RNA–Protein interactions for RNA: ENST00000562258.5

VPS39-205, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 4,160 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-205ENST00000562258 BTBD6Q96KE9 485 aa9.74□□□□□ -0.85
VPS39-205ENST00000562258 PLEKHA5Q9HAU0 1116 aa9.74□□□□□ -0.85
VPS39-205ENST00000562258 TSPAN16Q9UKR8 245 aa9.74□□□□□ -0.85
VPS39-205ENST00000562258 SCN9AQ15858 1988 aa9.74□□□□□ -0.85
VPS39-205ENST00000562258 PGRMC1O00264 195 aaKnown RBP9.74□□□□□ -0.85
VPS39-205ENST00000562258 HOXC6P09630 235 aa9.74□□□□□ -0.85
VPS39-205ENST00000562258 CCDC130P13994 396 aa9.74□□□□□ -0.85
VPS39-205ENST00000562258 CDC25BP30305 580 aa9.74□□□□□ -0.85
VPS39-205ENST00000562258 HARS2P49590 506 aaKnown RBP9.74□□□□□ -0.85
VPS39-205ENST00000562258 TKTL1P51854 596 aa9.74□□□□□ -0.85
VPS39-205ENST00000562258 RPL10AP62906 217 aaKnown RBP9.74□□□□□ -0.85
VPS39-205ENST00000562258 BBS9Q3SYG4 887 aa9.74□□□□□ -0.85
VPS39-205ENST00000562258 P3H4Q92791 437 aa9.74□□□□□ -0.85
VPS39-205ENST00000562258 IL17RAQ96F46 866 aa9.74□□□□□ -0.85
VPS39-205ENST00000562258 RPRD1AQ96P16 312 aaPredicted RBP9.74□□□□□ -0.85
VPS39-205ENST00000562258 GTF2IRD1Q9UHL9 959 aa9.74□□□□□ -0.85
VPS39-205ENST00000562258 JRKLQ9Y4A0 524 aa9.74□□□□□ -0.85
VPS39-205ENST00000562258 ADGRG1Q9Y653 693 aa9.74□□□□□ -0.85
VPS39-205ENST00000562258 SMIM28A0A1B0GU29 152 aa9.74□□□□□ -0.85
VPS39-205ENST00000562258 SLC12A8A0AV02 714 aa9.74□□□□□ -0.85
VPS39-205ENST00000562258 GOLGA8MH3BSY2 632 aa9.74□□□□□ -0.85
VPS39-205ENST00000562258 RTN2O75298 545 aa9.74□□□□□ -0.85
VPS39-205ENST00000562258 CSF2RAP15509 400 aa9.74□□□□□ -0.85
VPS39-205ENST00000562258 CYP11B1P15538 503 aa9.74□□□□□ -0.85
VPS39-205ENST00000562258 RPL17P18621 184 aaKnown RBP9.74□□□□□ -0.85
VPS39-205ENST00000562258 TM4SF4P48230 202 aa9.74□□□□□ -0.85
VPS39-205ENST00000562258 TPI1P60174 286 aa9.74□□□□□ -0.85
VPS39-205ENST00000562258 SLC7A5Q01650 507 aa9.74□□□□□ -0.85
VPS39-205ENST00000562258 PRPSAP1Q14558 356 aa9.74□□□□□ -0.85
VPS39-205ENST00000562258 SLC18A3Q16572 532 aa9.74□□□□□ -0.85
VPS39-205ENST00000562258 HP1BP3Q5SSJ5 553 aaPredicted RBP9.74□□□□□ -0.85
VPS39-205ENST00000562258 ZNF467Q7Z7K2 595 aaPredicted RBP9.74□□□□□ -0.85
VPS39-205ENST00000562258 ARHGEF19Q8IW93 802 aa9.74□□□□□ -0.85
VPS39-205ENST00000562258 ZNF606Q8WXB4 792 aa9.74□□□□□ -0.85
VPS39-205ENST00000562258 NCAPGQ9BPX3 1015 aa9.74□□□□□ -0.85
VPS39-205ENST00000562258 CCDC68Q9H2F9 335 aa9.74□□□□□ -0.85
VPS39-205ENST00000562258 SP110Q9HB58 689 aa9.74□□□□□ -0.85
VPS39-205ENST00000562258 FLRT1Q9NZU1 646 aa9.74□□□□□ -0.85
VPS39-205ENST00000562258 PCDHB5Q9Y5E4 795 aa9.74□□□□□ -0.85
VPS39-205ENST00000562258 SPTBN2O15020 2390 aa9.73□□□□□ -0.85
VPS39-205ENST00000562258 TTLL13PA6NNM8 815 aa9.73□□□□□ -0.85
VPS39-205ENST00000562258 H0YHG0 523 aa9.73□□□□□ -0.85
VPS39-205ENST00000562258 TGFB1I1O43294 461 aa9.73□□□□□ -0.85
VPS39-205ENST00000562258 RGS20O76081 388 aa9.73□□□□□ -0.85
VPS39-205ENST00000562258 C22orf31O95567 290 aa9.73□□□□□ -0.85
VPS39-205ENST00000562258 EPHB2P29323 1055 aa9.73□□□□□ -0.85
VPS39-205ENST00000562258 NDUFV1P49821 464 aa9.73□□□□□ -0.85
VPS39-205ENST00000562258 MAP3K10Q02779 954 aa9.73□□□□□ -0.85
VPS39-205ENST00000562258 TFDP2Q14188 446 aa9.73□□□□□ -0.85
VPS39-205ENST00000562258 ZRSR2Q15696 482 aaKnown RBP9.73□□□□□ -0.85
VPS39-205ENST00000562258 CCDC85BQ15834 202 aaPredicted RBP9.73□□□□□ -0.85
VPS39-205ENST00000562258 TAPT1Q6NXT6 567 aa9.73□□□□□ -0.85
VPS39-205ENST00000562258 ATAD1Q8NBU5 361 aa9.73□□□□□ -0.85
VPS39-205ENST00000562258 SLC35G2Q8TBE7 412 aa9.73□□□□□ -0.85
VPS39-205ENST00000562258 TTC25Q96NG3 672 aa9.73□□□□□ -0.85
VPS39-205ENST00000562258 MINDY3Q9H8M7 445 aa9.73□□□□□ -0.85
VPS39-205ENST00000562258 ZCCHC17Q9NP64 241 aaKnown RBP9.73□□□□□ -0.85
VPS39-205ENST00000562258 TUBGCP4Q9UGJ1 667 aa9.73□□□□□ -0.85
VPS39-205ENST00000562258 IP6K2Q9UHH9 426 aa9.73□□□□□ -0.85
VPS39-205ENST00000562258 ITGA11Q9UKX5 1188 aa9.73□□□□□ -0.85
VPS39-205ENST00000562258 DAAM1Q9Y4D1 1078 aa9.73□□□□□ -0.85
VPS39-205ENST00000562258 P4HA2O15460 535 aa9.73□□□□□ -0.85
VPS39-205ENST00000562258 LYPLA2O95372 231 aa9.73□□□□□ -0.85
VPS39-205ENST00000562258 SARSP49591 514 aaKnown RBP9.73□□□□□ -0.85
VPS39-205ENST00000562258 PPIGQ13427 754 aaKnown RBP eCLIP9.73□□□□□ -0.854e-6■■■■□ 22.8
VPS39-205ENST00000562258 PSMD6Q15008 389 aa9.73□□□□□ -0.85
VPS39-205ENST00000562258 C12orf29Q8N999 325 aa9.73□□□□□ -0.85
VPS39-205ENST00000562258 USP38Q8NB14 1042 aa9.73□□□□□ -0.85
VPS39-205ENST00000562258 RFFLQ8WZ73 363 aa9.73□□□□□ -0.85
VPS39-205ENST00000562258 CORO1BQ9BR76 489 aa9.73□□□□□ -0.85
VPS39-205ENST00000562258 RAB17Q9H0T7 212 aa9.73□□□□□ -0.85
VPS39-205ENST00000562258 MUC3BQ9H195 1237 aa9.73□□□□□ -0.85
VPS39-205ENST00000562258 LOC102724159A0A0B4J2E5 919 aa9.73□□□□□ -0.85
VPS39-205ENST00000562258 FAM47DPA6NHR8 397 aa9.73□□□□□ -0.85
VPS39-205ENST00000562258 LGR5O75473 907 aa9.73□□□□□ -0.85
VPS39-205ENST00000562258 VDRP11473 427 aa9.73□□□□□ -0.85
VPS39-205ENST00000562258 C2orf54Q08AI8 447 aa9.73□□□□□ -0.85
VPS39-205ENST00000562258 PLD1Q13393 1074 aa9.73□□□□□ -0.85
VPS39-205ENST00000562258 PWP2Q15269 919 aaKnown RBP9.73□□□□□ -0.85
VPS39-205ENST00000562258 ARHGAP15Q53QZ3 475 aa9.73□□□□□ -0.85
VPS39-205ENST00000562258 PPM1LQ5SGD2 360 aa9.73□□□□□ -0.85
VPS39-205ENST00000562258 LEKR1Q6ZMV7 388 aa9.73□□□□□ -0.85
VPS39-205ENST00000562258 PID1Q7Z2X4 250 aa9.73□□□□□ -0.85
VPS39-205ENST00000562258 C1orf54Q8WWF1 131 aa9.73□□□□□ -0.85
VPS39-205ENST00000562258 B3GALT6Q96L58 329 aa9.73□□□□□ -0.85
VPS39-205ENST00000562258 EPAS1Q99814 870 aa9.73□□□□□ -0.85
VPS39-205ENST00000562258 NIFKQ9BYG3 293 aaKnown RBP9.73□□□□□ -0.85
VPS39-205ENST00000562258 CIPCQ9C0C6 399 aa9.73□□□□□ -0.85
VPS39-205ENST00000562258 RNF39Q9H2S5 420 aa9.73□□□□□ -0.85
VPS39-205ENST00000562258 TLE6Q9H808 572 aa9.73□□□□□ -0.85
VPS39-205ENST00000562258 BARX2Q9UMQ3 279 aaPredicted RBP9.73□□□□□ -0.85
VPS39-205ENST00000562258 EP400Q96L91 3159 aa9.73□□□□□ -0.85
VPS39-205ENST00000562258 SF3B1O75533 1304 aaKnown RBP eCLIP9.72□□□□□ -0.85
VPS39-205ENST00000562258 HGSO14964 777 aaPredicted RBP9.72□□□□□ -0.85
VPS39-205ENST00000562258 RRM1P23921 792 aa9.72□□□□□ -0.85
VPS39-205ENST00000562258 ADIGQ0VDE8 80 aa9.72□□□□□ -0.85
VPS39-205ENST00000562258 SH3RF1Q7Z6J0 888 aa9.72□□□□□ -0.85
VPS39-205ENST00000562258 DDI1Q8WTU0 396 aa9.72□□□□□ -0.85
VPS39-205ENST00000562258 ERGIC2Q96RQ1 377 aa9.72□□□□□ -0.85
VPS39-205ENST00000562258 CDHR5Q9HBB8 845 aa9.72□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 42.9 ms