RNA–Protein interactions for RNA: ENST00000580002.5

SHMT1-207, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,759 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-207ENST00000580002 M0QZQ0 153 aa26.73■■□□□ 1.87
SHMT1-207ENST00000580002 GABRDO14764 452 aa26.73■■□□□ 1.87
SHMT1-207ENST00000580002 EFCAB14O75071 495 aa26.73■■□□□ 1.87
SHMT1-207ENST00000580002 CCDC175P0C221 793 aa26.73■■□□□ 1.87
SHMT1-207ENST00000580002 MAGEA1P43355 309 aa26.73■■□□□ 1.87
SHMT1-207ENST00000580002 PSMC1P62191 440 aaKnown RBP26.73■■□□□ 1.87
SHMT1-207ENST00000580002 SUSD3Q96L08 255 aa26.73■■□□□ 1.87
SHMT1-207ENST00000580002 GPR62Q9BZJ7 368 aa26.73■■□□□ 1.87
SHMT1-207ENST00000580002 TADA2AO75478 443 aa26.72■■□□□ 1.87
SHMT1-207ENST00000580002 ARHGAP25P42331 645 aa26.72■■□□□ 1.87
SHMT1-207ENST00000580002 SPA17Q15506 151 aa26.72■■□□□ 1.87
SHMT1-207ENST00000580002 LZTFL1Q9NQ48 299 aa26.72■■□□□ 1.87
SHMT1-207ENST00000580002 FAM49BQ9NUQ9 324 aa26.72■■□□□ 1.87
SHMT1-207ENST00000580002 GTF3C5Q9Y5Q8 519 aaPredicted RBP26.72■■□□□ 1.87
SHMT1-207ENST00000580002 PAEPP09466 180 aa26.71■■□□□ 1.87
SHMT1-207ENST00000580002 DENND1BQ6P3S1 775 aa26.71■■□□□ 1.87
SHMT1-207ENST00000580002 TAS1R1Q7RTX1 841 aa26.71■■□□□ 1.87
SHMT1-207ENST00000580002 TNS4Q8IZW8 715 aa26.71■■□□□ 1.87
SHMT1-207ENST00000580002 CPA5Q8WXQ8 436 aa26.71■■□□□ 1.87
SHMT1-207ENST00000580002 DDX43Q9NXZ2 648 aaKnown RBP26.71■■□□□ 1.87
SHMT1-207ENST00000580002 MRPL42Q9Y6G3 142 aaKnown RBP26.71■■□□□ 1.87
SHMT1-207ENST00000580002 TMEM189-UBE2V1I3L0A0 370 aa26.71■■□□□ 1.87
SHMT1-207ENST00000580002 TKTP29401 623 aaKnown RBP26.71■■□□□ 1.87
SHMT1-207ENST00000580002 C2CD6Q53TS8 623 aa26.71■■□□□ 1.87
SHMT1-207ENST00000580002 VPS36Q86VN1 386 aa26.71■■□□□ 1.87
SHMT1-207ENST00000580002 WDTC1Q8N5D0 677 aa26.71■■□□□ 1.87
SHMT1-207ENST00000580002 TMEM209Q96SK2 561 aa26.71■■□□□ 1.87
SHMT1-207ENST00000580002 IRX2Q9BZI1 471 aaPredicted RBP26.71■■□□□ 1.87
SHMT1-207ENST00000580002 RNF216Q9NWF9 866 aaPredicted RBP26.71■■□□□ 1.87
SHMT1-207ENST00000580002 ADAM28Q9UKQ2 775 aa26.71■■□□□ 1.87
SHMT1-207ENST00000580002 BTG3Q14201 252 aaPredicted RBP26.7■■□□□ 1.86
SHMT1-207ENST00000580002 C9orf50Q5SZB4 431 aa26.7■■□□□ 1.86
SHMT1-207ENST00000580002 PPP1R26Q5T8A7 1209 aaPredicted RBP26.7■■□□□ 1.86
SHMT1-207ENST00000580002 UNC93AQ86WB7 457 aa26.7■■□□□ 1.86
SHMT1-207ENST00000580002 HERVK_113Q902F9 699 aa26.7■■□□□ 1.86
SHMT1-207ENST00000580002 CHORDC1Q9UHD1 332 aaPredicted RBP26.7■■□□□ 1.86
SHMT1-207ENST00000580002 CEP290O15078 2479 aa26.69■■□□□ 1.86
SHMT1-207ENST00000580002 KRT83P78385 493 aa26.69■■□□□ 1.86
SHMT1-207ENST00000580002 CLEC16AQ2KHT3 1053 aa26.69■■□□□ 1.86
SHMT1-207ENST00000580002 NAA35Q5VZE5 725 aa26.69■■□□□ 1.86
SHMT1-207ENST00000580002 PSRC1Q6PGN9 363 aaPredicted RBP26.69■■□□□ 1.86
SHMT1-207ENST00000580002 KIAA1328Q86T90 577 aa26.69■■□□□ 1.86
SHMT1-207ENST00000580002 UBA3Q8TBC4 463 aa26.69■■□□□ 1.86
SHMT1-207ENST00000580002 YME1L1Q96TA2 773 aa26.69■■□□□ 1.86
SHMT1-207ENST00000580002 LBHD1Q9BQE6 289 aaPredicted RBP26.69■■□□□ 1.86
SHMT1-207ENST00000580002 TMEM175Q9BSA9 504 aa26.69■■□□□ 1.86
SHMT1-207ENST00000580002 PDCL3Q9H2J4 239 aa26.69■■□□□ 1.86
SHMT1-207ENST00000580002 KCND1Q9NSA2 647 aa26.69■■□□□ 1.86
SHMT1-207ENST00000580002 SALL4Q9UJQ4 1053 aa26.69■■□□□ 1.86
SHMT1-207ENST00000580002 RANBP2P49792 3224 aaKnown RBP26.69■■□□□ 1.86
SHMT1-207ENST00000580002 O00370 1275 aa26.69■■□□□ 1.86
SHMT1-207ENST00000580002 GJB5O95377 273 aa26.69■■□□□ 1.86
SHMT1-207ENST00000580002 FTLP02792 175 aaPredicted RBP26.69■■□□□ 1.86
SHMT1-207ENST00000580002 CYP1A1P04798 512 aaPredicted RBP26.69■■□□□ 1.86
SHMT1-207ENST00000580002 CYP11A1P05108 521 aa26.69■■□□□ 1.86
SHMT1-207ENST00000580002 VDRP11473 427 aa26.69■■□□□ 1.86
SHMT1-207ENST00000580002 ODC1P11926 461 aa26.69■■□□□ 1.86
SHMT1-207ENST00000580002 UNGP13051 313 aaPredicted RBP26.69■■□□□ 1.86
SHMT1-207ENST00000580002 CCDC130P13994 396 aa26.69■■□□□ 1.86
SHMT1-207ENST00000580002 VAV2P52735 878 aa26.69■■□□□ 1.86
SHMT1-207ENST00000580002 SPOUT1Q5T280 376 aaKnown RBP26.69■■□□□ 1.86
SHMT1-207ENST00000580002 ZNF677Q86XU0 584 aa26.69■■□□□ 1.86
SHMT1-207ENST00000580002 CRYBG2Q8N1P7 616 aa26.69■■□□□ 1.86
SHMT1-207ENST00000580002 COLEC11Q9BWP8 271 aa26.69■■□□□ 1.86
SHMT1-207ENST00000580002 CRTAC1Q9NQ79 661 aa26.69■■□□□ 1.86
SHMT1-207ENST00000580002 CYTH4Q9UIA0 394 aa26.69■■□□□ 1.86
