RNA–Protein interactions for RNA: ENST00000585799.5

SMARCA4-208, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4, humanhuman

TSL 2

Gene SMARCA4, Length 3,842 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA4-208ENST00000585799 ZC3H15Q8WU90 426 aaKnown RBP13.14□□□□□ -0.31
SMARCA4-208ENST00000585799 HAPLN2Q9GZV7 340 aa13.14□□□□□ -0.31
SMARCA4-208ENST00000585799 MAD1L1Q9Y6D9 718 aa13.14□□□□□ -0.31
SMARCA4-208ENST00000585799 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP13.14□□□□□ -0.31
SMARCA4-208ENST00000585799 A6NJR5 290 aa13.14□□□□□ -0.31
SMARCA4-208ENST00000585799 MSCO60682 206 aa13.14□□□□□ -0.31
SMARCA4-208ENST00000585799 HUS1O60921 280 aa13.14□□□□□ -0.31
SMARCA4-208ENST00000585799 CYP1A2P05177 515 aa13.14□□□□□ -0.31
SMARCA4-208ENST00000585799 EDN1P05305 212 aa13.14□□□□□ -0.31
SMARCA4-208ENST00000585799 ZSCAN5DPP0CG00 497 aa13.14□□□□□ -0.31
SMARCA4-208ENST00000585799 MAN1A1P33908 653 aa13.14□□□□□ -0.31
SMARCA4-208ENST00000585799 MAMLD1Q13495 774 aa13.14□□□□□ -0.31
SMARCA4-208ENST00000585799 CRELD2Q6UXH1 353 aaPredicted RBP13.14□□□□□ -0.31
SMARCA4-208ENST00000585799 DSTYKQ6XUX3 929 aa13.14□□□□□ -0.31
SMARCA4-208ENST00000585799 TAOK1Q7L7X3 1001 aa13.14□□□□□ -0.31
SMARCA4-208ENST00000585799 EFCAB13Q8IY85 973 aa13.14□□□□□ -0.31
SMARCA4-208ENST00000585799 SRRM1Q8IYB3 904 aaKnown RBP13.14□□□□□ -0.31
SMARCA4-208ENST00000585799 C12orf29Q8N999 325 aa13.14□□□□□ -0.31
SMARCA4-208ENST00000585799 VTA1Q9NP79 307 aa13.14□□□□□ -0.31
SMARCA4-208ENST00000585799 COQ4Q9Y3A0 265 aa13.14□□□□□ -0.31
SMARCA4-208ENST00000585799 SDC4P31431 198 aa13.13□□□□□ -0.31
SMARCA4-208ENST00000585799 STX2P32856 288 aa13.13□□□□□ -0.31
SMARCA4-208ENST00000585799 SCARA3Q6AZY7 606 aa13.13□□□□□ -0.31
SMARCA4-208ENST00000585799 CCNYQ8ND76 341 aa13.13□□□□□ -0.31
SMARCA4-208ENST00000585799 SNF8Q96H20 258 aa13.13□□□□□ -0.31
SMARCA4-208ENST00000585799 FBXL18Q96ME1 805 aa13.13□□□□□ -0.31
SMARCA4-208ENST00000585799 DHX35Q9H5Z1 703 aaKnown RBP13.13□□□□□ -0.31
SMARCA4-208ENST00000585799 SAMD15Q9P1V8 674 aa13.13□□□□□ -0.31
SMARCA4-208ENST00000585799 EXOC1LA0A1B0GW35 172 aa13.13□□□□□ -0.31
SMARCA4-208ENST00000585799 STRNO43815 780 aa13.13□□□□□ -0.31
SMARCA4-208ENST00000585799 RFC1P35251 1148 aaPredicted RBP13.13□□□□□ -0.31
SMARCA4-208ENST00000585799 TTMPQ5BVD1 217 aa13.13□□□□□ -0.31
SMARCA4-208ENST00000585799 EPS8L3Q8TE67 593 aaKnown RBP13.13□□□□□ -0.31
SMARCA4-208ENST00000585799 LRRN4Q8WUT4 740 aa13.13□□□□□ -0.31
SMARCA4-208ENST00000585799 CAVIN3Q969G5 261 aa13.13□□□□□ -0.31
SMARCA4-208ENST00000585799 XPOTO43592 962 aaKnown RBP13.13□□□□□ -0.31
SMARCA4-208ENST00000585799 CAND2O75155 1236 aa13.13□□□□□ -0.31
SMARCA4-208ENST00000585799 ZNF200P98182 395 aaPredicted RBP13.13□□□□□ -0.31
SMARCA4-208ENST00000585799 TLK2Q86UE8 772 aa13.13□□□□□ -0.31
SMARCA4-208ENST00000585799 MAP7D3Q8IWC1 876 aa13.13□□□□□ -0.31
SMARCA4-208ENST00000585799 TFAP2BQ92481 460 aa13.13□□□□□ -0.31
SMARCA4-208ENST00000585799 TMEM121Q9BTD3 319 aa13.13□□□□□ -0.31
SMARCA4-208ENST00000585799 ASNSD1Q9NWL6 643 aa13.13□□□□□ -0.31
SMARCA4-208ENST00000585799 RRP15Q9Y3B9 282 aaKnown RBP13.13□□□□□ -0.31
SMARCA4-208ENST00000585799 TIMM13Q9Y5L4 95 aaPredicted RBP13.13□□□□□ -0.31
SMARCA4-208ENST00000585799 STBD1O95210 358 aa13.12□□□□□ -0.31
SMARCA4-208ENST00000585799 BYSLQ13895 437 aaKnown RBP13.12□□□□□ -0.31
SMARCA4-208ENST00000585799 ZBED8Q8IZ13 594 aa13.12□□□□□ -0.31
SMARCA4-208ENST00000585799 IQCGQ9H095 443 aaKnown RBP13.12□□□□□ -0.31
SMARCA4-208ENST00000585799 TJP2Q9UDY2 1190 aa13.12□□□□□ -0.31
SMARCA4-208ENST00000585799 R3HDM2Q9Y2K5 976 aaKnown RBP13.12□□□□□ -0.31
SMARCA4-208ENST00000585799 LRRC37AA6NMS7 1700 aa13.12□□□□□ -0.31
SMARCA4-208ENST00000585799 WDR91A4D1P6 747 aa13.12□□□□□ -0.31
SMARCA4-208ENST00000585799 ETS1P14921 441 aa13.12□□□□□ -0.31
SMARCA4-208ENST00000585799 GBP1P32455 592 aa13.12□□□□□ -0.31
SMARCA4-208ENST00000585799 GJA5P36382 358 aa13.12□□□□□ -0.31
SMARCA4-208ENST00000585799 LMNB2Q03252 620 aa13.12□□□□□ -0.31
SMARCA4-208ENST00000585799 FAXCQ5TGI0 409 aa13.12□□□□□ -0.31
SMARCA4-208ENST00000585799 SLFN11Q7Z7L1 901 aa13.12□□□□□ -0.31
SMARCA4-208ENST00000585799 TMEM176AQ96HP8 235 aa13.12□□□□□ -0.31
SMARCA4-208ENST00000585799 DDX23Q9BUQ8 820 aaKnown RBP13.12□□□□□ -0.31
SMARCA4-208ENST00000585799 HOMER3Q9NSC5 361 aa13.12□□□□□ -0.31
SMARCA4-208ENST00000585799 AGPSO00116 658 aa13.12□□□□□ -0.31
SMARCA4-208ENST00000585799 ACAT1P24752 427 aaKnown RBP13.12□□□□□ -0.31
SMARCA4-208ENST00000585799 SNX16P57768 344 aa13.12□□□□□ -0.31
SMARCA4-208ENST00000585799 PPP2R2AP63151 447 aa13.12□□□□□ -0.31
SMARCA4-208ENST00000585799 PDIA2Q13087 525 aaKnown RBP13.12□□□□□ -0.31
SMARCA4-208ENST00000585799 TTC27Q6P3X3 843 aa13.12□□□□□ -0.31
SMARCA4-208ENST00000585799 TMC3Q7Z5M5 1100 aa13.12□□□□□ -0.31
SMARCA4-208ENST00000585799 RCOR2Q8IZ40 523 aa13.12□□□□□ -0.31
SMARCA4-208ENST00000585799 CCDC63Q8NA47 563 aa13.12□□□□□ -0.31
SMARCA4-208ENST00000585799 KRT7P08729 469 aa13.11□□□□□ -0.31
SMARCA4-208ENST00000585799 SMPD1P17405 629 aa13.11□□□□□ -0.31
SMARCA4-208ENST00000585799 NME3Q13232 169 aa13.11□□□□□ -0.31
SMARCA4-208ENST00000585799 PPP1R2P3Q6NXS1 205 aa13.11□□□□□ -0.31
SMARCA4-208ENST00000585799 NOTUMQ6P988 496 aa13.11□□□□□ -0.31
SMARCA4-208ENST00000585799 MTHFD1LQ6UB35 978 aa13.11□□□□□ -0.31
SMARCA4-208ENST00000585799 HACE1Q8IYU2 909 aa13.11□□□□□ -0.31
SMARCA4-208ENST00000585799 ARHGEF2Q92974 986 aaKnown RBP13.11□□□□□ -0.31
SMARCA4-208ENST00000585799 RBM15Q96T37 977 aaKnown RBP eCLIP13.11□□□□□ -0.312e-6■■■■□ 21.5
SMARCA4-208ENST00000585799 TSPAN16Q9UKR8 245 aa13.11□□□□□ -0.31
SMARCA4-208ENST00000585799 TNFSF13BQ9Y275 285 aa13.11□□□□□ -0.31
SMARCA4-208ENST00000585799 STXBP5LQ9Y2K9 1186 aa13.11□□□□□ -0.31
SMARCA4-208ENST00000585799 ZBED1O96006 694 aa13.11□□□□□ -0.31
SMARCA4-208ENST00000585799 SHBGP04278 402 aa13.11□□□□□ -0.31
SMARCA4-208ENST00000585799 ATP2A2P16615 1042 aaKnown RBP13.11□□□□□ -0.31
SMARCA4-208ENST00000585799 EIF3BP55884 814 aaKnown RBP13.11□□□□□ -0.31
SMARCA4-208ENST00000585799 EIF3EP60228 445 aaKnown RBP13.11□□□□□ -0.31
SMARCA4-208ENST00000585799 C1QBPQ07021 282 aaKnown RBP13.11□□□□□ -0.31
SMARCA4-208ENST00000585799 PIGHQ14442 188 aaPredicted RBP13.11□□□□□ -0.31
SMARCA4-208ENST00000585799 RSPH3Q86UC2 560 aa13.11□□□□□ -0.31
SMARCA4-208ENST00000585799 SIX6OS1Q8N1H7 587 aa13.11□□□□□ -0.31
SMARCA4-208ENST00000585799 C1orf127Q8N9H9 656 aa13.11□□□□□ -0.31
SMARCA4-208ENST00000585799 JOSD2Q8TAC2 188 aa13.11□□□□□ -0.31
SMARCA4-208ENST00000585799 RUBCNQ92622 972 aa13.11□□□□□ -0.31
SMARCA4-208ENST00000585799 GOLGA2P5Q9HBQ8 144 aa13.11□□□□□ -0.31
SMARCA4-208ENST00000585799 STAU2Q9NUL3 570 aaKnown RBP eCLIP13.11□□□□□ -0.31
SMARCA4-208ENST00000585799 CPSF3Q9UKF6 684 aaKnown RBP13.11□□□□□ -0.31
SMARCA4-208ENST00000585799 MRPL42Q9Y6G3 142 aaKnown RBP13.11□□□□□ -0.31
SMARCA4-208ENST00000585799 NRXN2Q9P2S2 1712 aa13.11□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms