RNA–Protein interactions for RNA: ENST00000585941.5

LIG3-205, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,699 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-205ENST00000585941 CXCL17Q6UXB2 119 aa15.03■□□□□ -0
LIG3-205ENST00000585941 SND1Q7KZF4 910 aaKnown RBP eCLIP15.03■□□□□ -0
LIG3-205ENST00000585941 UNC93AQ86WB7 457 aa15.03■□□□□ -0
LIG3-205ENST00000585941 KATNAL2Q8IYT4 538 aa15.03■□□□□ -0
LIG3-205ENST00000585941 NIPA2Q8N8Q9 360 aa15.03■□□□□ -0
LIG3-205ENST00000585941 PPP1R13LQ8WUF5 828 aa15.03■□□□□ -0
LIG3-205ENST00000585941 IFT81Q8WYA0 676 aa15.03■□□□□ -0
LIG3-205ENST00000585941 SEC14L1Q92503 715 aa15.03■□□□□ -0
LIG3-205ENST00000585941 C18orf8Q96DM3 657 aa15.03■□□□□ -0
LIG3-205ENST00000585941 HEXIM2Q96MH2 286 aaKnown RBP15.03■□□□□ -0
LIG3-205ENST00000585941 ZMAT2Q96NC0 199 aaKnown RBP15.03■□□□□ -0
LIG3-205ENST00000585941 CFHR5Q9BXR6 569 aa15.03■□□□□ -0
LIG3-205ENST00000585941 TRIM7Q9C029 511 aa15.03■□□□□ -0
LIG3-205ENST00000585941 XPNPEP3Q9NQH7 507 aa15.03■□□□□ -0
LIG3-205ENST00000585941 CHST12Q9NRB3 414 aa15.03■□□□□ -0
LIG3-205ENST00000585941 HOMER3Q9NSC5 361 aa15.03■□□□□ -0
LIG3-205ENST00000585941 PCYOX1Q9UHG3 505 aa15.03■□□□□ -0
LIG3-205ENST00000585941 SCN1AP35498 2009 aa15.03■□□□□ -0
LIG3-205ENST00000585941 O00370 1275 aa15.02□□□□□ -0.01
LIG3-205ENST00000585941 ADAMTS4O75173 837 aa15.02□□□□□ -0.01
LIG3-205ENST00000585941 CAPN15O75808 1086 aa15.02□□□□□ -0.01
LIG3-205ENST00000585941 PGK1P00558 417 aa15.02□□□□□ -0.01
LIG3-205ENST00000585941 GBP1P32455 592 aa15.02□□□□□ -0.01
LIG3-205ENST00000585941 AARSP49588 968 aaKnown RBP eCLIP15.02□□□□□ -0.01
LIG3-205ENST00000585941 CARSP49589 748 aaKnown RBP15.02□□□□□ -0.01
LIG3-205ENST00000585941 DR1Q01658 176 aa15.02□□□□□ -0.01
LIG3-205ENST00000585941 PPP1R15BQ5SWA1 713 aa15.02□□□□□ -0.01
LIG3-205ENST00000585941 C9orf57Q5W0N0 161 aa15.02□□□□□ -0.01
LIG3-205ENST00000585941 LCLAT1Q6UWP7 414 aa15.02□□□□□ -0.01
LIG3-205ENST00000585941 PHLDB2Q86SQ0 1253 aa15.02□□□□□ -0.01
LIG3-205ENST00000585941 SERINC5Q86VE9 423 aa15.02□□□□□ -0.01
LIG3-205ENST00000585941 C12orf50Q8NA57 414 aaPredicted RBP15.02□□□□□ -0.01
LIG3-205ENST00000585941 PCSK9Q8NBP7 692 aaKnown RBP15.02□□□□□ -0.01
LIG3-205ENST00000585941 FNIP1Q8TF40 1166 aa15.02□□□□□ -0.01
LIG3-205ENST00000585941 CASKIN2Q8WXE0 1202 aa15.02□□□□□ -0.01
LIG3-205ENST00000585941 DDX27Q96GQ7 796 aaKnown RBP15.02□□□□□ -0.01
LIG3-205ENST00000585941 SYNCQ9H7C4 482 aa15.02□□□□□ -0.01
LIG3-205ENST00000585941 HPCAL4Q9UM19 191 aa15.02□□□□□ -0.01
LIG3-205ENST00000585941 SMIM28A0A1B0GU29 152 aa15.01□□□□□ -0.01
LIG3-205ENST00000585941 SIGLEC16A6NMB1 481 aa15.01□□□□□ -0.01
LIG3-205ENST00000585941 PODXLO00592 558 aa15.01□□□□□ -0.01
LIG3-205ENST00000585941 TOMM70O94826 608 aa15.01□□□□□ -0.01
LIG3-205ENST00000585941 MICAL2O94851 1124 aa15.01□□□□□ -0.01
LIG3-205ENST00000585941 GABRB2P47870 512 aa15.01□□□□□ -0.01
LIG3-205ENST00000585941 FNTAP49354 379 aa15.01□□□□□ -0.01
LIG3-205ENST00000585941 DRG2P55039 364 aaKnown RBP15.01□□□□□ -0.01
LIG3-205ENST00000585941 SNX16P57768 344 aa15.01□□□□□ -0.01
LIG3-205ENST00000585941 TWF2Q6IBS0 349 aaKnown RBP15.01□□□□□ -0.01
LIG3-205ENST00000585941 LLGL2Q6P1M3 1020 aa15.01□□□□□ -0.01
LIG3-205ENST00000585941 FAM228AQ86W67 206 aa15.01□□□□□ -0.01
LIG3-205ENST00000585941 GSPT2Q8IYD1 628 aaKnown RBP15.01□□□□□ -0.01
LIG3-205ENST00000585941 MREGQ8N565 214 aa15.01□□□□□ -0.01
LIG3-205ENST00000585941 PRELID2Q8N945 189 aa15.01□□□□□ -0.01
LIG3-205ENST00000585941 EXD1Q8NHP7 514 aa15.01□□□□□ -0.01
LIG3-205ENST00000585941 MAGOHBQ96A72 148 aaKnown RBP15.01□□□□□ -0.01
LIG3-205ENST00000585941 TWNKQ96RR1 684 aa15.01□□□□□ -0.01
LIG3-205ENST00000585941 TUBGCP4Q9UGJ1 667 aa15.01□□□□□ -0.01
LIG3-205ENST00000585941 PARP2Q9UGN5 583 aa15.01□□□□□ -0.01
LIG3-205ENST00000585941 NFU1Q9UMS0 254 aa15.01□□□□□ -0.01
LIG3-205ENST00000585941 HES2Q9Y543 173 aa15.01□□□□□ -0.01
LIG3-205ENST00000585941 IPPQ9Y573 584 aa15.01□□□□□ -0.01
LIG3-205ENST00000585941 SNX9Q9Y5X1 595 aa15.01□□□□□ -0.01
LIG3-205ENST00000585941 CDY2AQ9Y6F7 541 aa15.01□□□□□ -0.01
LIG3-205ENST00000585941 M0QYV0 167 aa15□□□□□ -0.01
LIG3-205ENST00000585941 PIRO00625 290 aa15□□□□□ -0.01
LIG3-205ENST00000585941 TTI1O43156 1089 aa15□□□□□ -0.01
LIG3-205ENST00000585941 RPS6KA5O75582 802 aa15□□□□□ -0.01
LIG3-205ENST00000585941 CABYRO75952 493 aa15□□□□□ -0.01
LIG3-205ENST00000585941 SETSIPP0DME0 302 aa15□□□□□ -0.01
LIG3-205ENST00000585941 FAM193AP78312 1265 aa15□□□□□ -0.01
LIG3-205ENST00000585941 HLTFQ14527 1009 aaKnown RBP eCLIP15□□□□□ -0.01
LIG3-205ENST00000585941 DEFB115Q30KQ5 88 aa15□□□□□ -0.01
LIG3-205ENST00000585941 PTPN20Q4JDL3 420 aa15□□□□□ -0.01
LIG3-205ENST00000585941 FBXO47Q5MNV8 452 aa15□□□□□ -0.01
LIG3-205ENST00000585941 ALS2CLQ60I27 953 aa15□□□□□ -0.01
LIG3-205ENST00000585941 GDF6Q6KF10 455 aaPredicted RBP15□□□□□ -0.01
LIG3-205ENST00000585941 CPNE8Q86YQ8 564 aa15□□□□□ -0.01
LIG3-205ENST00000585941 KLHDC9Q8NEP7 349 aa15□□□□□ -0.01
LIG3-205ENST00000585941 IPO4Q8TEX9 1081 aaKnown RBP15□□□□□ -0.01
LIG3-205ENST00000585941 RBM41Q96IZ5 413 aaKnown RBP15□□□□□ -0.01
LIG3-205ENST00000585941 CAPNS2Q96L46 248 aa15□□□□□ -0.01
LIG3-205ENST00000585941 MCEEQ96PE7 176 aa15□□□□□ -0.01
LIG3-205ENST00000585941 HINFPQ9BQA5 517 aa15□□□□□ -0.01
LIG3-205ENST00000585941 APOL6Q9BWW8 343 aa15□□□□□ -0.01
LIG3-205ENST00000585941 GDAP2Q9NXN4 497 aa15□□□□□ -0.01
LIG3-205ENST00000585941 HMGXB4Q9UGU5 601 aa15□□□□□ -0.01
LIG3-205ENST00000585941 NR2E1Q9Y466 385 aa15□□□□□ -0.01
LIG3-205ENST00000585941 ZSCAN5CA6NGD5 496 aaPredicted RBP15□□□□□ -0.01
LIG3-205ENST00000585941 GPR182O15218 404 aa15□□□□□ -0.01
LIG3-205ENST00000585941 GNRH1P01148 92 aa15□□□□□ -0.01
LIG3-205ENST00000585941 FAM163BP0C2L3 166 aa15□□□□□ -0.01
LIG3-205ENST00000585941 KRT3P12035 628 aa15□□□□□ -0.01
LIG3-205ENST00000585941 PRKAR2AP13861 404 aaKnown RBP15□□□□□ -0.01
LIG3-205ENST00000585941 AKAP5P24588 427 aa15□□□□□ -0.01
LIG3-205ENST00000585941 GPD2P43304 727 aa15□□□□□ -0.01
LIG3-205ENST00000585941 COPS2P61201 443 aa15□□□□□ -0.01
LIG3-205ENST00000585941 PSMC1P62191 440 aaKnown RBP15□□□□□ -0.01
LIG3-205ENST00000585941 RPL7AP62424 266 aaKnown RBP15□□□□□ -0.01
LIG3-205ENST00000585941 GABPB1Q06547 395 aaPredicted RBP15□□□□□ -0.01
LIG3-205ENST00000585941 ACAP1Q15027 740 aa15□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms