RNA–Protein interactions for RNA: ENST00000560236.1

LRRC28-218, Transcript of leucine rich repeat containing 28, humanhuman

TSL 4

Gene LRRC28, Length 703 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC28-218ENST00000560236 NEU2Q9Y3R4 380 aa4.6□□□□□ -1.67
LRRC28-218ENST00000560236 DHX29Q7Z478 1369 aaKnown RBP4.6□□□□□ -1.67
LRRC28-218ENST00000560236 CAMSAP2Q08AD1 1489 aa4.6□□□□□ -1.67
LRRC28-218ENST00000560236 TET3O43151 1660 aa4.6□□□□□ -1.67
LRRC28-218ENST00000560236 LINC00473A8K010 186 aa4.59□□□□□ -1.67
LRRC28-218ENST00000560236 CHRM2P08172 466 aa4.59□□□□□ -1.67
LRRC28-218ENST00000560236 SLC6A4P31645 630 aa4.59□□□□□ -1.67
LRRC28-218ENST00000560236 DYRK1AQ13627 763 aa4.59□□□□□ -1.67
LRRC28-218ENST00000560236 NCOA2Q15596 1464 aa4.59□□□□□ -1.67
LRRC28-218ENST00000560236 FAM153CQ494X1 144 aa4.59□□□□□ -1.67
LRRC28-218ENST00000560236 PREPLQ4J6C6 727 aaPredicted RBP4.59□□□□□ -1.67
LRRC28-218ENST00000560236 LCE1AQ5T7P2 110 aa4.59□□□□□ -1.67
LRRC28-218ENST00000560236 UTP14CQ5TAP6 766 aaKnown RBP4.59□□□□□ -1.67
LRRC28-218ENST00000560236 Q8N9P0 234 aaPredicted RBP4.59□□□□□ -1.67
LRRC28-218ENST00000560236 C9orf106Q8NAJ2 232 aa4.59□□□□□ -1.67
LRRC28-218ENST00000560236 MYCBPAPQ8TBZ2 947 aa4.59□□□□□ -1.67
LRRC28-218ENST00000560236 LRRC59Q96AG4 307 aaKnown RBP4.59□□□□□ -1.67
LRRC28-218ENST00000560236 HAPLN3Q96S86 360 aa4.59□□□□□ -1.67
LRRC28-218ENST00000560236 SETD5Q9C0A6 1442 aa4.59□□□□□ -1.67
LRRC28-218ENST00000560236 TNKS1BP1Q9C0C2 1729 aaKnown RBP4.59□□□□□ -1.67
LRRC28-218ENST00000560236 GPATCH8Q9UKJ3 1502 aaKnown RBP4.59□□□□□ -1.67
LRRC28-218ENST00000560236 ST3GAL5Q9UNP4 418 aa4.59□□□□□ -1.67
LRRC28-218ENST00000560236 GPR45Q9Y5Y3 372 aa4.59□□□□□ -1.67
LRRC28-218ENST00000560236 CCDC18Q5T9S5 1454 aa4.58□□□□□ -1.68
LRRC28-218ENST00000560236 BCL9LQ86UU0 1499 aa4.58□□□□□ -1.68
LRRC28-218ENST00000560236 MTHFD1P11586 935 aaKnown RBP4.58□□□□□ -1.68
LRRC28-218ENST00000560236 ITPKBP27987 946 aa4.58□□□□□ -1.68
LRRC28-218ENST00000560236 HNRNPMP52272 730 aaKnown RBP eCLIP4.58□□□□□ -1.68
LRRC28-218ENST00000560236 TXNRD1Q16881 649 aa4.58□□□□□ -1.68
LRRC28-218ENST00000560236 CT47A1Q5JQC4 288 aaPredicted RBP4.58□□□□□ -1.68
LRRC28-218ENST00000560236 ADGRG5Q8IZF4 528 aa4.58□□□□□ -1.68
LRRC28-218ENST00000560236 DCBLD1Q8N8Z6 715 aa4.58□□□□□ -1.68
LRRC28-218ENST00000560236 CHAC2Q8WUX2 184 aa4.58□□□□□ -1.68
LRRC28-218ENST00000560236 SNX19Q92543 992 aa4.58□□□□□ -1.68
LRRC28-218ENST00000560236 SLC2A13Q96QE2 648 aa4.58□□□□□ -1.68
LRRC28-218ENST00000560236 VSX1Q9NZR4 365 aaPredicted RBP4.58□□□□□ -1.68
LRRC28-218ENST00000560236 CTTNBP2NLQ9P2B4 639 aa4.58□□□□□ -1.68
LRRC28-218ENST00000560236 INTUQ9ULD6 942 aa4.58□□□□□ -1.68
LRRC28-218ENST00000560236 EP400Q96L91 3159 aa4.58□□□□□ -1.68
LRRC28-218ENST00000560236 RGPD1P0DJD0 1748 aa4.58□□□□□ -1.68
LRRC28-218ENST00000560236 PIK3C2BO00750 1634 aa4.57□□□□□ -1.68
LRRC28-218ENST00000560236 ERVK-7P63135 1459 aa4.57□□□□□ -1.68
LRRC28-218ENST00000560236 AOX1Q06278 1338 aa4.57□□□□□ -1.68
LRRC28-218ENST00000560236 TOR1BO14657 336 aa4.57□□□□□ -1.68
LRRC28-218ENST00000560236 KIF3BO15066 747 aa4.57□□□□□ -1.68
LRRC28-218ENST00000560236 GRM6O15303 877 aa4.57□□□□□ -1.68
LRRC28-218ENST00000560236 PRKD3O94806 890 aa4.57□□□□□ -1.68
LRRC28-218ENST00000560236 ANXA11P50995 505 aaKnown RBP4.57□□□□□ -1.68
LRRC28-218ENST00000560236 C1QTNF8P60827 252 aa4.57□□□□□ -1.68
LRRC28-218ENST00000560236 MAPK7Q13164 816 aa4.57□□□□□ -1.68
LRRC28-218ENST00000560236 RSPH3Q86UC2 560 aa4.57□□□□□ -1.68
LRRC28-218ENST00000560236 RASAL3Q86YV0 1011 aa4.57□□□□□ -1.68
LRRC28-218ENST00000560236 AFAP1L2Q8N4X5 818 aa4.57□□□□□ -1.68
LRRC28-218ENST00000560236 PPM1NQ8N819 430 aa4.57□□□□□ -1.68
LRRC28-218ENST00000560236 PDPRQ8NCN5 879 aa4.57□□□□□ -1.68
LRRC28-218ENST00000560236 NRG4Q8WWG1 115 aa4.57□□□□□ -1.68
LRRC28-218ENST00000560236 TDP1Q9NUW8 608 aa4.57□□□□□ -1.68
LRRC28-218ENST00000560236 ADAM21Q9UKJ8 722 aa4.57□□□□□ -1.68
LRRC28-218ENST00000560236 CEP152O94986 1710 aa4.57□□□□□ -1.68
LRRC28-218ENST00000560236 EIF2AK4Q9P2K8 1649 aaKnown RBP4.57□□□□□ -1.68
LRRC28-218ENST00000560236 PTCH1Q13635 1447 aa4.56□□□□□ -1.68
LRRC28-218ENST00000560236 CCDC195A0A1B0GUA6 201 aa4.56□□□□□ -1.68
LRRC28-218ENST00000560236 GCOM1H8Y6P7 765 aaPredicted RBP4.56□□□□□ -1.68
LRRC28-218ENST00000560236 SUN1O94901 812 aa4.56□□□□□ -1.68
LRRC28-218ENST00000560236 SBK3P0C264 359 aa4.56□□□□□ -1.68
LRRC28-218ENST00000560236 PPP3CBP16298 524 aa4.56□□□□□ -1.68
LRRC28-218ENST00000560236 CPEP16870 476 aa4.56□□□□□ -1.68
LRRC28-218ENST00000560236 ATF3P18847 181 aa4.56□□□□□ -1.68
LRRC28-218ENST00000560236 AGXTP21549 392 aa4.56□□□□□ -1.68
LRRC28-218ENST00000560236 ITIH3Q06033 890 aa4.56□□□□□ -1.68
LRRC28-218ENST00000560236 SLC10A2Q12908 348 aaPredicted RBP4.56□□□□□ -1.68
LRRC28-218ENST00000560236 LLGL1Q15334 1064 aa4.56□□□□□ -1.68
LRRC28-218ENST00000560236 PABPC1LQ4VXU2 614 aaKnown RBP4.56□□□□□ -1.68
LRRC28-218ENST00000560236 B3GALNT2Q8NCR0 500 aa4.56□□□□□ -1.68
LRRC28-218ENST00000560236 NSUN7Q8NE18 718 aaKnown RBP4.56□□□□□ -1.68
LRRC28-218ENST00000560236 ABCF1Q8NE71 845 aaKnown RBP eCLIP4.56□□□□□ -1.68
LRRC28-218ENST00000560236 RAB24Q969Q5 203 aa4.56□□□□□ -1.68
LRRC28-218ENST00000560236 TMX3Q96JJ7 454 aa4.56□□□□□ -1.68
LRRC28-218ENST00000560236 KLHL32Q96NJ5 620 aa4.56□□□□□ -1.68
LRRC28-218ENST00000560236 PACSIN1Q9BY11 444 aa4.56□□□□□ -1.68
LRRC28-218ENST00000560236 SLKQ9H2G2 1235 aaPredicted RBP4.56□□□□□ -1.68
LRRC28-218ENST00000560236 FLRT1Q9NZU1 646 aa4.56□□□□□ -1.68
LRRC28-218ENST00000560236 ATRNO75882 1429 aa4.55□□□□□ -1.68
LRRC28-218ENST00000560236 TMEM2Q9UHN6 1383 aa4.55□□□□□ -1.68
LRRC28-218ENST00000560236 LAMC1P11047 1609 aa4.55□□□□□ -1.68
LRRC28-218ENST00000560236 IKBKBO14920 756 aa4.55□□□□□ -1.68
LRRC28-218ENST00000560236 NXPH1P58417 271 aa4.55□□□□□ -1.68
LRRC28-218ENST00000560236 MC2RQ01718 297 aa4.55□□□□□ -1.68
LRRC28-218ENST00000560236 PIGFQ07326 219 aa4.55□□□□□ -1.68
LRRC28-218ENST00000560236 EIF2B5Q13144 721 aaKnown RBP4.55□□□□□ -1.68
LRRC28-218ENST00000560236 GRM1Q13255 1194 aa4.55□□□□□ -1.68
LRRC28-218ENST00000560236 HLXQ14774 488 aaPredicted RBP4.55□□□□□ -1.68
LRRC28-218ENST00000560236 MTX3Q5HYI7 312 aa4.55□□□□□ -1.68
LRRC28-218ENST00000560236 LHFPL2Q6ZUX7 228 aa4.55□□□□□ -1.68
LRRC28-218ENST00000560236 MIGA2Q7L4E1 593 aa4.55□□□□□ -1.68
LRRC28-218ENST00000560236 AMOTL1Q8IY63 956 aa4.55□□□□□ -1.68
LRRC28-218ENST00000560236 CFAP52Q8N1V2 620 aa4.55□□□□□ -1.68
LRRC28-218ENST00000560236 VGLL2Q8N8G2 317 aa4.55□□□□□ -1.68
LRRC28-218ENST00000560236 IL17RDQ8NFM7 739 aa4.55□□□□□ -1.68
LRRC28-218ENST00000560236 SEMA6DQ8NFY4 1073 aa4.55□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 71.5 ms