.49
LIG3-210ENST00000588109 UBXN11Q5T124 520 aa5.73□□□□□ -1.49
LIG3-210ENST00000588109 MFSD5Q6N075 450 aa5.73□□□□□ -1.49
LIG3-210ENST00000588109 CNKSR3Q6P9H4 555 aa5.73□□□□□ -1.49
LIG3-210ENST00000588109 SARM1Q6SZW1 724 aa5.73□□□□□ -1.49
LIG3-210ENST00000588109 CRELD2Q6UXH1 353 aaPredicted RBP5.73□□□□□ -1.49
LIG3-210ENST00000588109 TRIM59Q8IWR1 403 aa5.73□□□□□ -1.49
LIG3-210ENST00000588109 TMEM192Q8IY95 271 aa5.73□□□□□ -1.49
LIG3-210ENST00000588109 RPUSD2Q8IZ73 545 aaKnown RBP5.73□□□□□ -1.49
LIG3-210ENST00000588109 TRIM43Q96BQ3 446 aaPredicted RBP5.73□□□□□ -1.49
LIG3-210ENST00000588109 PGBD4Q96DM1 585 aa5.73□□□□□ -1.49
LIG3-210ENST00000588109 MFSD14AQ96MC6 490 aa5.73□□□□□ -1.49
LIG3-210ENST00000588109 RPS6KC1Q96S38 1066 aa5.73□□□□□ -1.49
LIG3-210ENST00000588109 FAM129BQ96TA1 746 aa5.73□□□□□ -1.49
LIG3-210ENST00000588109 POP1Q99575 1024 aaKnown RBP5.73□□□□□ -1.49
LIG3-210ENST00000588109 LBHD1Q9BQE6 289 aaPredicted RBP5.73□□□□□ -1.49
LIG3-210ENST00000588109 XPO4Q9C0E2 1151 aaKnown RBP5.73□□□□□ -1.49
LIG3-210ENST00000588109 TMX1Q9H3N1 280 aa5.73□□□□□ -1.49
LIG3-210ENST00000588109 NDST4Q9H3R1 872 aa5.73□□□□□ -1.49
LIG3-210ENST00000588109 PDE11AQ9HCR9 933 aa5.73□□□□□ -1.49
LIG3-210ENST00000588109 SRA1Q9HD15 236 aaKnown RBP5.73□□□□□ -1.49
LIG3-210ENST00000588109 RGS18Q9NS28 235 aa5.73□□□□□ -1.49
LIG3-210ENST00000588109 C1orf112Q9NSG2 853 aa5.73□□□□□ -1.49
LIG3-210ENST00000588109 DZANK1Q9NVP4 752 aa5.73□□□□□ -1.49
LIG3-210ENST00000588109 R3HCC1Q9Y3T6 440 aaKnown RBP5.73□□□□□ -1.49
LIG3-210ENST00000588109 HES2Q9Y543 173 aa5.73□□□□□ -1.49
LIG3-210ENST00000588109 IPPQ9Y573 584 aa5.73□□□□□ -1.49
LIG3-210ENST00000588109 A0A0U1RQF3 1178 aa5.72□□□□□ -1.49
LIG3-210ENST00000588109 LRRIQ3A6PVS8 624 aaPredicted RBP5.72□□□□□ -1.49
LIG3-210ENST00000588109 LACTBL1A8MY62 500 aa5.72□□□□□ -1.49
LIG3-210ENST00000588109 GOLGA6L6A8MZA4 724 aa5.72□□□□□ -1.49
LIG3-210ENST00000588109 LINC01387J3KSC0 135 aa5.72□□□□□ -1.49
LIG3-210ENST00000588109 MSTNO14793 375 aa5.72□□□□□ -1.49
LIG3-210ENST00000588109 N4BP1O75113 896 aaKnown RBP5.72□□□□□ -1.49
LIG3-210ENST00000588109 CXCL10P02778 98 aa5.72□□□□□ -1.49
LIG3-210ENST00000588109 PFKMP08237 780 aa5.72□□□□□ -1.49
LIG3-210ENST00000588109 ACRP10323 421 aa5.72□□□□□ -1.49
LIG3-210ENST00000588109 CSF2RAP15509 400 aa5.72□□□□□ -1.49
LIG3-210ENST00000588109 SYN1P17600 705 aa5.72□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 48.1 ms