RNA–Protein interactions for RNA: ENST00000574867.5

NUP88-210, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 2,081 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-210ENST00000574867 CLSTN3Q9BQT9 956 aa18.24■□□□□ 0.51
NUP88-210ENST00000574867 DNAJC12Q9UKB3 198 aa18.24■□□□□ 0.51
NUP88-210ENST00000574867 PCDHGC5Q9Y5F6 944 aa18.24■□□□□ 0.51
NUP88-210ENST00000574867 C1RP00736 705 aa18.23■□□□□ 0.51
NUP88-210ENST00000574867 PBX1P40424 430 aa18.23■□□□□ 0.51
NUP88-210ENST00000574867 NDST1P52848 882 aa18.23■□□□□ 0.51
NUP88-210ENST00000574867 INTS6LQ5JSJ4 861 aaKnown RBP18.23■□□□□ 0.51
NUP88-210ENST00000574867 KAT5Q92993 513 aa18.23■□□□□ 0.51
NUP88-210ENST00000574867 KLHL5Q96PQ7 755 aa18.23■□□□□ 0.51
NUP88-210ENST00000574867 CDCA3Q99618 268 aaPredicted RBP18.23■□□□□ 0.51
NUP88-210ENST00000574867 SYT15Q9BQS2 421 aa18.23■□□□□ 0.51
NUP88-210ENST00000574867 NT5C1AQ9BXI3 368 aa18.23■□□□□ 0.51
NUP88-210ENST00000574867 TRIM5Q9C035 493 aa18.23■□□□□ 0.51
NUP88-210ENST00000574867 FHOD1Q9Y613 1164 aa18.23■□□□□ 0.51
NUP88-210ENST00000574867 NOL4O94818 638 aa18.22■□□□□ 0.51
NUP88-210ENST00000574867 CPB1P15086 417 aa18.22■□□□□ 0.51
NUP88-210ENST00000574867 RPL17P18621 184 aaKnown RBP18.22■□□□□ 0.51
NUP88-210ENST00000574867 OR1D2P34982 312 aa18.22■□□□□ 0.51
NUP88-210ENST00000574867 SMARCB1Q12824 385 aa18.22■□□□□ 0.51
NUP88-210ENST00000574867 IQCEQ6IPM2 695 aa18.22■□□□□ 0.51
NUP88-210ENST00000574867 GJB7Q6PEY0 223 aa18.22■□□□□ 0.51
NUP88-210ENST00000574867 Q7L0L9 218 aa18.22■□□□□ 0.51
NUP88-210ENST00000574867 PPFIBP1Q86W92 1011 aa18.22■□□□□ 0.51
NUP88-210ENST00000574867 DCP1BQ8IZD4 617 aaKnown RBP18.22■□□□□ 0.51
NUP88-210ENST00000574867 IQCDQ96DY2 449 aa18.22■□□□□ 0.51
NUP88-210ENST00000574867 NAA15Q9BXJ9 866 aaKnown RBP18.22■□□□□ 0.51
NUP88-210ENST00000574867 ZCWPW1Q9H0M4 648 aa18.22■□□□□ 0.51
NUP88-210ENST00000574867 MTCH2Q9Y6C9 303 aa18.22■□□□□ 0.51
NUP88-210ENST00000574867 ITIH6Q6UXX5 1313 aa18.22■□□□□ 0.51
NUP88-210ENST00000574867 CDH23Q9H251 3354 aa18.22■□□□□ 0.51
NUP88-210ENST00000574867 ACO1P21399 889 aaKnown RBP18.22■□□□□ 0.51
NUP88-210ENST00000574867 ACAT1P24752 427 aaKnown RBP18.22■□□□□ 0.51
NUP88-210ENST00000574867 LMO2P25791 158 aa18.22■□□□□ 0.51
NUP88-210ENST00000574867 ROR1Q01973 937 aa18.22■□□□□ 0.51
NUP88-210ENST00000574867 RAB33AQ14088 237 aa18.22■□□□□ 0.51
NUP88-210ENST00000574867 ADGRE1Q14246 886 aa18.22■□□□□ 0.51
NUP88-210ENST00000574867 MAPRE1Q15691 268 aaKnown RBP18.22■□□□□ 0.51
NUP88-210ENST00000574867 RSPO2Q6UXX9 243 aaPredicted RBP18.22■□□□□ 0.51
NUP88-210ENST00000574867 SHC3Q92529 594 aa18.22■□□□□ 0.51
NUP88-210ENST00000574867 HMGXB4Q9UGU5 601 aa18.22■□□□□ 0.51
NUP88-210ENST00000574867 KLRC2P26717 231 aa18.21■□□□□ 0.51
NUP88-210ENST00000574867 RAPGEF1Q13905 1077 aa18.21■□□□□ 0.51
NUP88-210ENST00000574867 FIGNQ5HY92 759 aa18.21■□□□□ 0.51
NUP88-210ENST00000574867 B3GALNT2Q8NCR0 500 aa18.21■□□□□ 0.51
NUP88-210ENST00000574867 NUP58Q9BVL2 599 aa18.21■□□□□ 0.51
NUP88-210ENST00000574867 CEP72Q9P209 647 aa18.21■□□□□ 0.51
NUP88-210ENST00000574867 CNTN6Q9UQ52 1028 aa18.21■□□□□ 0.51
NUP88-210ENST00000574867 NME7Q9Y5B8 376 aa18.21■□□□□ 0.51
NUP88-210ENST00000574867 PCDHB4Q9Y5E5 795 aa18.21■□□□□ 0.51
NUP88-210ENST00000574867 EPHB6O15197 1021 aa18.21■□□□□ 0.51
NUP88-210ENST00000574867 ADAM12O43184 909 aa18.21■□□□□ 0.51
NUP88-210ENST00000574867 AP5Z1O43299 807 aa18.21■□□□□ 0.51
NUP88-210ENST00000574867 PDGFRBP09619 1106 aa18.21■□□□□ 0.51
NUP88-210ENST00000574867 IGFBP4P22692 258 aa18.21■□□□□ 0.51
NUP88-210ENST00000574867 POLR2FP61218 127 aaKnown RBP18.21■□□□□ 0.51
NUP88-210ENST00000574867 GPR17Q13304 367 aa18.21■□□□□ 0.51
NUP88-210ENST00000574867 NFE2Q16621 373 aaPredicted RBP18.21■□□□□ 0.51
NUP88-210ENST00000574867 ARHGAP44Q17R89 818 aa18.21■□□□□ 0.51
NUP88-210ENST00000574867 TPGS2Q68CL5 300 aa18.21■□□□□ 0.51
NUP88-210ENST00000574867 TMEM270Q6UE05 265 aa18.21■□□□□ 0.51
NUP88-210ENST00000574867 ADGRD2Q7Z7M1 963 aa18.21■□□□□ 0.51
NUP88-210ENST00000574867 GLYCTKQ8IVS8 523 aa18.21■□□□□ 0.51
NUP88-210ENST00000574867 CRYBG2Q8N1P7 616 aa18.21■□□□□ 0.51
NUP88-210ENST00000574867 WHAMMQ8TF30 809 aa18.21■□□□□ 0.51
NUP88-210ENST00000574867 CDX2Q99626 313 aaPredicted RBP18.21■□□□□ 0.51
NUP88-210ENST00000574867 STK33Q9BYT3 514 aa18.21■□□□□ 0.51
NUP88-210ENST00000574867 TLE6Q9H808 572 aa18.21■□□□□ 0.51
NUP88-210ENST00000574867 AJAP1Q9UKB5 411 aaPredicted RBP18.21■□□□□ 0.51
NUP88-210ENST00000574867 MAFFQ9ULX9 164 aa18.21■□□□□ 0.51
NUP88-210ENST00000574867 WDR27A2RRH5 827 aa18.2■□□□□ 0.5
NUP88-210ENST00000574867 GOLGA6L3A6NEY3 463 aa18.2■□□□□ 0.5
NUP88-210ENST00000574867 HCRTO43612 131 aa18.2■□□□□ 0.5
NUP88-210ENST00000574867 ARPP19P56211 112 aa18.2■□□□□ 0.5
NUP88-210ENST00000574867 PSMC1P62191 440 aaKnown RBP18.2■□□□□ 0.5
NUP88-210ENST00000574867 DUSP6Q16828 381 aa18.2■□□□□ 0.5
NUP88-210ENST00000574867 SLC39A12Q504Y0 691 aa18.2■□□□□ 0.5
NUP88-210ENST00000574867 ZNF461Q8TAF7 563 aa18.2■□□□□ 0.5
NUP88-210ENST00000574867 C2orf15Q8WU43 125 aaKnown RBP18.2■□□□□ 0.5
NUP88-210ENST00000574867 TMEM176AQ96HP8 235 aa18.2■□□□□ 0.5
NUP88-210ENST00000574867 GUCD1Q96NT3 240 aa18.2■□□□□ 0.5
NUP88-210ENST00000574867 TWNKQ96RR1 684 aa18.2■□□□□ 0.5
NUP88-210ENST00000574867 TMEM209Q96SK2 561 aa18.2■□□□□ 0.5
NUP88-210ENST00000574867 PKMYT1Q99640 499 aa18.2■□□□□ 0.5
NUP88-210ENST00000574867 ELOVL4Q9GZR5 314 aa18.2■□□□□ 0.5
NUP88-210ENST00000574867 DPEP3Q9H4B8 488 aa18.2■□□□□ 0.5
NUP88-210ENST00000574867 CLASP2O75122 1294 aaKnown RBP18.19■□□□□ 0.5
NUP88-210ENST00000574867 GLUD1P00367 558 aa18.19■□□□□ 0.5
NUP88-210ENST00000574867 PAEPP09466 180 aa18.19■□□□□ 0.5
NUP88-210ENST00000574867 OR4Q2P0C623 313 aa18.19■□□□□ 0.5
NUP88-210ENST00000574867 PTPN1P18031 435 aaKnown RBP18.19■□□□□ 0.5
NUP88-210ENST00000574867 RAD23BP54727 409 aa18.19■□□□□ 0.5
NUP88-210ENST00000574867 DRAP1Q14919 205 aaPredicted RBP18.19■□□□□ 0.5
NUP88-210ENST00000574867 PTPN21Q16825 1174 aa18.19■□□□□ 0.5
NUP88-210ENST00000574867 FAM171BQ6P995 826 aa18.19■□□□□ 0.5
NUP88-210ENST00000574867 CACNA2D4Q7Z3S7 1137 aa18.19■□□□□ 0.5
NUP88-210ENST00000574867 VSTM4Q8IW00 320 aa18.19■□□□□ 0.5
NUP88-210ENST00000574867 RBBP8NLQ8NC74 664 aaPredicted RBP18.19■□□□□ 0.5
NUP88-210ENST00000574867 MYCBPAPQ8TBZ2 947 aa18.19■□□□□ 0.5
NUP88-210ENST00000574867 MRFAP1L1Q96HT8 127 aa18.19■□□□□ 0.5
NUP88-210ENST00000574867 SPAG5Q96R06 1193 aa18.19■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms