RNA–Protein interactions for RNA: ENST00000563112.1

CLK3-210, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 665 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-210ENST00000563112 GRAMD1CQ8IYS0 662 aa18.11■□□□□ 0.49
CLK3-210ENST00000563112 PDCL2Q8N4E4 241 aa18.11■□□□□ 0.49
CLK3-210ENST00000563112 TTC9BQ8N6N2 239 aa18.11■□□□□ 0.49
CLK3-210ENST00000563112 TOP6BLQ8N6T0 577 aa18.11■□□□□ 0.49
CLK3-210ENST00000563112 GOLGA5Q8TBA6 731 aa18.11■□□□□ 0.49
CLK3-210ENST00000563112 SHKBP1Q8TBC3 707 aa18.11■□□□□ 0.49
CLK3-210ENST00000563112 ZSCAN18Q8TBC5 510 aaPredicted RBP18.11■□□□□ 0.49
CLK3-210ENST00000563112 SPATA18Q8TC71 538 aa18.11■□□□□ 0.49
CLK3-210ENST00000563112 PAGE5Q96GU1 130 aa18.11■□□□□ 0.49
CLK3-210ENST00000563112 FNBP1Q96RU3 617 aa18.11■□□□□ 0.49
CLK3-210ENST00000563112 ACBD6Q9BR61 282 aa18.11■□□□□ 0.49
CLK3-210ENST00000563112 TRMT61BQ9BVS5 477 aaKnown RBP18.11■□□□□ 0.49
CLK3-210ENST00000563112 LRRC3Q9BY71 257 aa18.11■□□□□ 0.49
CLK3-210ENST00000563112 ATXN3LQ9H3M9 355 aa18.11■□□□□ 0.49
CLK3-210ENST00000563112 BRD9Q9H8M2 597 aa18.11■□□□□ 0.49
CLK3-210ENST00000563112 EXOC1Q9NV70 894 aa18.11■□□□□ 0.49
CLK3-210ENST00000563112 FAM86C1Q9NVL1 165 aa18.11■□□□□ 0.49
CLK3-210ENST00000563112 ABI2Q9NYB9 513 aaPredicted RBP18.11■□□□□ 0.49
CLK3-210ENST00000563112 L1RE1Q9UN81 338 aa18.11■□□□□ 0.49
CLK3-210ENST00000563112 ZDHHC9Q9Y397 364 aa18.11■□□□□ 0.49
CLK3-210ENST00000563112 ZFHX2Q9C0A1 2572 aaPredicted RBP18.11■□□□□ 0.49
CLK3-210ENST00000563112 ACTN4O43707 911 aaKnown RBP18.1■□□□□ 0.49
CLK3-210ENST00000563112 MYL1P05976 194 aa18.1■□□□□ 0.49
CLK3-210ENST00000563112 DLATP10515 647 aaKnown RBP18.1■□□□□ 0.49
CLK3-210ENST00000563112 HAPLN1P10915 354 aaPredicted RBP18.1■□□□□ 0.49
CLK3-210ENST00000563112 TNNI1P19237 187 aa18.1■□□□□ 0.49
CLK3-210ENST00000563112 FCARP24071 287 aa18.1■□□□□ 0.49
CLK3-210ENST00000563112 LHX1P48742 406 aa18.1■□□□□ 0.49
CLK3-210ENST00000563112 PSMD2Q13200 908 aa18.1■□□□□ 0.49
CLK3-210ENST00000563112 BECN1Q14457 450 aa18.1■□□□□ 0.49
CLK3-210ENST00000563112 KNOP1Q1ED39 458 aaKnown RBP18.1■□□□□ 0.49
CLK3-210ENST00000563112 DPH6Q7L8W6 267 aa18.1■□□□□ 0.49
CLK3-210ENST00000563112 TMC8Q8IU68 726 aa18.1■□□□□ 0.49
CLK3-210ENST00000563112 OR5B17Q8NGF7 314 aa18.1■□□□□ 0.49
CLK3-210ENST00000563112 CXorf38Q8TB03 319 aa18.1■□□□□ 0.49
CLK3-210ENST00000563112 DEPDC1BQ8WUY9 529 aa18.1■□□□□ 0.49
CLK3-210ENST00000563112 DNASE1L2Q92874 299 aa18.1■□□□□ 0.49
CLK3-210ENST00000563112 IRF7Q92985 503 aa18.1■□□□□ 0.49
CLK3-210ENST00000563112 HPDLQ96IR7 371 aa18.1■□□□□ 0.49
CLK3-210ENST00000563112 ZSWIM3Q96MP5 696 aa18.1■□□□□ 0.49
CLK3-210ENST00000563112 GCNAQ96QF7 691 aa18.1■□□□□ 0.49
CLK3-210ENST00000563112 SCAND2PQ9GZW5 306 aaPredicted RBP18.1■□□□□ 0.49
CLK3-210ENST00000563112 TRPV4Q9HBA0 871 aa18.1■□□□□ 0.49
CLK3-210ENST00000563112 DDX43Q9NXZ2 648 aaKnown RBP18.1■□□□□ 0.49
CLK3-210ENST00000563112 SIX4Q9UIU6 781 aa18.1■□□□□ 0.49
CLK3-210ENST00000563112 KANSL1LA0AUZ9 987 aa18.09■□□□□ 0.49
CLK3-210ENST00000563112 EXOC3O60645 756 aa18.09■□□□□ 0.49
CLK3-210ENST00000563112 PSMC3P17980 439 aa18.09■□□□□ 0.49
CLK3-210ENST00000563112 GABRR2P28476 465 aa18.09■□□□□ 0.49
CLK3-210ENST00000563112 PCSK1P29120 753 aa18.09■□□□□ 0.49
CLK3-210ENST00000563112 SYKP43405 635 aa18.09■□□□□ 0.49
CLK3-210ENST00000563112 GRM2Q14416 872 aa18.09■□□□□ 0.49
CLK3-210ENST00000563112 PSMD6Q15008 389 aa18.09■□□□□ 0.49
CLK3-210ENST00000563112 C12orf56Q8IXR9 622 aa18.09■□□□□ 0.49
CLK3-210ENST00000563112 YAF2Q8IY57 180 aa18.09■□□□□ 0.49
CLK3-210ENST00000563112 ADGRF2Q8IZF7 708 aa18.09■□□□□ 0.49
CLK3-210ENST00000563112 PJA1Q8NG27 643 aa18.09■□□□□ 0.49
CLK3-210ENST00000563112 CCDC47Q96A33 483 aaKnown RBP18.09■□□□□ 0.49
CLK3-210ENST00000563112 FAM84AQ96KN4 292 aa18.09■□□□□ 0.49
CLK3-210ENST00000563112 NELL2Q99435 816 aa18.09■□□□□ 0.49
CLK3-210ENST00000563112 PHOX2BQ99453 314 aa18.09■□□□□ 0.49
CLK3-210ENST00000563112 LPIN3Q9BQK8 851 aa18.09■□□□□ 0.49
CLK3-210ENST00000563112 PTPRJQ12913 1337 aa18.08■□□□□ 0.49
CLK3-210ENST00000563112 NRG2O14511 850 aaPredicted RBP18.08■□□□□ 0.48
CLK3-210ENST00000563112 DPYSL4O14531 572 aa18.08■□□□□ 0.48
CLK3-210ENST00000563112 KLRC4O43908 158 aa18.08■□□□□ 0.48
CLK3-210ENST00000563112 DCNP07585 359 aaKnown RBP18.08■□□□□ 0.48
CLK3-210ENST00000563112 CDC25CP30307 473 aa18.08■□□□□ 0.48
CLK3-210ENST00000563112 VIPR2P41587 438 aa18.08■□□□□ 0.48
CLK3-210ENST00000563112 CDR1P51861 262 aa18.08■□□□□ 0.48
CLK3-210ENST00000563112 CYP24A1Q07973 514 aa18.08■□□□□ 0.48
CLK3-210ENST00000563112 UBXN2BQ14CS0 331 aa18.08■□□□□ 0.48
CLK3-210ENST00000563112 ANGPT1Q15389 498 aa18.08■□□□□ 0.48
CLK3-210ENST00000563112 INTS6LQ5JSJ4 861 aaKnown RBP18.08■□□□□ 0.48
CLK3-210ENST00000563112 TRAPPC11Q7Z392 1133 aa18.08■□□□□ 0.48
CLK3-210ENST00000563112 GIPC2Q8TF65 315 aa18.08■□□□□ 0.48
CLK3-210ENST00000563112 CCDC127Q96BQ5 260 aa18.08■□□□□ 0.48
CLK3-210ENST00000563112 CGRRF1Q99675 332 aa18.08■□□□□ 0.48
CLK3-210ENST00000563112 PI4K2AQ9BTU6 479 aa18.08■□□□□ 0.48
CLK3-210ENST00000563112 DDX23Q9BUQ8 820 aaKnown RBP18.08■□□□□ 0.48
CLK3-210ENST00000563112 FOXQ1Q9C009 403 aa18.08■□□□□ 0.48
CLK3-210ENST00000563112 ZNF334Q9HCZ1 680 aaPredicted RBP18.08■□□□□ 0.48
CLK3-210ENST00000563112 MRPS17Q9Y2R5 130 aaKnown RBP18.08■□□□□ 0.48
CLK3-210ENST00000563112 ZNF263O14978 683 aa18.07■□□□□ 0.48
CLK3-210ENST00000563112 ATF6P18850 670 aa18.07■□□□□ 0.48
CLK3-210ENST00000563112 ACAT1P24752 427 aaKnown RBP18.07■□□□□ 0.48
CLK3-210ENST00000563112 GDI1P31150 447 aa18.07■□□□□ 0.48
CLK3-210ENST00000563112 RPL10AP62906 217 aaKnown RBP18.07■□□□□ 0.48
CLK3-210ENST00000563112 SOWAHAQ2M3V2 549 aa18.07■□□□□ 0.48
CLK3-210ENST00000563112 KMT5BQ4FZB7 885 aa18.07■□□□□ 0.48
CLK3-210ENST00000563112 GPR158Q5T848 1215 aa18.07■□□□□ 0.48
CLK3-210ENST00000563112 VITQ6UXI7 678 aa18.07■□□□□ 0.48
CLK3-210ENST00000563112 TPRG1Q6ZUI0 275 aa18.07■□□□□ 0.48
CLK3-210ENST00000563112 GAREM2Q75VX8 874 aa18.07■□□□□ 0.48
CLK3-210ENST00000563112 MFSD6LQ8IWD5 586 aa18.07■□□□□ 0.48
CLK3-210ENST00000563112 MMS19Q96T76 1030 aa18.07■□□□□ 0.48
CLK3-210ENST00000563112 BCO2Q9BYV7 579 aa18.07■□□□□ 0.48
CLK3-210ENST00000563112 OSBPL6Q9BZF3 934 aa18.07■□□□□ 0.48
CLK3-210ENST00000563112 ZMYM5Q9UJ78 669 aa18.07■□□□□ 0.48
CLK3-210ENST00000563112 HPSEQ9Y251 543 aa18.07■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 90.9 ms