SHMT1-207ENST00000580002 MICAL2O94851 1124 aa26.68■■□□□ 1.86
SHMT1-207ENST00000580002 ANXA13P27216 316 aa26.68■■□□□ 1.86
SHMT1-207ENST00000580002 GALCP54803 685 aa26.68■■□□□ 1.86
SHMT1-207ENST00000580002 SGO2Q562F6 1265 aa26.68■■□□□ 1.86
SHMT1-207ENST00000580002 PHLDB2Q86SQ0 1253 aa26.68■■□□□ 1.86
SHMT1-207ENST00000580002 VN1R3Q9BXE9 311 aa26.68■■□□□ 1.86
SHMT1-207ENST00000580002 PCDHB8Q9UN66 801 aa26.68■■□□□ 1.86
SHMT1-207ENST00000580002 ZSCAN12O43309 604 aa26.67■■□□□ 1.86
SHMT1-207ENST00000580002 ABCB4P21439 1286 aa26.67■■□□□ 1.86
SHMT1-207ENST00000580002 NOMO3P69849 1222 aa26.67■■□□□ 1.86
SHMT1-207ENST00000580002 FAM171A1Q5VUB5 890 aa26.67■■□□□ 1.86
SHMT1-207ENST00000580002 LLGL2Q6P1M3 1020 aa26.67■■□□□ 1.86
SHMT1-207ENST00000580002 CEP57Q86XR8 500 aa26.67■■□□□ 1.86
SHMT1-207ENST00000580002 TMEM86AQ8N2M4 240 aa26.67■■□□□ 1.86
SHMT1-207ENST00000580002 TTC39CQ8N584 583 aa26.67■■□□□ 1.86
SHMT1-207ENST00000580002 OR10T2Q8NGX3 314 aa26.67■■□□□ 1.86
SHMT1-207ENST00000580002 ISCUQ9H1K1 167 aa26.67■■□□□ 1.86
SHMT1-207ENST00000580002 WDR3Q9UNX4 943 aaKnown RBP eCLIP26.67■■□□□ 1.86
SHMT1-207ENST00000580002 PAXBP1Q9Y5B6 917 aa26.67■■□□□ 1.86
SHMT1-207ENST00000580002 MYBPHLA2RUH7 354 aa26.66■■□□□ 1.86
SHMT1-207ENST00000580002 CLDN5O00501 218 aa26.66■■□□□ 1.86
SHMT1-207ENST00000580002 IPO7O95373 1038 aaKnown RBP26.66■■□□□ 1.86
SHMT1-207ENST00000580002 PTPN1P18031 435 aaKnown RBP26.66■■□□□ 1.86
SHMT1-207ENST00000580002 MAGEA10P43363 369 aaPredicted RBP26.66■■□□□ 1.86
SHMT1-207ENST00000580002 CNGA2Q16280 664 aa26.66■■□□□ 1.86
SHMT1-207ENST00000580002 FUT10Q6P4F1 479 aa26.66■■□□□ 1.86
SHMT1-207ENST00000580002 KCNT2Q6UVM3 1135 aa26.66■■□□□ 1.86
SHMT1-207ENST00000580002 C1orf131Q8NDD1 294 aaKnown RBP26.66■■□□□ 1.86
SHMT1-207ENST00000580002 ARHGEF26Q96DR7 871 aa26.66■■□□□ 1.86
SHMT1-207ENST00000580002 FAM124BQ9H5Z6 455 aaPredicted RBP26.66■■□□□ 1.86
SHMT1-207ENST00000580002 TSPAN16Q9UKR8 245 aa26.66■■□□□ 1.86
SHMT1-207ENST00000580002 SLC4A7Q9Y6M7 1214 aa26.66■■□□□ 1.86
SHMT1-207ENST00000580002 LCHNA4D1U4 455 aa26.66■■□□□ 1.86
SHMT1-207ENST00000580002 ALDH7A1P49419 539 aaKnown RBP26.66■■□□□ 1.86
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms