RNA–Protein interactions for RNA: ENST00000565140.5

CLN3-214, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,225 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-214ENST00000565140 DDX43Q9NXZ2 648 aaKnown RBP19.76■□□□□ 0.75
CLN3-214ENST00000565140 HCRTO43612 131 aa19.75■□□□□ 0.75
CLN3-214ENST00000565140 EXOC3O60645 756 aa19.75■□□□□ 0.75
CLN3-214ENST00000565140 ATF6P18850 670 aa19.75■□□□□ 0.75
CLN3-214ENST00000565140 TNNI1P19237 187 aa19.75■□□□□ 0.75
CLN3-214ENST00000565140 FCARP24071 287 aa19.75■□□□□ 0.75
CLN3-214ENST00000565140 ACAT1P24752 427 aaKnown RBP19.75■□□□□ 0.75
CLN3-214ENST00000565140 TUFMP49411 452 aaKnown RBP19.75■□□□□ 0.75
CLN3-214ENST00000565140 NHLH1Q02575 133 aa19.75■□□□□ 0.75
CLN3-214ENST00000565140 DPYDQ12882 1025 aa19.75■□□□□ 0.75
CLN3-214ENST00000565140 LIMS2Q7Z4I7 341 aa19.75■□□□□ 0.75
CLN3-214ENST00000565140 TMEM86AQ8N2M4 240 aa19.75■□□□□ 0.75
CLN3-214ENST00000565140 LEMD2Q8NC56 503 aa19.75■□□□□ 0.75
CLN3-214ENST00000565140 PSMG2Q969U7 264 aa19.75■□□□□ 0.75
CLN3-214ENST00000565140 FNBP1Q96RU3 617 aa19.75■□□□□ 0.75
CLN3-214ENST00000565140 CGRRF1Q99675 332 aa19.75■□□□□ 0.75
CLN3-214ENST00000565140 SEPT5Q99719 369 aaPredicted RBP19.75■□□□□ 0.75
CLN3-214ENST00000565140 LPIN3Q9BQK8 851 aa19.75■□□□□ 0.75
CLN3-214ENST00000565140 ZNF334Q9HCZ1 680 aaPredicted RBP19.75■□□□□ 0.75
CLN3-214ENST00000565140 DMAC2Q9NW81 257 aa19.75■□□□□ 0.75
CLN3-214ENST00000565140 ZNF638Q14966 1978 aaKnown RBP19.75■□□□□ 0.75
CLN3-214ENST00000565140 OBSL1O75147 1896 aa19.75■□□□□ 0.75
CLN3-214ENST00000565140 GABRDO14764 452 aa19.74■□□□□ 0.75
CLN3-214ENST00000565140 ECI2O75521 394 aa19.74■□□□□ 0.75
CLN3-214ENST00000565140 HAPLN1P10915 354 aaPredicted RBP19.74■□□□□ 0.75
CLN3-214ENST00000565140 CASP4P49662 377 aa19.74■□□□□ 0.75
CLN3-214ENST00000565140 NUCB2P80303 420 aa19.74■□□□□ 0.75
CLN3-214ENST00000565140 MYO1EQ12965 1108 aa19.74■□□□□ 0.75
CLN3-214ENST00000565140 TEAD2Q15562 447 aa19.74■□□□□ 0.75
CLN3-214ENST00000565140 MGAT5BQ3V5L5 792 aa19.74■□□□□ 0.75
CLN3-214ENST00000565140 DCP1BQ8IZD4 617 aaKnown RBP19.74■□□□□ 0.75
CLN3-214ENST00000565140 ADGRF2Q8IZF7 708 aa19.74■□□□□ 0.75
CLN3-214ENST00000565140 TOP6BLQ8N6T0 577 aa19.74■□□□□ 0.75
CLN3-214ENST00000565140 GOLGA5Q8TBA6 731 aa19.74■□□□□ 0.75
CLN3-214ENST00000565140 C2orf15Q8WU43 125 aaKnown RBP19.74■□□□□ 0.75
CLN3-214ENST00000565140 ASB16Q96NS5 453 aa19.74■□□□□ 0.75
CLN3-214ENST00000565140 PKMYT1Q99640 499 aa19.74■□□□□ 0.75
CLN3-214ENST00000565140 ACBD6Q9BR61 282 aa19.74■□□□□ 0.75
CLN3-214ENST00000565140 ABI2Q9NYB9 513 aaPredicted RBP19.74■□□□□ 0.75
CLN3-214ENST00000565140 R3HCC1Q9Y3T6 440 aaKnown RBP19.74■□□□□ 0.75
CLN3-214ENST00000565140 ASB3Q9Y575 518 aa19.74■□□□□ 0.75
CLN3-214ENST00000565140 PTPRDP23468 1912 aa19.74■□□□□ 0.75
CLN3-214ENST00000565140 GREB1Q4ZG55 1949 aa19.74■□□□□ 0.75
CLN3-214ENST00000565140 MIA3Q5JRA6 1907 aa19.74■□□□□ 0.75
CLN3-214ENST00000565140 NUP210Q8TEM1 1887 aaPredicted RBP19.73■□□□□ 0.75
CLN3-214ENST00000565140 A0A1W2PRU2 124 aa19.73■□□□□ 0.75
CLN3-214ENST00000565140 RHOBTB3O94955 611 aa19.73■□□□□ 0.75
CLN3-214ENST00000565140 AOC1P19801 751 aa19.73■□□□□ 0.75
CLN3-214ENST00000565140 MYL7Q01449 175 aa19.73■□□□□ 0.75
CLN3-214ENST00000565140 TSPY1Q01534 308 aa19.73■□□□□ 0.75
CLN3-214ENST00000565140 SMARCB1Q12824 385 aa19.73■□□□□ 0.75
CLN3-214ENST00000565140 CCDC142Q17RM4 750 aa19.73■□□□□ 0.75
CLN3-214ENST00000565140 GAREM2Q75VX8 874 aa19.73■□□□□ 0.75
CLN3-214ENST00000565140 SLC9A9Q8IVB4 645 aa19.73■□□□□ 0.75
CLN3-214ENST00000565140 SPPL2BQ8TCT7 592 aa19.73■□□□□ 0.75
CLN3-214ENST00000565140 GIPC2Q8TF65 315 aa19.73■□□□□ 0.75
CLN3-214ENST00000565140 TMEM174Q8WUU8 243 aa19.73■□□□□ 0.75
CLN3-214ENST00000565140 KBTBD7Q8WVZ9 684 aa19.73■□□□□ 0.75
CLN3-214ENST00000565140 ELSPBP1Q96BH3 223 aa19.73■□□□□ 0.75
CLN3-214ENST00000565140 PI4K2AQ9BTU6 479 aa19.73■□□□□ 0.75
CLN3-214ENST00000565140 TBC1D17Q9HA65 648 aa19.73■□□□□ 0.75
CLN3-214ENST00000565140 ARHGEF3Q9NR81 526 aa19.73■□□□□ 0.75
CLN3-214ENST00000565140 TICRRQ7Z2Z1 1910 aa19.72■□□□□ 0.75
CLN3-214ENST00000565140 F5P12259 2224 aa19.72■□□□□ 0.75
CLN3-214ENST00000565140 WDR87Q6ZQQ6 2873 aa19.72■□□□□ 0.75
CLN3-214ENST00000565140 STK25O00506 426 aa19.72■□□□□ 0.75
CLN3-214ENST00000565140 PDXKO00764 312 aa19.72■□□□□ 0.75
CLN3-214ENST00000565140 PRPF40AO75400 957 aaKnown RBP19.72■□□□□ 0.75
CLN3-214ENST00000565140 LMO2P25791 158 aa19.72■□□□□ 0.75
CLN3-214ENST00000565140 SNW1Q13573 536 aaKnown RBP19.72■□□□□ 0.75
CLN3-214ENST00000565140 INTS6LQ5JSJ4 861 aaKnown RBP19.72■□□□□ 0.75
CLN3-214ENST00000565140 STXBP5Q5T5C0 1151 aa19.72■□□□□ 0.75
CLN3-214ENST00000565140 DPH6Q7L8W6 267 aa19.72■□□□□ 0.75
CLN3-214ENST00000565140 ZSCAN18Q8TBC5 510 aaPredicted RBP19.72■□□□□ 0.75
CLN3-214ENST00000565140 SPATA18Q8TC71 538 aa19.72■□□□□ 0.75
CLN3-214ENST00000565140 FAM200AQ8TCP9 573 aa19.72■□□□□ 0.75
CLN3-214ENST00000565140 SMARCD2Q92925 531 aa19.72■□□□□ 0.75
CLN3-214ENST00000565140 PRRX2Q99811 253 aa19.72■□□□□ 0.75
CLN3-214ENST00000565140 ZFP14Q9HCL3 533 aa19.72■□□□□ 0.75
CLN3-214ENST00000565140 GTF3C4Q9UKN8 822 aa19.72■□□□□ 0.75
CLN3-214ENST00000565140 PCDHB5Q9Y5E4 795 aa19.72■□□□□ 0.75
CLN3-214ENST00000565140 GALR2O43603 387 aaPredicted RBP19.71■□□□□ 0.75
CLN3-214ENST00000565140 ATP2C2O75185 946 aa19.71■□□□□ 0.75
CLN3-214ENST00000565140 NR3C1P04150 777 aa19.71■□□□□ 0.75
CLN3-214ENST00000565140 VIPR2P41587 438 aa19.71■□□□□ 0.75
CLN3-214ENST00000565140 LHX1P48742 406 aa19.71■□□□□ 0.75
CLN3-214ENST00000565140 GPR15P49685 360 aa19.71■□□□□ 0.75
CLN3-214ENST00000565140 PTPN5P54829 565 aa19.71■□□□□ 0.75
CLN3-214ENST00000565140 ITIH5Q86UX2 942 aa19.71■□□□□ 0.75
CLN3-214ENST00000565140 GPIHBP1Q8IV16 184 aa19.71■□□□□ 0.75
CLN3-214ENST00000565140 FMR1NBQ8N0W7 255 aaPredicted RBP19.71■□□□□ 0.75
CLN3-214ENST00000565140 PARD3BQ8TEW8 1205 aa19.71■□□□□ 0.75
CLN3-214ENST00000565140 MKNK1Q9BUB5 465 aa19.71■□□□□ 0.75
CLN3-214ENST00000565140 TRPV4Q9HBA0 871 aa19.71■□□□□ 0.75
CLN3-214ENST00000565140 MAPK8IP1Q9UQF2 711 aa19.71■□□□□ 0.75
CLN3-214ENST00000565140 MYO15AQ9UKN7 3530 aa19.71■□□□□ 0.75
CLN3-214ENST00000565140 NCANO14594 1321 aa19.71■□□□□ 0.75
CLN3-214ENST00000565140 CACNA1IQ9P0X4 2223 aa19.71■□□□□ 0.75
CLN3-214ENST00000565140 ANAPC1Q9H1A4 1944 aa19.7■□□□□ 0.74
CLN3-214ENST00000565140 DMDP11532 3685 aa19.7■□□□□ 0.74
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms