RNA–Protein interactions for RNA: ENST00000568357.1

VPS39-210, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 593 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-210ENST00000568357 TCEAL4Q96EI5 215 aa16.15■□□□□ 0.18
VPS39-210ENST00000568357 CCDC34Q96HJ3 373 aa16.15■□□□□ 0.18
VPS39-210ENST00000568357 ZNF512Q96ME7 567 aaPredicted RBP16.15■□□□□ 0.18
VPS39-210ENST00000568357 RPP25Q9BUL9 199 aaKnown RBP16.15■□□□□ 0.18
VPS39-210ENST00000568357 DNAJC25Q9H1X3 360 aa16.15■□□□□ 0.18
VPS39-210ENST00000568357 TMLHEQ9NVH6 421 aa16.15■□□□□ 0.18
VPS39-210ENST00000568357 DDX43Q9NXZ2 648 aaKnown RBP16.15■□□□□ 0.18
VPS39-210ENST00000568357 R3HCC1Q9Y3T6 440 aaKnown RBP16.15■□□□□ 0.18
VPS39-210ENST00000568357 YIPF1Q9Y548 306 aa16.15■□□□□ 0.18
VPS39-210ENST00000568357 PCDHA5Q9Y5H7 936 aa16.15■□□□□ 0.18
VPS39-210ENST00000568357 ZFP37Q9Y6Q3 630 aaPredicted RBP16.15■□□□□ 0.18
VPS39-210ENST00000568357 FAM186AA6NE01 2351 aa16.14■□□□□ 0.17
VPS39-210ENST00000568357 LRRIQ3A6PVS8 624 aaPredicted RBP16.14■□□□□ 0.17
VPS39-210ENST00000568357 GABRDO14764 452 aa16.14■□□□□ 0.17
VPS39-210ENST00000568357 NARSO43776 548 aaKnown RBP16.14■□□□□ 0.17
VPS39-210ENST00000568357 CALUO43852 315 aaPredicted RBP16.14■□□□□ 0.17
VPS39-210ENST00000568357 ACAT1P24752 427 aaKnown RBP16.14■□□□□ 0.17
VPS39-210ENST00000568357 NBL1P41271 181 aa16.14■□□□□ 0.17
VPS39-210ENST00000568357 HTR4Q13639 388 aa16.14■□□□□ 0.17
VPS39-210ENST00000568357 CEP135Q66GS9 1140 aa16.14■□□□□ 0.17
VPS39-210ENST00000568357 PARM1Q6UWI2 310 aa16.14■□□□□ 0.17
VPS39-210ENST00000568357 NPAS3Q8IXF0 933 aa16.14■□□□□ 0.17
VPS39-210ENST00000568357 PIAS4Q8N2W9 510 aaPredicted RBP16.14■□□□□ 0.17
VPS39-210ENST00000568357 SPATA20Q8TB22 786 aa16.14■□□□□ 0.17
VPS39-210ENST00000568357 MCRS1Q96EZ8 462 aa16.14■□□□□ 0.17
VPS39-210ENST00000568357 ACBD6Q9BR61 282 aa16.14■□□□□ 0.17
VPS39-210ENST00000568357 CHMP5Q9NZZ3 219 aa16.14■□□□□ 0.17
VPS39-210ENST00000568357 MOSPD3O75425 235 aa16.13■□□□□ 0.17
VPS39-210ENST00000568357 AKAP3O75969 853 aa16.13■□□□□ 0.17
VPS39-210ENST00000568357 C4BPAP04003 597 aaKnown RBP16.13■□□□□ 0.17
VPS39-210ENST00000568357 CEBPBP17676 345 aa16.13■□□□□ 0.17
VPS39-210ENST00000568357 LMO2P25791 158 aa16.13■□□□□ 0.17
VPS39-210ENST00000568357 PRCPP42785 496 aa16.13■□□□□ 0.17
VPS39-210ENST00000568357 ALDH1A3P47895 512 aa16.13■□□□□ 0.17
VPS39-210ENST00000568357 MYL6P60660 151 aa16.13■□□□□ 0.17
VPS39-210ENST00000568357 NFIL3Q16649 462 aa16.13■□□□□ 0.17
VPS39-210ENST00000568357 ZCWPW2Q504Y3 356 aa16.13■□□□□ 0.17
VPS39-210ENST00000568357 C1orf220Q5T0J3 134 aa16.13■□□□□ 0.17
VPS39-210ENST00000568357 IQCEQ6IPM2 695 aa16.13■□□□□ 0.17
VPS39-210ENST00000568357 DPH6Q7L8W6 267 aa16.13■□□□□ 0.17
VPS39-210ENST00000568357 DCP1BQ8IZD4 617 aaKnown RBP16.13■□□□□ 0.17
VPS39-210ENST00000568357 ADGRF2Q8IZF7 708 aa16.13■□□□□ 0.17
VPS39-210ENST00000568357 ELMOD1Q8N336 334 aa16.13■□□□□ 0.17
VPS39-210ENST00000568357 KBTBD7Q8WVZ9 684 aa16.13■□□□□ 0.17
VPS39-210ENST00000568357 FGF14Q92915 247 aa16.13■□□□□ 0.17
VPS39-210ENST00000568357 GSDMAQ96QA5 445 aa16.13■□□□□ 0.17
VPS39-210ENST00000568357 PKMYT1Q99640 499 aa16.13■□□□□ 0.17
VPS39-210ENST00000568357 LRRC3Q9BY71 257 aa16.13■□□□□ 0.17
VPS39-210ENST00000568357 XYLT2Q9H1B5 865 aa16.13■□□□□ 0.17
VPS39-210ENST00000568357 HSFX1Q9UBD0 423 aa16.13■□□□□ 0.17
VPS39-210ENST00000568357 NUMBLQ9Y6R0 609 aa16.13■□□□□ 0.17
VPS39-210ENST00000568357 SMC2O95347 1197 aa16.12■□□□□ 0.17
VPS39-210ENST00000568357 MYL4P12829 197 aa16.12■□□□□ 0.17
VPS39-210ENST00000568357 GJA1P17302 382 aa16.12■□□□□ 0.17
VPS39-210ENST00000568357 NR2F2P24468 414 aa16.12■□□□□ 0.17
VPS39-210ENST00000568357 LHX1P48742 406 aa16.12■□□□□ 0.17
VPS39-210ENST00000568357 TUFMP49411 452 aaKnown RBP16.12■□□□□ 0.17
VPS39-210ENST00000568357 EPHB3P54753 998 aa16.12■□□□□ 0.17
VPS39-210ENST00000568357 EPHA5P54756 1037 aa16.12■□□□□ 0.17
VPS39-210ENST00000568357 PLD1Q13393 1074 aa16.12■□□□□ 0.17
VPS39-210ENST00000568357 ADAM9Q13443 819 aa16.12■□□□□ 0.17
VPS39-210ENST00000568357 CCDC142Q17RM4 750 aa16.12■□□□□ 0.17
VPS39-210ENST00000568357 WDR72Q3MJ13 1102 aa16.12■□□□□ 0.17
VPS39-210ENST00000568357 MGAT5BQ3V5L5 792 aa16.12■□□□□ 0.17
VPS39-210ENST00000568357 CYP4A22Q5TCH4 519 aa16.12■□□□□ 0.17
VPS39-210ENST00000568357 ZNF658Q5TYW1 1059 aaPredicted RBP16.12■□□□□ 0.17
VPS39-210ENST00000568357 TDRD10Q5VZ19 366 aaKnown RBP16.12■□□□□ 0.17
VPS39-210ENST00000568357 PDZD4Q76G19 769 aaPredicted RBP16.12■□□□□ 0.17
VPS39-210ENST00000568357 DNAJB7Q7Z6W7 309 aaPredicted RBP16.12■□□□□ 0.17
VPS39-210ENST00000568357 ELOA2Q8IYF1 753 aaPredicted RBP16.12■□□□□ 0.17
VPS39-210ENST00000568357 TMEM105Q8N8V8 129 aa16.12■□□□□ 0.17
VPS39-210ENST00000568357 SPATA18Q8TC71 538 aa16.12■□□□□ 0.17
VPS39-210ENST00000568357 TMC2Q8TDI7 906 aa16.12■□□□□ 0.17
VPS39-210ENST00000568357 C2orf15Q8WU43 125 aaKnown RBP16.12■□□□□ 0.17
VPS39-210ENST00000568357 SMARCE1Q969G3 411 aa16.12■□□□□ 0.17
VPS39-210ENST00000568357 NXPE3Q969Y0 559 aa16.12■□□□□ 0.17
VPS39-210ENST00000568357 ZSWIM3Q96MP5 696 aa16.12■□□□□ 0.17
VPS39-210ENST00000568357 MMS19Q96T76 1030 aa16.12■□□□□ 0.17
VPS39-210ENST00000568357 SEPT5Q99719 369 aaPredicted RBP16.12■□□□□ 0.17
VPS39-210ENST00000568357 RMND1Q9NWS8 449 aa16.12■□□□□ 0.17
VPS39-210ENST00000568357 ABI2Q9NYB9 513 aaPredicted RBP16.12■□□□□ 0.17
VPS39-210ENST00000568357 GTF3C4Q9UKN8 822 aa16.12■□□□□ 0.17
VPS39-210ENST00000568357 DUSP12Q9UNI6 340 aa16.12■□□□□ 0.17
VPS39-210ENST00000568357 FRMD4BQ9Y2L6 1034 aa16.12■□□□□ 0.17
VPS39-210ENST00000568357 DOCK6Q96HP0 2047 aa16.12■□□□□ 0.17
VPS39-210ENST00000568357 DNAH14Q0VDD8 3507 aa16.12■□□□□ 0.17
VPS39-210ENST00000568357 VPS13AQ96RL7 3174 aa16.12■□□□□ 0.17
VPS39-210ENST00000568357 RIF1Q5UIP0 2472 aaKnown RBP16.11■□□□□ 0.17
VPS39-210ENST00000568357 MED19A0JLT2 244 aaPredicted RBP16.11■□□□□ 0.17
VPS39-210ENST00000568357 MYBPHLA2RUH7 354 aa16.11■□□□□ 0.17
VPS39-210ENST00000568357 ZNF197O14709 1029 aa16.11■□□□□ 0.17
VPS39-210ENST00000568357 PHACTR2O75167 634 aa16.11■□□□□ 0.17
VPS39-210ENST00000568357 ATP2C2O75185 946 aa16.11■□□□□ 0.17
VPS39-210ENST00000568357 MICAL2O94851 1124 aa16.11■□□□□ 0.17
VPS39-210ENST00000568357 VNN1O95497 513 aa16.11■□□□□ 0.17
VPS39-210ENST00000568357 HAPLN1P10915 354 aaPredicted RBP16.11■□□□□ 0.17
VPS39-210ENST00000568357 ATF6P18850 670 aa16.11■□□□□ 0.17
VPS39-210ENST00000568357 ANP32AP39687 249 aaKnown RBP16.11■□□□□ 0.17
VPS39-210ENST00000568357 AP3M2P53677 418 aa16.11■□□□□ 0.17
VPS39-210ENST00000568357 MYL7Q01449 175 aa16.11■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms