RNA–Protein interactions for RNA: ENST00000559933.1

SPG11-220, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 2

Gene SPG11, Length 518 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-220ENST00000559933 LOC101059915A0A1B0GWI6 518 aaPredicted RBP5.64□□□□□ -1.51
SPG11-220ENST00000559933 ZNF233A6NK53 670 aa5.64□□□□□ -1.51
SPG11-220ENST00000559933 LGALS16A8MUM7 142 aa5.64□□□□□ -1.51
SPG11-220ENST00000559933 F8W810 466 aa5.64□□□□□ -1.51
SPG11-220ENST00000559933 J3QW42 95 aa5.64□□□□□ -1.51
SPG11-220ENST00000559933 GPR182O15218 404 aa5.64□□□□□ -1.51
SPG11-220ENST00000559933 CAND2O75155 1236 aa5.64□□□□□ -1.51
SPG11-220ENST00000559933 VNN1O95497 513 aa5.64□□□□□ -1.51
SPG11-220ENST00000559933 CAVIN2O95810 425 aa5.64□□□□□ -1.51
SPG11-220ENST00000559933 TIMP1P01033 207 aa5.64□□□□□ -1.51
SPG11-220ENST00000559933 RPLP1P05386 114 aaKnown RBP5.64□□□□□ -1.51
SPG11-220ENST00000559933 PNMA6AP0CW24 399 aaPredicted RBP5.64□□□□□ -1.51
SPG11-220ENST00000559933 RAG1P15918 1043 aa5.64□□□□□ -1.51
SPG11-220ENST00000559933 RPL13P26373 211 aaKnown RBP5.64□□□□□ -1.51
SPG11-220ENST00000559933 MRE11P49959 708 aa5.64□□□□□ -1.51
SPG11-220ENST00000559933 UBASH3AP57075 661 aa5.64□□□□□ -1.51
SPG11-220ENST00000559933 TPM4P67936 248 aa5.64□□□□□ -1.51
SPG11-220ENST00000559933 DEFB103AP81534 67 aa5.64□□□□□ -1.51
SPG11-220ENST00000559933 MYL7Q01449 175 aa5.64□□□□□ -1.51
SPG11-220ENST00000559933 SOX4Q06945 474 aaPredicted RBP5.64□□□□□ -1.51
SPG11-220ENST00000559933 HYAL2Q12891 473 aa5.64□□□□□ -1.51
SPG11-220ENST00000559933 LRMPQ12912 555 aa5.64□□□□□ -1.51
SPG11-220ENST00000559933 ADGRE1Q14246 886 aa5.64□□□□□ -1.51
SPG11-220ENST00000559933 PSMD6Q15008 389 aa5.64□□□□□ -1.51
SPG11-220ENST00000559933 MAN2A1Q16706 1144 aa5.64□□□□□ -1.51
SPG11-220ENST00000559933 SLC10A6Q3KNW5 377 aa5.64□□□□□ -1.51
SPG11-220ENST00000559933 DCAF4L1Q3SXM0 396 aa5.64□□□□□ -1.51
SPG11-220ENST00000559933 VWA3BQ502W6 1294 aa5.64□□□□□ -1.51
SPG11-220ENST00000559933 PLEKHG4Q58EX7 1191 aa5.64□□□□□ -1.51
SPG11-220ENST00000559933 CT47A1Q5JQC4 288 aaPredicted RBP5.64□□□□□ -1.51
SPG11-220ENST00000559933 TDRD10Q5VZ19 366 aaKnown RBP5.64□□□□□ -1.51
SPG11-220ENST00000559933 SPOPLQ6IQ16 392 aa5.64□□□□□ -1.51
SPG11-220ENST00000559933 SARM1Q6SZW1 724 aa5.64□□□□□ -1.51
SPG11-220ENST00000559933 AGMOQ6ZNB7 445 aa5.64□□□□□ -1.51
SPG11-220ENST00000559933 TMC6Q7Z403 805 aa5.64□□□□□ -1.51
SPG11-220ENST00000559933 FRMD5Q7Z6J6 570 aa5.64□□□□□ -1.51
SPG11-220ENST00000559933 ECHDC2Q86YB7 292 aa5.64□□□□□ -1.51
SPG11-220ENST00000559933 ARHGEF19Q8IW93 802 aa5.64□□□□□ -1.51
SPG11-220ENST00000559933 GOLGA5Q8TBA6 731 aa5.64□□□□□ -1.51
SPG11-220ENST00000559933 HELQQ8TDG4 1101 aa5.64□□□□□ -1.51
SPG11-220ENST00000559933 GPR152Q8TDT2 470 aa5.64□□□□□ -1.51
SPG11-220ENST00000559933 SEMA4DQ92854 862 aa5.64□□□□□ -1.51
SPG11-220ENST00000559933 KAT5Q92993 513 aa5.64□□□□□ -1.51
SPG11-220ENST00000559933 MFSD14AQ96MC6 490 aa5.64□□□□□ -1.51
SPG11-220ENST00000559933 CGRRF1Q99675 332 aa5.64□□□□□ -1.51
SPG11-220ENST00000559933 ADPGKQ9BRR6 497 aa5.64□□□□□ -1.51
SPG11-220ENST00000559933 PI4K2AQ9BTU6 479 aa5.64□□□□□ -1.51
SPG11-220ENST00000559933 LSM14BQ9BX40 385 aaKnown RBP5.64□□□□□ -1.51
SPG11-220ENST00000559933 GTPBP4Q9BZE4 634 aaKnown RBP5.64□□□□□ -1.51
SPG11-220ENST00000559933 TRIM6Q9C030 488 aaPredicted RBP5.64□□□□□ -1.51
SPG11-220ENST00000559933 TMEM117Q9H0C3 514 aa5.64□□□□□ -1.51
SPG11-220ENST00000559933 NDST4Q9H3R1 872 aa5.64□□□□□ -1.51
SPG11-220ENST00000559933 RPF1Q9H9Y2 349 aaKnown RBP5.64□□□□□ -1.51
SPG11-220ENST00000559933 TPSG1Q9NRR2 321 aa5.64□□□□□ -1.51
SPG11-220ENST00000559933 MIOSQ9NXC5 875 aa5.64□□□□□ -1.51
SPG11-220ENST00000559933 ARMCX3Q9UH62 379 aaPredicted RBP5.64□□□□□ -1.51
SPG11-220ENST00000559933 PCDHB2Q9Y5E7 798 aa5.64□□□□□ -1.51
SPG11-220ENST00000559933 UTP18Q9Y5J1 556 aaKnown RBP eCLIP5.64□□□□□ -1.51
SPG11-220ENST00000559933 CITO14578 2027 aa5.64□□□□□ -1.51
SPG11-220ENST00000559933 TNRC18O15417 2968 aaPredicted RBP5.63□□□□□ -1.51
SPG11-220ENST00000559933 CASTOR2A6NHX0 329 aa5.63□□□□□ -1.51
SPG11-220ENST00000559933 C9IYK1 514 aa5.63□□□□□ -1.51
SPG11-220ENST00000559933 PTGESO14684 152 aa5.63□□□□□ -1.51
SPG11-220ENST00000559933 TNFRSF10BO14763 440 aa5.63□□□□□ -1.51
SPG11-220ENST00000559933 KIAA0355O15063 1070 aa5.63□□□□□ -1.51
SPG11-220ENST00000559933 POMCP01189 267 aa5.63□□□□□ -1.51
SPG11-220ENST00000559933 CALCAP01258 141 aa5.63□□□□□ -1.51
SPG11-220ENST00000559933 AFPP02771 609 aaKnown RBP5.63□□□□□ -1.51
SPG11-220ENST00000559933 CXCL10P02778 98 aa5.63□□□□□ -1.51
SPG11-220ENST00000559933 CLTAP09496 248 aa5.63□□□□□ -1.51
SPG11-220ENST00000559933 ITGA4P13612 1032 aa5.63□□□□□ -1.51
SPG11-220ENST00000559933 KRT13P13646 458 aa5.63□□□□□ -1.51
SPG11-220ENST00000559933 SLC9A1P19634 815 aa5.63□□□□□ -1.51
SPG11-220ENST00000559933 EEF1GP26641 437 aaKnown RBP5.63□□□□□ -1.51
SPG11-220ENST00000559933 AXLP30530 894 aa5.63□□□□□ -1.51
SPG11-220ENST00000559933 SCNN1AP37088 669 aa5.63□□□□□ -1.51
SPG11-220ENST00000559933 PBX1P40424 430 aa5.63□□□□□ -1.51
SPG11-220ENST00000559933 PBX3P40426 434 aa5.63□□□□□ -1.51
SPG11-220ENST00000559933 FMO5P49326 533 aa5.63□□□□□ -1.51
SPG11-220ENST00000559933 MXI1P50539 228 aa5.63□□□□□ -1.51
SPG11-220ENST00000559933 SCNN1GP51170 649 aa5.63□□□□□ -1.51
SPG11-220ENST00000559933 CDR1P51861 262 aa5.63□□□□□ -1.51
SPG11-220ENST00000559933 TFAMQ00059 246 aaKnown RBP5.63□□□□□ -1.51
SPG11-220ENST00000559933 CDC42EP1Q00587 391 aa5.63□□□□□ -1.51
SPG11-220ENST00000559933 UBXN1Q04323 297 aa5.63□□□□□ -1.51
SPG11-220ENST00000559933 PPP2R3AQ06190 1150 aa5.63□□□□□ -1.51
SPG11-220ENST00000559933 NR1I3Q14994 352 aa5.63□□□□□ -1.51
SPG11-220ENST00000559933 SYCP1Q15431 976 aa5.63□□□□□ -1.51
SPG11-220ENST00000559933 UVSSAQ2YD98 709 aa5.63□□□□□ -1.51
SPG11-220ENST00000559933 PAN2Q504Q3 1202 aaKnown RBP5.63□□□□□ -1.51
SPG11-220ENST00000559933 CLLU1OSQ5K130 101 aa5.63□□□□□ -1.51
SPG11-220ENST00000559933 SLFN12LQ6IEE8 588 aa5.63□□□□□ -1.51
SPG11-220ENST00000559933 DPY19L2P1Q6NXN4 242 aa5.63□□□□□ -1.51
SPG11-220ENST00000559933 FOXR2Q6PJQ5 311 aa5.63□□□□□ -1.51
SPG11-220ENST00000559933 SHISA2Q6UWI4 295 aa5.63□□□□□ -1.51
SPG11-220ENST00000559933 SCARA5Q6ZMJ2 495 aa5.63□□□□□ -1.51
SPG11-220ENST00000559933 CAPN12Q6ZSI9 719 aa5.63□□□□□ -1.51
SPG11-220ENST00000559933 C16orf59Q7L2K0 433 aa5.63□□□□□ -1.51
SPG11-220ENST00000559933 OTOP2Q7RTS6 562 aa5.63□□□□□ -1.51
SPG11-220ENST00000559933 FAM114A1Q8IWE2 563 aa5.63□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms