RNA–Protein interactions for RNA: ENST00000560299.1

SPG11-221, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 3

Gene SPG11, Length 437 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-221ENST00000560299 ELAVL2Q12926 359 aaKnown RBP6.85□□□□□ -1.31
SPG11-221ENST00000560299 NAB2Q15742 525 aa6.85□□□□□ -1.31
SPG11-221ENST00000560299 CLLU1OSQ5K130 101 aa6.85□□□□□ -1.31
SPG11-221ENST00000560299 CCDC122Q5T0U0 273 aa6.85□□□□□ -1.31
SPG11-221ENST00000560299 E4F1Q66K89 784 aaPredicted RBP6.85□□□□□ -1.31
SPG11-221ENST00000560299 ALKBH5Q6P6C2 394 aaKnown RBP6.85□□□□□ -1.31
SPG11-221ENST00000560299 OTOP2Q7RTS6 562 aa6.85□□□□□ -1.31
SPG11-221ENST00000560299 ZNF571Q7Z3V5 609 aaPredicted RBP6.85□□□□□ -1.31
SPG11-221ENST00000560299 SLC47A2Q86VL8 602 aa6.85□□□□□ -1.31
SPG11-221ENST00000560299 GPR65Q8IYL9 337 aa6.85□□□□□ -1.31
SPG11-221ENST00000560299 CMTR2Q8IYT2 770 aaKnown RBP6.85□□□□□ -1.31
SPG11-221ENST00000560299 CCAR2Q8N163 923 aaKnown RBP6.85□□□□□ -1.31
SPG11-221ENST00000560299 THEM5Q8N1Q8 247 aa6.85□□□□□ -1.31
SPG11-221ENST00000560299 LRRC43Q8N309 656 aa6.85□□□□□ -1.31
SPG11-221ENST00000560299 MSANTD4Q8NCY6 345 aa6.85□□□□□ -1.31
SPG11-221ENST00000560299 TMEM176AQ96HP8 235 aa6.85□□□□□ -1.31
SPG11-221ENST00000560299 HEXIM2Q96MH2 286 aaKnown RBP6.85□□□□□ -1.31
SPG11-221ENST00000560299 CASD1Q96PB1 797 aa6.85□□□□□ -1.31
SPG11-221ENST00000560299 ARID3AQ99856 593 aa6.85□□□□□ -1.31
SPG11-221ENST00000560299 TMEM175Q9BSA9 504 aa6.85□□□□□ -1.31
SPG11-221ENST00000560299 PBX4Q9BYU1 374 aa6.85□□□□□ -1.31
SPG11-221ENST00000560299 CXCL16Q9H2A7 254 aa6.85□□□□□ -1.31
SPG11-221ENST00000560299 GOLGA2P5Q9HBQ8 144 aa6.85□□□□□ -1.31
SPG11-221ENST00000560299 KCND1Q9NSA2 647 aa6.85□□□□□ -1.31
SPG11-221ENST00000560299 RNF19AQ9NV58 838 aa6.85□□□□□ -1.31
SPG11-221ENST00000560299 TBC1D13Q9NVG8 400 aa6.85□□□□□ -1.31
SPG11-221ENST00000560299 INTUQ9ULD6 942 aa6.85□□□□□ -1.31
SPG11-221ENST00000560299 POLIQ9UNA4 740 aa6.85□□□□□ -1.31
SPG11-221ENST00000560299 FAN1Q9Y2M0 1017 aa6.85□□□□□ -1.31
SPG11-221ENST00000560299 PPP2R2CQ9Y2T4 447 aa6.85□□□□□ -1.31
SPG11-221ENST00000560299 ATP8B3O60423 1300 aa6.84□□□□□ -1.31
SPG11-221ENST00000560299 A0A087X0T9 212 aa6.84□□□□□ -1.31
SPG11-221ENST00000560299 ZBBXA8MT70 800 aa6.84□□□□□ -1.31
SPG11-221ENST00000560299 A8MXQ7 604 aa6.84□□□□□ -1.31
SPG11-221ENST00000560299 TMEM189-UBE2V1I3L0A0 370 aa6.84□□□□□ -1.31
SPG11-221ENST00000560299 ZNF500O60304 480 aaPredicted RBP6.84□□□□□ -1.31
SPG11-221ENST00000560299 RTN2O75298 545 aa6.84□□□□□ -1.31
SPG11-221ENST00000560299 LSM8O95777 96 aaKnown RBP6.84□□□□□ -1.31
SPG11-221ENST00000560299 H2AFZP0C0S5 128 aa6.84□□□□□ -1.31
SPG11-221ENST00000560299 FAM228BP0C875 321 aa6.84□□□□□ -1.31
SPG11-221ENST00000560299 PNMA6AP0CW24 399 aaPredicted RBP6.84□□□□□ -1.31
SPG11-221ENST00000560299 ACRP10323 421 aa6.84□□□□□ -1.31
SPG11-221ENST00000560299 VDRP11473 427 aa6.84□□□□□ -1.31
SPG11-221ENST00000560299 CD19P15391 556 aa6.84□□□□□ -1.31
SPG11-221ENST00000560299 WARSP23381 471 aaKnown RBP6.84□□□□□ -1.31
SPG11-221ENST00000560299 DNAJB2P25686 324 aa6.84□□□□□ -1.31
SPG11-221ENST00000560299 PCSK1P29120 753 aa6.84□□□□□ -1.31
SPG11-221ENST00000560299 AARSP49588 968 aaKnown RBP eCLIP6.84□□□□□ -1.31
SPG11-221ENST00000560299 AFF1P51825 1210 aaKnown RBP6.84□□□□□ -1.31
SPG11-221ENST00000560299 VAV2P52735 878 aa6.84□□□□□ -1.31
SPG11-221ENST00000560299 ZNF132P52740 706 aa6.84□□□□□ -1.31
SPG11-221ENST00000560299 NDST1P52848 882 aa6.84□□□□□ -1.31
SPG11-221ENST00000560299 CDH8P55286 799 aa6.84□□□□□ -1.31
SPG11-221ENST00000560299 SLC8A3P57103 927 aa6.84□□□□□ -1.31
SPG11-221ENST00000560299 ERVK-21P61565 698 aa6.84□□□□□ -1.31
SPG11-221ENST00000560299 LSM11P83369 360 aaKnown RBP eCLIP6.84□□□□□ -1.31
SPG11-221ENST00000560299 CYP27A1Q02318 531 aa6.84□□□□□ -1.31
SPG11-221ENST00000560299 GFPT1Q06210 699 aaPredicted RBP6.84□□□□□ -1.31
SPG11-221ENST00000560299 DSC1Q08554 894 aa6.84□□□□□ -1.31
SPG11-221ENST00000560299 MTF1Q14872 753 aa6.84□□□□□ -1.31
SPG11-221ENST00000560299 PTPN14Q15678 1187 aa6.84□□□□□ -1.31
SPG11-221ENST00000560299 MAPRE1Q15691 268 aaKnown RBP6.84□□□□□ -1.31
SPG11-221ENST00000560299 CNGA2Q16280 664 aa6.84□□□□□ -1.31
SPG11-221ENST00000560299 IFI16Q16666 785 aaKnown RBP6.84□□□□□ -1.31
SPG11-221ENST00000560299 SOWAHAQ2M3V2 549 aa6.84□□□□□ -1.31
SPG11-221ENST00000560299 ASTE1Q2TB18 679 aaPredicted RBP6.84□□□□□ -1.31
SPG11-221ENST00000560299 ZNF394Q53GI3 561 aa6.84□□□□□ -1.31
SPG11-221ENST00000560299 SGO2Q562F6 1265 aa6.84□□□□□ -1.31
SPG11-221ENST00000560299 SPOUT1Q5T280 376 aaKnown RBP6.84□□□□□ -1.31
SPG11-221ENST00000560299 TAF3Q5VWG9 929 aa6.84□□□□□ -1.31
SPG11-221ENST00000560299 ZNF662Q6ZS27 426 aa6.84□□□□□ -1.31
SPG11-221ENST00000560299 TOGARAM2Q6ZUX3 1019 aa6.84□□□□□ -1.31
SPG11-221ENST00000560299 H2AFVQ71UI9 128 aa6.84□□□□□ -1.31
SPG11-221ENST00000560299 NOP9Q86U38 636 aaKnown RBP6.84□□□□□ -1.31
SPG11-221ENST00000560299 GLYCTKQ8IVS8 523 aa6.84□□□□□ -1.31
SPG11-221ENST00000560299 COLGALT2Q8IYK4 626 aa6.84□□□□□ -1.31
SPG11-221ENST00000560299 ADGRF2Q8IZF7 708 aa6.84□□□□□ -1.31
SPG11-221ENST00000560299 UBR7Q8N806 425 aa6.84□□□□□ -1.31
SPG11-221ENST00000560299 TMEM35BQ8NCS4 154 aa6.84□□□□□ -1.31
SPG11-221ENST00000560299 SLC30A5Q8TAD4 765 aa6.84□□□□□ -1.31
SPG11-221ENST00000560299 EPS8L1Q8TE68 723 aa6.84□□□□□ -1.31
SPG11-221ENST00000560299 ZNF606Q8WXB4 792 aa6.84□□□□□ -1.31
SPG11-221ENST00000560299 CTNNBL1Q8WYA6 563 aaPredicted RBP6.84□□□□□ -1.31
SPG11-221ENST00000560299 ELMO3Q96BJ8 720 aa6.84□□□□□ -1.31
SPG11-221ENST00000560299 TIFAQ96CG3 184 aa6.84□□□□□ -1.31
SPG11-221ENST00000560299 TRIM11Q96F44 468 aa6.84□□□□□ -1.31
SPG11-221ENST00000560299 CALR3Q96L12 384 aaKnown RBP6.84□□□□□ -1.31
SPG11-221ENST00000560299 SENP8Q96LD8 212 aa6.84□□□□□ -1.31
SPG11-221ENST00000560299 NOX5Q96PH1 765 aa6.84□□□□□ -1.31
SPG11-221ENST00000560299 DESI2Q9BSY9 194 aa6.84□□□□□ -1.31
SPG11-221ENST00000560299 ZBED2Q9BTP6 218 aa6.84□□□□□ -1.31
SPG11-221ENST00000560299 ZNF518BQ9C0D4 1074 aa6.84□□□□□ -1.31
SPG11-221ENST00000560299 MIS12Q9H081 205 aa6.84□□□□□ -1.31
SPG11-221ENST00000560299 LMAN2LQ9H0V9 348 aa6.84□□□□□ -1.31
SPG11-221ENST00000560299 SMYD3Q9H7B4 428 aa6.84□□□□□ -1.31
SPG11-221ENST00000560299 SLC28A3Q9HAS3 691 aa6.84□□□□□ -1.31
SPG11-221ENST00000560299 AAASQ9NRG9 546 aa6.84□□□□□ -1.31
SPG11-221ENST00000560299 SPTLC3Q9NUV7 552 aa6.84□□□□□ -1.31
SPG11-221ENST00000560299 TRMT1Q9NXH9 659 aaKnown RBP6.84□□□□□ -1.31
SPG11-221ENST00000560299 MYO1AQ9UBC5 1043 aa6.84□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms