RNA–Protein interactions for RNA: ENST00000580003.1

SS18-214, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 609 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-214ENST00000580003 FOXI1Q12951 378 aa7.95□□□□□ -1.14
SS18-214ENST00000580003 ERCC6LQ2NKX8 1250 aa7.95□□□□□ -1.14
SS18-214ENST00000580003 PCSK4Q6UW60 755 aa7.95□□□□□ -1.14
SS18-214ENST00000580003 FAM9AQ8IZU1 332 aaPredicted RBP7.95□□□□□ -1.14
SS18-214ENST00000580003 B3GALNT2Q8NCR0 500 aa7.95□□□□□ -1.14
SS18-214ENST00000580003 TOR1AIP2Q8NFQ8 470 aa7.95□□□□□ -1.14
SS18-214ENST00000580003 FBXO41Q8TF61 875 aa7.95□□□□□ -1.14
SS18-214ENST00000580003 MRGPRX1Q96LB2 322 aa7.95□□□□□ -1.14
SS18-214ENST00000580003 AGAP2Q99490 1192 aa7.95□□□□□ -1.14
SS18-214ENST00000580003 HEPHQ9BQS7 1158 aa7.95□□□□□ -1.14
SS18-214ENST00000580003 SMOC2Q9H3U7 446 aa7.95□□□□□ -1.14
SS18-214ENST00000580003 YY2O15391 372 aa7.94□□□□□ -1.14
SS18-214ENST00000580003 PHGDHO43175 533 aaKnown RBP7.94□□□□□ -1.14
SS18-214ENST00000580003 DNAJB5O75953 348 aa7.94□□□□□ -1.14
SS18-214ENST00000580003 THP07101 528 aa7.94□□□□□ -1.14
SS18-214ENST00000580003 GCLCP48506 637 aaPredicted RBP7.94□□□□□ -1.14
SS18-214ENST00000580003 PPP4R4Q6NUP7 873 aa7.94□□□□□ -1.14
SS18-214ENST00000580003 VWA1Q6PCB0 445 aa7.94□□□□□ -1.14
SS18-214ENST00000580003 MAEAQ7L5Y9 396 aa7.94□□□□□ -1.14
SS18-214ENST00000580003 FBXL20Q96IG2 436 aa7.94□□□□□ -1.14
SS18-214ENST00000580003 NT5C1BQ96P26 610 aa7.94□□□□□ -1.14
SS18-214ENST00000580003 MOGAT1Q96PD6 335 aa7.94□□□□□ -1.14
SS18-214ENST00000580003 SLITRK6Q9H5Y7 841 aa7.94□□□□□ -1.14
SS18-214ENST00000580003 ZMAT3Q9HA38 289 aaKnown RBP7.94□□□□□ -1.14
SS18-214ENST00000580003 HESX1Q9UBX0 185 aa7.94□□□□□ -1.14
SS18-214ENST00000580003 MED16Q9Y2X0 877 aa7.94□□□□□ -1.14
SS18-214ENST00000580003 MYO1CO00159 1063 aa7.93□□□□□ -1.14
SS18-214ENST00000580003 KITP10721 976 aa7.93□□□□□ -1.14
SS18-214ENST00000580003 PPP3CBP16298 524 aa7.93□□□□□ -1.14
SS18-214ENST00000580003 ADRA1BP35368 520 aa7.93□□□□□ -1.14
SS18-214ENST00000580003 FOLR3P41439 243 aa7.93□□□□□ -1.14
SS18-214ENST00000580003 LLGL1Q15334 1064 aa7.93□□□□□ -1.14
SS18-214ENST00000580003 LONRF3Q496Y0 759 aa7.93□□□□□ -1.14
SS18-214ENST00000580003 LAYNQ6UX15 382 aa7.93□□□□□ -1.14
SS18-214ENST00000580003 ZNF783Q6ZMS7 281 aa7.93□□□□□ -1.14
SS18-214ENST00000580003 C14orf80Q86SX3 495 aa7.93□□□□□ -1.14
SS18-214ENST00000580003 KIAA0319LQ8IZA0 1049 aa7.93□□□□□ -1.14
SS18-214ENST00000580003 GPR150Q8NGU9 434 aa7.93□□□□□ -1.14
SS18-214ENST00000580003 TTC8Q8TAM2 541 aa7.93□□□□□ -1.14
SS18-214ENST00000580003 ACTRT2Q8TDY3 377 aa7.93□□□□□ -1.14
SS18-214ENST00000580003 LPIN2Q92539 896 aa7.93□□□□□ -1.14
SS18-214ENST00000580003 PGBD1Q96JS3 809 aa7.93□□□□□ -1.14
SS18-214ENST00000580003 SLC46A1Q96NT5 459 aa7.93□□□□□ -1.14
SS18-214ENST00000580003 OSBPL9Q96SU4 736 aa7.93□□□□□ -1.14
SS18-214ENST00000580003 P2RX7Q99572 595 aaKnown RBP7.93□□□□□ -1.14
SS18-214ENST00000580003 PROM1O43490 865 aa7.92□□□□□ -1.14
SS18-214ENST00000580003 NPR1P16066 1061 aa7.92□□□□□ -1.14
SS18-214ENST00000580003 CD6P30203 668 aa7.92□□□□□ -1.14
SS18-214ENST00000580003 CXCR5P32302 372 aa7.92□□□□□ -1.14
SS18-214ENST00000580003 ITIH3Q06033 890 aa7.92□□□□□ -1.14
SS18-214ENST00000580003 KBTBD7Q8WVZ9 684 aa7.92□□□□□ -1.14
SS18-214ENST00000580003 SPATA5L1Q9BVQ7 753 aa7.92□□□□□ -1.14
SS18-214ENST00000580003 TPSD1Q9BZJ3 242 aa7.92□□□□□ -1.14
SS18-214ENST00000580003 TTYH3Q9C0H2 523 aa7.92□□□□□ -1.14
SS18-214ENST00000580003 DDX20Q9UHI6 824 aaKnown RBP7.92□□□□□ -1.14
SS18-214ENST00000580003 ZBTB32Q9Y2Y4 487 aaPredicted RBP7.92□□□□□ -1.14
SS18-214ENST00000580003 TMX2Q9Y320 296 aa7.92□□□□□ -1.14
SS18-214ENST00000580003 CFAP69A5D8W1 941 aa7.91□□□□□ -1.14
SS18-214ENST00000580003 ORC4O43929 436 aa7.91□□□□□ -1.14
SS18-214ENST00000580003 ATXN1LP0C7T5 689 aaKnown RBP7.91□□□□□ -1.14
SS18-214ENST00000580003 PLA2G5P39877 138 aa7.91□□□□□ -1.14
SS18-214ENST00000580003 TOB1P50616 345 aaPredicted RBP7.91□□□□□ -1.14
SS18-214ENST00000580003 NXPH1P58417 271 aa7.91□□□□□ -1.14
SS18-214ENST00000580003 SATB1Q01826 763 aa7.91□□□□□ -1.14
SS18-214ENST00000580003 IQCB1Q15051 598 aa7.91□□□□□ -1.14
SS18-214ENST00000580003 CNN3Q15417 329 aaKnown RBP7.91□□□□□ -1.14
SS18-214ENST00000580003 RBM20Q5T481 1227 aaKnown RBP7.91□□□□□ -1.14
SS18-214ENST00000580003 TSHZ1Q6ZSZ6 1077 aa7.91□□□□□ -1.14
SS18-214ENST00000580003 SRGAP1Q7Z6B7 1085 aa7.91□□□□□ -1.14
SS18-214ENST00000580003 OR6B3Q8NGW1 331 aa7.91□□□□□ -1.14
SS18-214ENST00000580003 TRIM54Q9BYV2 358 aa7.91□□□□□ -1.14
SS18-214ENST00000580003 PRDM11Q9NQV5 511 aa7.91□□□□□ -1.14
SS18-214ENST00000580003 CAMSAP3Q9P1Y5 1249 aaPredicted RBP7.91□□□□□ -1.14
SS18-214ENST00000580003 L1RE1Q9UN81 338 aa7.91□□□□□ -1.14
SS18-214ENST00000580003 FRMPD2Q68DX3 1309 aaPredicted RBP7.91□□□□□ -1.14
SS18-214ENST00000580003 LMNAP02545 664 aaKnown RBP7.9□□□□□ -1.14
SS18-214ENST00000580003 SLC7A1P30825 629 aa7.9□□□□□ -1.14
SS18-214ENST00000580003 CACNB3P54284 484 aa7.9□□□□□ -1.14
SS18-214ENST00000580003 BOP1Q14137 746 aaKnown RBP7.9□□□□□ -1.14
SS18-214ENST00000580003 NBPF8Q3BBV2 869 aa7.9□□□□□ -1.14
SS18-214ENST00000580003 LMBRD2Q68DH5 695 aaPredicted RBP7.9□□□□□ -1.14
SS18-214ENST00000580003 OLFML1Q6UWY5 402 aa7.9□□□□□ -1.14
SS18-214ENST00000580003 TMEM108Q6UXF1 575 aa7.9□□□□□ -1.14
SS18-214ENST00000580003 CCDC149Q6ZUS6 474 aa7.9□□□□□ -1.14
SS18-214ENST00000580003 MYCBPAPQ8TBZ2 947 aa7.9□□□□□ -1.14
SS18-214ENST00000580003 NELL2Q99435 816 aa7.9□□□□□ -1.14
SS18-214ENST00000580003 KRTAP4-5Q9BYR2 181 aa7.9□□□□□ -1.14
SS18-214ENST00000580003 OBP2AQ9NY56 170 aa7.9□□□□□ -1.14
SS18-214ENST00000580003 XPR1Q9UBH6 696 aa7.9□□□□□ -1.14
SS18-214ENST00000580003 ZNHIT2Q9UHR6 403 aa7.9□□□□□ -1.14
SS18-214ENST00000580003 MPPED1O15442 326 aa7.89□□□□□ -1.15
SS18-214ENST00000580003 TBC1D4O60343 1298 aa7.89□□□□□ -1.15
SS18-214ENST00000580003 CHRM2P08172 466 aa7.89□□□□□ -1.15
SS18-214ENST00000580003 VIPR2P41587 438 aa7.89□□□□□ -1.15
SS18-214ENST00000580003 UCP3P55916 312 aa7.89□□□□□ -1.15
SS18-214ENST00000580003 INHBEP58166 350 aa7.89□□□□□ -1.15
SS18-214ENST00000580003 LOXL3P58215 753 aa7.89□□□□□ -1.15
SS18-214ENST00000580003 GBX1Q14549 363 aa7.89□□□□□ -1.15
SS18-214ENST00000580003 GRM3Q14832 879 aa7.89□□□□□ -1.15
SS18-214ENST00000580003 ZNF169Q14929 603 aaPredicted RBP7.89□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 16 ms