RNA–Protein interactions for RNA: ENST00000570510.6

VPS53-207, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 570 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-207ENST00000570510 SNX14Q9Y5W7 946 aa12.05□□□□□ -0.48
VPS53-207ENST00000570510 STK24Q9Y6E0 443 aa12.05□□□□□ -0.48
VPS53-207ENST00000570510 MTMR11A4FU01 709 aa12.04□□□□□ -0.48
VPS53-207ENST00000570510 FAM221BA6H8Z2 402 aa12.04□□□□□ -0.48
VPS53-207ENST00000570510 OTOL1A6NHN0 477 aaPredicted RBP12.04□□□□□ -0.48
VPS53-207ENST00000570510 UPK3BL1B0FP48 263 aa12.04□□□□□ -0.48
VPS53-207ENST00000570510 UPK3BL2E5RIL1 263 aa12.04□□□□□ -0.48
VPS53-207ENST00000570510 TNFRSF10BO14763 440 aa12.04□□□□□ -0.48
VPS53-207ENST00000570510 GJA4P35212 333 aa12.04□□□□□ -0.48
VPS53-207ENST00000570510 MATR3P43243 847 aaKnown RBP eCLIP12.04□□□□□ -0.48
VPS53-207ENST00000570510 IFNAR2P48551 515 aa12.04□□□□□ -0.48
VPS53-207ENST00000570510 SEC13P55735 322 aa12.04□□□□□ -0.48
VPS53-207ENST00000570510 SEMA3BQ13214 749 aa12.04□□□□□ -0.48
VPS53-207ENST00000570510 MYBPC2Q14324 1141 aa12.04□□□□□ -0.48
VPS53-207ENST00000570510 LYSMD4Q5XG99 296 aa12.04□□□□□ -0.48
VPS53-207ENST00000570510 PIP4P1Q86T03 277 aa12.04□□□□□ -0.48
VPS53-207ENST00000570510 SKAP1Q86WV1 359 aa12.04□□□□□ -0.48
VPS53-207ENST00000570510 PGBD3Q8N328 593 aa12.04□□□□□ -0.48
VPS53-207ENST00000570510 CEP76Q8TAP6 659 aa12.04□□□□□ -0.48
VPS53-207ENST00000570510 CNOT6LQ96LI5 555 aaKnown RBP12.04□□□□□ -0.48
VPS53-207ENST00000570510 ACO2Q99798 780 aaKnown RBP12.04□□□□□ -0.48
VPS53-207ENST00000570510 LPIN3Q9BQK8 851 aa12.04□□□□□ -0.48
VPS53-207ENST00000570510 CRISPLD1Q9H336 500 aa12.04□□□□□ -0.48
VPS53-207ENST00000570510 POLD4Q9HCU8 107 aa12.04□□□□□ -0.48
VPS53-207ENST00000570510 TUFT1Q9NNX1 390 aa12.04□□□□□ -0.48
VPS53-207ENST00000570510 DUS2Q9NX74 493 aaKnown RBP12.04□□□□□ -0.48
VPS53-207ENST00000570510 ATG2BQ96BY7 2078 aa12.04□□□□□ -0.48
VPS53-207ENST00000570510 LAMA5O15230 3695 aa12.04□□□□□ -0.48
VPS53-207ENST00000570510 M0QZQ0 153 aa12.03□□□□□ -0.48
VPS53-207ENST00000570510 VNN2O95498 520 aa12.03□□□□□ -0.48
VPS53-207ENST00000570510 MCF2P10911 925 aa12.03□□□□□ -0.48
VPS53-207ENST00000570510 DDX6P26196 483 aaKnown RBP eCLIP12.03□□□□□ -0.48
VPS53-207ENST00000570510 TRIP6Q15654 476 aaKnown RBP12.03□□□□□ -0.48
VPS53-207ENST00000570510 SLC39A12Q504Y0 691 aa12.03□□□□□ -0.48
VPS53-207ENST00000570510 SLC23A3Q6PIS1 610 aa12.03□□□□□ -0.48
VPS53-207ENST00000570510 RUFY3Q7L099 469 aa12.03□□□□□ -0.48
VPS53-207ENST00000570510 RABEPKQ7Z6M1 372 aa12.03□□□□□ -0.48
VPS53-207ENST00000570510 RAB44Q7Z6P3 723 aaPredicted RBP12.03□□□□□ -0.48
VPS53-207ENST00000570510 CATSPER3Q86XQ3 398 aa12.03□□□□□ -0.48
VPS53-207ENST00000570510 OXER1Q8TDS5 423 aa12.03□□□□□ -0.48
VPS53-207ENST00000570510 GIPC2Q8TF65 315 aa12.03□□□□□ -0.48
VPS53-207ENST00000570510 RLN3Q8WXF3 142 aa12.03□□□□□ -0.48
VPS53-207ENST00000570510 MRPS31Q92665 395 aaKnown RBP12.03□□□□□ -0.48
VPS53-207ENST00000570510 USP13Q92995 863 aaPredicted RBP12.03□□□□□ -0.48
VPS53-207ENST00000570510 ATP2A3Q93084 1043 aa12.03□□□□□ -0.48
VPS53-207ENST00000570510 ECT2Q9H8V3 914 aa12.03□□□□□ -0.48
VPS53-207ENST00000570510 HSFX1Q9UBD0 423 aa12.03□□□□□ -0.48
VPS53-207ENST00000570510 MBD1Q9UIS9 605 aaPredicted RBP12.03□□□□□ -0.48
VPS53-207ENST00000570510 SLC6A14Q9UN76 642 aa12.03□□□□□ -0.48
VPS53-207ENST00000570510 CCL26Q9Y258 94 aa12.03□□□□□ -0.48
VPS53-207ENST00000570510 RAXQ9Y2V3 346 aa12.03□□□□□ -0.48
VPS53-207ENST00000570510 CYP46A1Q9Y6A2 500 aa12.03□□□□□ -0.48
VPS53-207ENST00000570510 ITPR1Q14643 2758 aa12.03□□□□□ -0.48
VPS53-207ENST00000570510 SMG1Q96Q15 3661 aaKnown RBP12.03□□□□□ -0.48
VPS53-207ENST00000570510 PHLPP2Q6ZVD8 1323 aa12.03□□□□□ -0.48
VPS53-207ENST00000570510 ATXN2Q99700 1313 aaKnown RBP12.03□□□□□ -0.48
VPS53-207ENST00000570510 XPOTO43592 962 aaKnown RBP12.02□□□□□ -0.49
VPS53-207ENST00000570510 SPATA31C1P0DKV0 1188 aa12.02□□□□□ -0.49
VPS53-207ENST00000570510 ODC1P11926 461 aa12.02□□□□□ -0.49
VPS53-207ENST00000570510 KRT2P35908 639 aa12.02□□□□□ -0.49
VPS53-207ENST00000570510 PTGER3P43115 390 aa12.02□□□□□ -0.49
VPS53-207ENST00000570510 CDR1P51861 262 aa12.02□□□□□ -0.49
VPS53-207ENST00000570510 DMP1Q13316 513 aaPredicted RBP12.02□□□□□ -0.49
VPS53-207ENST00000570510 ANKRD1Q15327 319 aa12.02□□□□□ -0.49
VPS53-207ENST00000570510 DUOXA1Q1HG43 343 aa12.02□□□□□ -0.49
VPS53-207ENST00000570510 NAIF1Q69YI7 327 aaPredicted RBP12.02□□□□□ -0.49
VPS53-207ENST00000570510 MPZL3Q6UWV2 235 aa12.02□□□□□ -0.49
VPS53-207ENST00000570510 CCDC33Q8N5R6 958 aa12.02□□□□□ -0.49
VPS53-207ENST00000570510 TTC9BQ8N6N2 239 aa12.02□□□□□ -0.49
VPS53-207ENST00000570510 MDGA1Q8NFP4 955 aa12.02□□□□□ -0.49
VPS53-207ENST00000570510 MDM1Q8TC05 714 aa12.02□□□□□ -0.49
VPS53-207ENST00000570510 ADAM32Q8TC27 787 aa12.02□□□□□ -0.49
VPS53-207ENST00000570510 WHAMMQ8TF30 809 aa12.02□□□□□ -0.49
VPS53-207ENST00000570510 ZNF274Q96GC6 653 aaPredicted RBP12.02□□□□□ -0.49
VPS53-207ENST00000570510 BBC3Q96PG8 261 aaPredicted RBP12.02□□□□□ -0.49
VPS53-207ENST00000570510 TARS2Q9BW92 718 aaKnown RBP12.02□□□□□ -0.49
VPS53-207ENST00000570510 POLMQ9NP87 494 aaPredicted RBP12.02□□□□□ -0.49
VPS53-207ENST00000570510 TMEM74BQ9NUR3 256 aa12.02□□□□□ -0.49
VPS53-207ENST00000570510 TUBGCP4Q9UGJ1 667 aa12.02□□□□□ -0.49
VPS53-207ENST00000570510 TBX20Q9UMR3 447 aa12.02□□□□□ -0.49
VPS53-207ENST00000570510 MAGED2Q9UNF1 606 aaPredicted RBP12.02□□□□□ -0.49
VPS53-207ENST00000570510 APOBEC2Q9Y235 224 aaKnown RBP12.02□□□□□ -0.49
VPS53-207ENST00000570510 GTF3C5Q9Y5Q8 519 aaPredicted RBP12.02□□□□□ -0.49
VPS53-207ENST00000570510 FREM2Q5SZK8 3169 aa12.02□□□□□ -0.49
VPS53-207ENST00000570510 THADAQ6YHU6 1953 aa12.01□□□□□ -0.49
VPS53-207ENST00000570510 ABCA7Q8IZY2 2146 aa12.01□□□□□ -0.49
VPS53-207ENST00000570510 LOC400499M0QZD8 3231 aa12.01□□□□□ -0.49
VPS53-207ENST00000570510 AP5Z1O43299 807 aa12.01□□□□□ -0.49
VPS53-207ENST00000570510 LARGE1O95461 756 aa12.01□□□□□ -0.49
VPS53-207ENST00000570510 SYPP08247 313 aa12.01□□□□□ -0.49
VPS53-207ENST00000570510 NMT1P30419 496 aaKnown RBP12.01□□□□□ -0.49
VPS53-207ENST00000570510 HOXD12P35452 270 aa12.01□□□□□ -0.49
VPS53-207ENST00000570510 PEX3P56589 373 aa12.01□□□□□ -0.49
VPS53-207ENST00000570510 FAM193AP78312 1265 aa12.01□□□□□ -0.49
VPS53-207ENST00000570510 STRN3Q13033 797 aa12.01□□□□□ -0.49
VPS53-207ENST00000570510 CRY1Q16526 586 aa12.01□□□□□ -0.49
VPS53-207ENST00000570510 SPDYCQ5MJ68 293 aa12.01□□□□□ -0.49
VPS53-207ENST00000570510 TXNDC8Q6A555 127 aa12.01□□□□□ -0.49
VPS53-207ENST00000570510 RASSF3Q86WH2 238 aa12.01□□□□□ -0.49
VPS53-207ENST00000570510 METTL23Q86XA0 190 aa12.01□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms