RNA–Protein interactions for RNA: ENST00000571805.5

VPS53-211, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,356 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-211ENST00000571805 GGT7Q9UJ14 662 aa24.04■■□□□ 1.44
VPS53-211ENST00000571805 RASA4BC9J798 803 aa24.03■■□□□ 1.44
VPS53-211ENST00000571805 RASA4O43374 803 aa24.03■■□□□ 1.44
VPS53-211ENST00000571805 NEDD9Q14511 834 aa24.03■■□□□ 1.44
VPS53-211ENST00000571805 FASTKD3Q14CZ7 662 aaKnown RBP24.03■■□□□ 1.44
VPS53-211ENST00000571805 TMED2Q15363 201 aa24.03■■□□□ 1.44
VPS53-211ENST00000571805 IER5Q5VY09 327 aa24.03■■□□□ 1.44
VPS53-211ENST00000571805 ERICH1Q86X53 443 aa24.03■■□□□ 1.44
VPS53-211ENST00000571805 TDRPQ86YL5 185 aa24.03■■□□□ 1.44
VPS53-211ENST00000571805 SEPT1Q8WYJ6 367 aa24.03■■□□□ 1.44
VPS53-211ENST00000571805 DDX56Q9NY93 547 aaKnown RBP24.03■■□□□ 1.44
VPS53-211ENST00000571805 DYNC1LI1Q9Y6G9 523 aaKnown RBP24.03■■□□□ 1.44
VPS53-211ENST00000571805 ITGAVP06756 1048 aa24.03■■□□□ 1.44
VPS53-211ENST00000571805 LAMTOR4Q0VGL1 99 aa24.03■■□□□ 1.44
VPS53-211ENST00000571805 MORF4L2Q15014 288 aa24.03■■□□□ 1.44
VPS53-211ENST00000571805 TREML2Q5T2D2 321 aa24.03■■□□□ 1.44
VPS53-211ENST00000571805 RNASEH2BQ5TBB1 312 aaKnown RBP24.03■■□□□ 1.44
VPS53-211ENST00000571805 CYP4A22Q5TCH4 519 aa24.03■■□□□ 1.44
VPS53-211ENST00000571805 PPP1R21Q6ZMI0 780 aa24.03■■□□□ 1.44
VPS53-211ENST00000571805 TRABD2AQ86V40 505 aa24.03■■□□□ 1.44
VPS53-211ENST00000571805 CCDC63Q8NA47 563 aa24.03■■□□□ 1.44
VPS53-211ENST00000571805 TRPM4Q8TD43 1214 aa24.03■■□□□ 1.44
VPS53-211ENST00000571805 TTC25Q96NG3 672 aa24.03■■□□□ 1.44
VPS53-211ENST00000571805 XYLT2Q9H1B5 865 aa24.03■■□□□ 1.44
VPS53-211ENST00000571805 ARL2BPQ9Y2Y0 163 aa24.03■■□□□ 1.44
VPS53-211ENST00000571805 EXOC1LA0A1B0GW35 172 aa24.02■■□□□ 1.44
VPS53-211ENST00000571805 C3orf70A6NLC5 250 aaPredicted RBP24.02■■□□□ 1.44
VPS53-211ENST00000571805 HOXC6P09630 235 aa24.02■■□□□ 1.44
VPS53-211ENST00000571805 SRGAP2CP0DJJ0 459 aa24.02■■□□□ 1.44
VPS53-211ENST00000571805 FOXN2P32314 431 aa24.02■■□□□ 1.44
VPS53-211ENST00000571805 ASPAP45381 313 aa24.02■■□□□ 1.44
VPS53-211ENST00000571805 WDR4P57081 412 aaKnown RBP24.02■■□□□ 1.44
VPS53-211ENST00000571805 MAGEC3Q8TD91 643 aa24.02■■□□□ 1.44
VPS53-211ENST00000571805 LRRD1A4D1F6 860 aa24.02■■□□□ 1.44
VPS53-211ENST00000571805 ALOX15BO15296 676 aa24.02■■□□□ 1.44
VPS53-211ENST00000571805 PRKCBP05771 671 aa24.02■■□□□ 1.44
VPS53-211ENST00000571805 TAC1P20366 129 aa24.02■■□□□ 1.44
VPS53-211ENST00000571805 SLC35B2Q8TB61 432 aa24.02■■□□□ 1.44
VPS53-211ENST00000571805 HAUS1Q96CS2 278 aa24.02■■□□□ 1.44
VPS53-211ENST00000571805 TRPC3Q13507 836 aa24.01■■□□□ 1.43
VPS53-211ENST00000571805 SURF1Q15526 300 aa24.01■■□□□ 1.43
VPS53-211ENST00000571805 ZKSCAN8Q15776 578 aaPredicted RBP24.01■■□□□ 1.43
VPS53-211ENST00000571805 METTL7BQ6UX53 244 aa24.01■■□□□ 1.43
VPS53-211ENST00000571805 RIOX2Q8IUF8 465 aa24.01■■□□□ 1.43
VPS53-211ENST00000571805 DDX55Q8NHQ9 600 aaKnown RBP eCLIP24.01■■□□□ 1.43
VPS53-211ENST00000571805 TMEM121Q9BTD3 319 aa24.01■■□□□ 1.43
VPS53-211ENST00000571805 FAM47DPA6NHR8 397 aa24.01■■□□□ 1.43
VPS53-211ENST00000571805 ZBTB42B2RXF5 422 aa24.01■■□□□ 1.43
VPS53-211ENST00000571805 TGFB3P10600 412 aa24.01■■□□□ 1.43
VPS53-211ENST00000571805 NCALDP61601 193 aa24.01■■□□□ 1.43
VPS53-211ENST00000571805 NR1H3Q13133 447 aa24.01■■□□□ 1.43
VPS53-211ENST00000571805 LY6KQ17RY6 165 aa24.01■■□□□ 1.43
VPS53-211ENST00000571805 DENND1BQ6P3S1 775 aa24.01■■□□□ 1.43
VPS53-211ENST00000571805 SCARA5Q6ZMJ2 495 aa24.01■■□□□ 1.43
VPS53-211ENST00000571805 POLNQ7Z5Q5 900 aa24.01■■□□□ 1.43
VPS53-211ENST00000571805 RNF149Q8NC42 400 aa24.01■■□□□ 1.43
VPS53-211ENST00000571805 PPME1Q9Y570 386 aa24.01■■□□□ 1.43
VPS53-211ENST00000571805 CFAP73A6NFT4 308 aa24■■□□□ 1.43
VPS53-211ENST00000571805 ITGBL1O95965 494 aaPredicted RBP24■■□□□ 1.43
VPS53-211ENST00000571805 PROZP22891 400 aa24■■□□□ 1.43
VPS53-211ENST00000571805 RFC1P35251 1148 aaPredicted RBP24■■□□□ 1.43
VPS53-211ENST00000571805 TFAMQ00059 246 aaKnown RBP24■■□□□ 1.43
VPS53-211ENST00000571805 BNIP1Q12981 228 aa24■■□□□ 1.43
VPS53-211ENST00000571805 PRKG1Q13976 671 aa24■■□□□ 1.43
VPS53-211ENST00000571805 MAPK6Q16659 721 aa24■■□□□ 1.43
VPS53-211ENST00000571805 HP1BP3Q5SSJ5 553 aaPredicted RBP24■■□□□ 1.43
VPS53-211ENST00000571805 ARFGAP1Q8N6T3 406 aa24■■□□□ 1.43
VPS53-211ENST00000571805 DENND1AQ8TEH3 1009 aa24■■□□□ 1.43
VPS53-211ENST00000571805 PCDH9Q9HC56 1237 aa24■■□□□ 1.43
VPS53-211ENST00000571805 UBN1Q9NPG3 1134 aa24■■□□□ 1.43
VPS53-211ENST00000571805 MGAMO43451 1857 aa24■■□□□ 1.43
VPS53-211ENST00000571805 IGKV6-21A0A0C4DH24 114 aa24■■□□□ 1.43
VPS53-211ENST00000571805 MXD4Q14582 209 aaPredicted RBP24■■□□□ 1.43
VPS53-211ENST00000571805 MTFR1Q15390 333 aa24■■□□□ 1.43
VPS53-211ENST00000571805 ZNF699Q32M78 642 aa24■■□□□ 1.43
VPS53-211ENST00000571805 LRRC71Q8N4P6 559 aa24■■□□□ 1.43
VPS53-211ENST00000571805 FAM167AQ96KS9 214 aa24■■□□□ 1.43
VPS53-211ENST00000571805 PLCD4Q9BRC7 762 aa24■■□□□ 1.43
VPS53-211ENST00000571805 PTPRHQ9HD43 1115 aa24■■□□□ 1.43
VPS53-211ENST00000571805 GGA3Q9NZ52 723 aa24■■□□□ 1.43
VPS53-211ENST00000571805 CYTH4Q9UIA0 394 aa24■■□□□ 1.43
VPS53-211ENST00000571805 SHOC2Q9UQ13 582 aa24■■□□□ 1.43
VPS53-211ENST00000571805 LTBP3Q9NS15 1303 aa24■■□□□ 1.43
VPS53-211ENST00000571805 A0A0G2JMZ2 1700 aa23.99■■□□□ 1.43
VPS53-211ENST00000571805 ASMTLO95671 621 aa23.99■■□□□ 1.43
VPS53-211ENST00000571805 SLC25A11Q02978 314 aaKnown RBP23.99■■□□□ 1.43
VPS53-211ENST00000571805 PTPN20Q4JDL3 420 aa23.99■■□□□ 1.43
VPS53-211ENST00000571805 TBC1D1Q86TI0 1168 aaPredicted RBP23.99■■□□□ 1.43
VPS53-211ENST00000571805 FITM2Q8N6M3 262 aa23.99■■□□□ 1.43
VPS53-211ENST00000571805 GBP7Q8N8V2 638 aaPredicted RBP23.99■■□□□ 1.43
VPS53-211ENST00000571805 TCP11Q8WWU5 503 aa23.99■■□□□ 1.43
VPS53-211ENST00000571805 PRCCQ92733 491 aaPredicted RBP23.99■■□□□ 1.43
VPS53-211ENST00000571805 ANK1P16157 1881 aa23.99■■□□□ 1.43
VPS53-211ENST00000571805 PTPRFP10586 1907 aa23.99■■□□□ 1.43
VPS53-211ENST00000571805 ZBTB7AO95365 584 aa23.99■■□□□ 1.43
VPS53-211ENST00000571805 IL9RQ01113 521 aa23.99■■□□□ 1.43
VPS53-211ENST00000571805 ZBTB8OSQ8IWT0 167 aa23.99■■□□□ 1.43
VPS53-211ENST00000571805 TJP2Q9UDY2 1190 aa23.99■■□□□ 1.43
VPS53-211ENST00000571805 STRIP2Q9ULQ0 834 aa23.99■■□□□ 1.43
VPS53-211ENST00000571805 CEP83Q9Y592 693 aa23.99■■□□□ 1.43
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms