RNA–Protein interactions for RNA: ENST00000572665.1

CIITA-208, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 5

Gene CIITA, Length 560 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-208ENST00000572665 CCDC194A0A1B0GVG4 234 aa10.33□□□□□ -0.76
CIITA-208ENST00000572665 MARCH6O60337 910 aa10.33□□□□□ -0.76
CIITA-208ENST00000572665 PSMD10O75832 226 aa10.33□□□□□ -0.76
CIITA-208ENST00000572665 GCFC2P16383 781 aaKnown RBP10.33□□□□□ -0.76
CIITA-208ENST00000572665 ETV3P41162 512 aa10.33□□□□□ -0.76
CIITA-208ENST00000572665 RAB27AP51159 221 aa10.33□□□□□ -0.76
CIITA-208ENST00000572665 PSMC5P62195 406 aa10.33□□□□□ -0.76
CIITA-208ENST00000572665 SMC1AQ14683 1233 aaKnown RBP10.33□□□□□ -0.76
CIITA-208ENST00000572665 NCAPHQ15003 741 aa10.33□□□□□ -0.76
CIITA-208ENST00000572665 MTERF2Q49AM1 385 aa10.33□□□□□ -0.76
CIITA-208ENST00000572665 PLPP4Q5VZY2 271 aa10.33□□□□□ -0.76
CIITA-208ENST00000572665 CES5AQ6NT32 575 aa10.33□□□□□ -0.76
CIITA-208ENST00000572665 TMEM184AQ6ZMB5 413 aa10.33□□□□□ -0.76
CIITA-208ENST00000572665 SUGP1Q8IWZ8 645 aaKnown RBP10.33□□□□□ -0.76
CIITA-208ENST00000572665 LINC01465Q8N7H1 131 aa10.33□□□□□ -0.76
CIITA-208ENST00000572665 WASF1Q92558 559 aa10.33□□□□□ -0.76
CIITA-208ENST00000572665 EDAQ92838 391 aa10.33□□□□□ -0.76
CIITA-208ENST00000572665 CASP10Q92851 521 aa10.33□□□□□ -0.76
CIITA-208ENST00000572665 PGBD4Q96DM1 585 aa10.33□□□□□ -0.76
CIITA-208ENST00000572665 TMEM169Q96HH4 297 aa10.33□□□□□ -0.76
CIITA-208ENST00000572665 KREMEN1Q96MU8 473 aa10.33□□□□□ -0.76
CIITA-208ENST00000572665 NECTIN4Q96NY8 510 aa10.33□□□□□ -0.76
CIITA-208ENST00000572665 DEPDC7Q96QD5 511 aa10.33□□□□□ -0.76
CIITA-208ENST00000572665 SRPK1Q96SB4 655 aaKnown RBP10.33□□□□□ -0.76
CIITA-208ENST00000572665 CCDC113Q9H0I3 377 aa10.33□□□□□ -0.76
CIITA-208ENST00000572665 SLKQ9H2G2 1235 aaPredicted RBP10.33□□□□□ -0.76
CIITA-208ENST00000572665 UNC45AQ9H3U1 944 aa10.33□□□□□ -0.76
CIITA-208ENST00000572665 CWH43Q9H720 699 aa10.33□□□□□ -0.76
CIITA-208ENST00000572665 SNTG2Q9NY99 539 aa10.33□□□□□ -0.76
CIITA-208ENST00000572665 DDX25Q9UHL0 483 aaKnown RBP10.33□□□□□ -0.76
CIITA-208ENST00000572665 MUTYHQ9UIF7 546 aa10.33□□□□□ -0.76
CIITA-208ENST00000572665 BARX2Q9UMQ3 279 aaPredicted RBP10.33□□□□□ -0.76
CIITA-208ENST00000572665 NR2E1Q9Y466 385 aa10.33□□□□□ -0.76
CIITA-208ENST00000572665 USP15Q9Y4E8 981 aaPredicted RBP10.33□□□□□ -0.76
CIITA-208ENST00000572665 LOC730098B7Z3J9 87 aa10.32□□□□□ -0.76
CIITA-208ENST00000572665 PER2O15055 1255 aa10.32□□□□□ -0.76
CIITA-208ENST00000572665 TECP42680 631 aa10.32□□□□□ -0.76
CIITA-208ENST00000572665 ERVFC1P60507 584 aa10.32□□□□□ -0.76
CIITA-208ENST00000572665 SLC7A5Q01650 507 aa10.32□□□□□ -0.76
CIITA-208ENST00000572665 CBX2Q14781 532 aaPredicted RBP10.32□□□□□ -0.76
CIITA-208ENST00000572665 ANKRD1Q15327 319 aa10.32□□□□□ -0.76
CIITA-208ENST00000572665 BBS9Q3SYG4 887 aa10.32□□□□□ -0.76
CIITA-208ENST00000572665 TWF2Q6IBS0 349 aaKnown RBP10.32□□□□□ -0.76
CIITA-208ENST00000572665 MRM1Q6IN84 353 aaKnown RBP10.32□□□□□ -0.76
CIITA-208ENST00000572665 OGFOD3Q6PK18 319 aa10.32□□□□□ -0.76
CIITA-208ENST00000572665 OTUD6AQ7L8S5 288 aa10.32□□□□□ -0.76
CIITA-208ENST00000572665 BMP8AQ7Z5Y6 402 aa10.32□□□□□ -0.76
CIITA-208ENST00000572665 SKAP1Q86WV1 359 aa10.32□□□□□ -0.76
CIITA-208ENST00000572665 FAM20AQ96MK3 541 aa10.32□□□□□ -0.76
CIITA-208ENST00000572665 CASD1Q96PB1 797 aa10.32□□□□□ -0.76
CIITA-208ENST00000572665 NCOA5Q9HCD5 579 aaKnown RBP10.32□□□□□ -0.76
CIITA-208ENST00000572665 PDRG1Q9NUG6 133 aa10.32□□□□□ -0.76
CIITA-208ENST00000572665 RBAK-RBAKDNI3L0D1 243 aa10.31□□□□□ -0.76
CIITA-208ENST00000572665 TBX3O15119 743 aa10.31□□□□□ -0.76
CIITA-208ENST00000572665 MAFO75444 373 aaPredicted RBP10.31□□□□□ -0.76
CIITA-208ENST00000572665 BAG4O95429 457 aaKnown RBP10.31□□□□□ -0.76
CIITA-208ENST00000572665 GLP2RO95838 553 aa10.31□□□□□ -0.76
CIITA-208ENST00000572665 CA8P35219 290 aa10.31□□□□□ -0.76
CIITA-208ENST00000572665 QARSP47897 775 aaKnown RBP10.31□□□□□ -0.76
CIITA-208ENST00000572665 RNASELQ05823 741 aaKnown RBP10.31□□□□□ -0.76
CIITA-208ENST00000572665 ITIH3Q06033 890 aa10.31□□□□□ -0.76
CIITA-208ENST00000572665 NCBP1Q09161 790 aaKnown RBP10.31□□□□□ -0.76
CIITA-208ENST00000572665 TOB2Q14106 344 aaPredicted RBP10.31□□□□□ -0.76
CIITA-208ENST00000572665 PCBP1Q15365 356 aaKnown RBP eCLIP10.31□□□□□ -0.76
CIITA-208ENST00000572665 TARBP2Q15633 366 aaKnown RBP10.31□□□□□ -0.76
CIITA-208ENST00000572665 TDRD10Q5VZ19 366 aaKnown RBP10.31□□□□□ -0.76
CIITA-208ENST00000572665 RNF43Q68DV7 783 aa10.31□□□□□ -0.76
CIITA-208ENST00000572665 KIAA1211LQ6NV74 962 aa10.31□□□□□ -0.76
CIITA-208ENST00000572665 ANKRD54Q6NXT1 300 aa10.31□□□□□ -0.76
CIITA-208ENST00000572665 GLB1LQ6UWU2 654 aa10.31□□□□□ -0.76
CIITA-208ENST00000572665 CATSPER4Q7RTX7 472 aa10.31□□□□□ -0.76
CIITA-208ENST00000572665 NEK8Q86SG6 692 aa10.31□□□□□ -0.76
CIITA-208ENST00000572665 NOP9Q86U38 636 aaKnown RBP10.31□□□□□ -0.76
CIITA-208ENST00000572665 RHPN2Q8IUC4 686 aa10.31□□□□□ -0.76
CIITA-208ENST00000572665 SHISA5Q8N114 240 aa10.31□□□□□ -0.76
CIITA-208ENST00000572665 SLC39A11Q8N1S5 342 aa10.31□□□□□ -0.76
CIITA-208ENST00000572665 URGCPQ8TCY9 931 aa10.31□□□□□ -0.76
CIITA-208ENST00000572665 RNF141Q8WVD5 230 aa10.31□□□□□ -0.76
CIITA-208ENST00000572665 TCP11Q8WWU5 503 aa10.31□□□□□ -0.76
CIITA-208ENST00000572665 RPGRIP1Q96KN7 1286 aa10.31□□□□□ -0.76
CIITA-208ENST00000572665 MBOAT7Q96N66 472 aa10.31□□□□□ -0.76
CIITA-208ENST00000572665 IRF2BPLQ9H1B7 796 aa10.31□□□□□ -0.76
CIITA-208ENST00000572665 SUCLA2Q9P2R7 463 aaPredicted RBP10.31□□□□□ -0.76
CIITA-208ENST00000572665 STK36Q9NRP7 1315 aa10.31□□□□□ -0.76
CIITA-208ENST00000572665 A0A087WZ62 844 aa10.3□□□□□ -0.76
CIITA-208ENST00000572665 IGKV6-21A0A0C4DH24 114 aa10.3□□□□□ -0.76
CIITA-208ENST00000572665 FAM221BA6H8Z2 402 aa10.3□□□□□ -0.76
CIITA-208ENST00000572665 ASAP2O43150 1006 aa10.3□□□□□ -0.76
CIITA-208ENST00000572665 TDP2O95551 362 aa10.3□□□□□ -0.76
CIITA-208ENST00000572665 PROCP04070 461 aa10.3□□□□□ -0.76
CIITA-208ENST00000572665 POLGP54098 1239 aaPredicted RBP10.3□□□□□ -0.76
CIITA-208ENST00000572665 BCAR1P56945 870 aa10.3□□□□□ -0.76
CIITA-208ENST00000572665 RNF4P78317 190 aa10.3□□□□□ -0.76
CIITA-208ENST00000572665 ZXDAP98168 799 aa10.3□□□□□ -0.76
CIITA-208ENST00000572665 STK3Q13188 491 aa10.3□□□□□ -0.76
CIITA-208ENST00000572665 PPP2R5CQ13362 524 aa10.3□□□□□ -0.76
CIITA-208ENST00000572665 DOC2BQ14184 412 aa10.3□□□□□ -0.76
CIITA-208ENST00000572665 UGCGQ16739 394 aa10.3□□□□□ -0.76
CIITA-208ENST00000572665 INF2Q27J81 1249 aa10.3□□□□□ -0.76
CIITA-208ENST00000572665 LETM2Q2VYF4 491 aa10.3□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 87.1 ms