RNA–Protein interactions for RNA: ENST00000559822.1

SPG11-219, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 5

Gene SPG11, Length 561 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-219ENST00000559822 TTC9BQ8N6N2 239 aa13.21□□□□□ -0.29
SPG11-219ENST00000559822 LINC00301Q8NCQ3 95 aa13.21□□□□□ -0.29
SPG11-219ENST00000559822 NOC3LQ8WTT2 800 aaKnown RBP13.21□□□□□ -0.29
SPG11-219ENST00000559822 RUBCNQ92622 972 aa13.21□□□□□ -0.29
SPG11-219ENST00000559822 ANKRD36BP1Q96IX9 119 aa13.21□□□□□ -0.29
SPG11-219ENST00000559822 IKZF4Q9H2S9 585 aa13.21□□□□□ -0.29
SPG11-219ENST00000559822 CHRDQ9H2X0 955 aa13.21□□□□□ -0.29
SPG11-219ENST00000559822 TASP1Q9H6P5 420 aa13.21□□□□□ -0.29
SPG11-219ENST00000559822 ABI2Q9NYB9 513 aaPredicted RBP13.21□□□□□ -0.29
SPG11-219ENST00000559822 AGAP1Q9UPQ3 857 aa13.21□□□□□ -0.29
SPG11-219ENST00000559822 PCDHB5Q9Y5E4 795 aa13.21□□□□□ -0.29
SPG11-219ENST00000559822 TICRRQ7Z2Z1 1910 aa13.21□□□□□ -0.3
SPG11-219ENST00000559822 COL4A3Q01955 1670 aa13.21□□□□□ -0.3
SPG11-219ENST00000559822 COL4A2P08572 1712 aa13.2□□□□□ -0.3
SPG11-219ENST00000559822 A0A087X0B3 334 aa13.2□□□□□ -0.3
SPG11-219ENST00000559822 NRG2O14511 850 aaPredicted RBP13.2□□□□□ -0.3
SPG11-219ENST00000559822 CUTAO60888 179 aa13.2□□□□□ -0.3
SPG11-219ENST00000559822 SOAT2O75908 522 aa13.2□□□□□ -0.3
SPG11-219ENST00000559822 PRPF6O94906 941 aaKnown RBP13.2□□□□□ -0.3
SPG11-219ENST00000559822 YEATS4O95619 227 aa13.2□□□□□ -0.3
SPG11-219ENST00000559822 HSP90AA1P07900 732 aaKnown RBP13.2□□□□□ -0.3
SPG11-219ENST00000559822 HAPLN1P10915 354 aaPredicted RBP13.2□□□□□ -0.3
SPG11-219ENST00000559822 CASP5P51878 434 aa13.2□□□□□ -0.3
SPG11-219ENST00000559822 KPNA1P52294 538 aaPredicted RBP13.2□□□□□ -0.3
SPG11-219ENST00000559822 RBP5P82980 135 aa13.2□□□□□ -0.3
SPG11-219ENST00000559822 FOXK2Q01167 660 aa13.2□□□□□ -0.3
SPG11-219ENST00000559822 LRRC32Q14392 662 aa13.2□□□□□ -0.3
SPG11-219ENST00000559822 MAMSTRQ6ZN01 415 aa13.2□□□□□ -0.3
SPG11-219ENST00000559822 GAREM2Q75VX8 874 aa13.2□□□□□ -0.3
SPG11-219ENST00000559822 CSGALNACT2Q8N6G5 542 aa13.2□□□□□ -0.3
SPG11-219ENST00000559822 C1orf127Q8N9H9 656 aa13.2□□□□□ -0.3
SPG11-219ENST00000559822 IQUBQ8NA54 791 aa13.2□□□□□ -0.3
SPG11-219ENST00000559822 LEO1Q8WVC0 666 aaPredicted RBP13.2□□□□□ -0.3
SPG11-219ENST00000559822 LPIN3Q9BQK8 851 aa13.2□□□□□ -0.3
SPG11-219ENST00000559822 CBWD1Q9BRT8 395 aa13.2□□□□□ -0.3
SPG11-219ENST00000559822 MAGEF1Q9HAY2 307 aa13.2□□□□□ -0.3
SPG11-219ENST00000559822 KIAA1586Q9HCI6 787 aa13.2□□□□□ -0.3
SPG11-219ENST00000559822 PRMT8Q9NR22 394 aaPredicted RBP13.2□□□□□ -0.3
SPG11-219ENST00000559822 THG1LQ9NWX6 298 aaKnown RBP13.2□□□□□ -0.3
SPG11-219ENST00000559822 ZSCAN32Q9NX65 697 aa13.2□□□□□ -0.3
SPG11-219ENST00000559822 NUP210Q8TEM1 1887 aaPredicted RBP13.2□□□□□ -0.3
SPG11-219ENST00000559822 F5P12259 2224 aa13.2□□□□□ -0.3
SPG11-219ENST00000559822 GOLGA8IPA6NC78 632 aa13.19□□□□□ -0.3
SPG11-219ENST00000559822 ZNF233A6NK53 670 aa13.19□□□□□ -0.3
SPG11-219ENST00000559822 GOLGA8JA6NMD2 632 aa13.19□□□□□ -0.3
SPG11-219ENST00000559822 SOBPA7XYQ1 873 aa13.19□□□□□ -0.3
SPG11-219ENST00000559822 ARNTLO00327 626 aa13.19□□□□□ -0.3
SPG11-219ENST00000559822 EIF3DO15371 548 aaKnown RBP eCLIP13.19□□□□□ -0.3
SPG11-219ENST00000559822 TNNC2P02585 160 aa13.19□□□□□ -0.3
SPG11-219ENST00000559822 KRT19P08727 400 aa13.19□□□□□ -0.3
SPG11-219ENST00000559822 CSH1P0DML2 217 aa13.19□□□□□ -0.3
SPG11-219ENST00000559822 CSH2P0DML3 217 aa13.19□□□□□ -0.3
SPG11-219ENST00000559822 ATF6P18850 670 aa13.19□□□□□ -0.3
SPG11-219ENST00000559822 DDX6P26196 483 aaKnown RBP eCLIP13.19□□□□□ -0.3
SPG11-219ENST00000559822 PCSK1P29120 753 aa13.19□□□□□ -0.3
SPG11-219ENST00000559822 LHX1P48742 406 aa13.19□□□□□ -0.3
SPG11-219ENST00000559822 CCR3P51677 355 aa13.19□□□□□ -0.3
SPG11-219ENST00000559822 NRLP54845 237 aa13.19□□□□□ -0.3
SPG11-219ENST00000559822 ASIC1P78348 528 aa13.19□□□□□ -0.3
SPG11-219ENST00000559822 BFSP1Q12934 665 aa13.19□□□□□ -0.3
SPG11-219ENST00000559822 MYO1EQ12965 1108 aa13.19□□□□□ -0.3
SPG11-219ENST00000559822 MTAPQ13126 283 aa13.19□□□□□ -0.3
SPG11-219ENST00000559822 FZD5Q13467 585 aa13.19□□□□□ -0.3
SPG11-219ENST00000559822 STXBP5Q5T5C0 1151 aa13.19□□□□□ -0.3
SPG11-219ENST00000559822 HSCBQ8IWL3 235 aa13.19□□□□□ -0.3
SPG11-219ENST00000559822 PDCL2Q8N4E4 241 aa13.19□□□□□ -0.3
SPG11-219ENST00000559822 TOP6BLQ8N6T0 577 aa13.19□□□□□ -0.3
SPG11-219ENST00000559822 ZBTB44Q8NCP5 570 aa13.19□□□□□ -0.3
SPG11-219ENST00000559822 BPIFB1Q8TDL5 484 aa13.19□□□□□ -0.3
SPG11-219ENST00000559822 SECISBP2LQ93073 1101 aaKnown RBP13.19□□□□□ -0.3
SPG11-219ENST00000559822 SNX21Q969T3 373 aa13.19□□□□□ -0.3
SPG11-219ENST00000559822 ACBD6Q9BR61 282 aa13.19□□□□□ -0.3
SPG11-219ENST00000559822 MKNK1Q9BUB5 465 aa13.19□□□□□ -0.3
SPG11-219ENST00000559822 TRIM9Q9C026 710 aa13.19□□□□□ -0.3
SPG11-219ENST00000559822 PCIF1Q9H4Z3 704 aa13.19□□□□□ -0.3
SPG11-219ENST00000559822 ABCB6Q9NP58 842 aa13.19□□□□□ -0.3
SPG11-219ENST00000559822 KBTBD4Q9NVX7 518 aa13.19□□□□□ -0.3
SPG11-219ENST00000559822 GDAP2Q9NXN4 497 aa13.19□□□□□ -0.3
SPG11-219ENST00000559822 DDX43Q9NXZ2 648 aaKnown RBP13.19□□□□□ -0.3
SPG11-219ENST00000559822 UXTQ9UBK9 157 aaPredicted RBP13.19□□□□□ -0.3
SPG11-219ENST00000559822 UBE4BO95155 1302 aa13.18□□□□□ -0.3
SPG11-219ENST00000559822 EP300Q09472 2414 aaPredicted RBP13.18□□□□□ -0.3
SPG11-219ENST00000559822 SHISA7A6NL88 538 aa13.18□□□□□ -0.3
SPG11-219ENST00000559822 PRPF40AO75400 957 aaKnown RBP13.18□□□□□ -0.3
SPG11-219ENST00000559822 CCNE1P24864 410 aa13.18□□□□□ -0.3
SPG11-219ENST00000559822 AVPR1AP37288 418 aa13.18□□□□□ -0.3
SPG11-219ENST00000559822 ID4P47928 161 aa13.18□□□□□ -0.3
SPG11-219ENST00000559822 RPL10AP62906 217 aaKnown RBP13.18□□□□□ -0.3
SPG11-219ENST00000559822 E2F4Q16254 413 aa13.18□□□□□ -0.3
SPG11-219ENST00000559822 DGKKQ5KSL6 1271 aa13.18□□□□□ -0.3
SPG11-219ENST00000559822 CNNM4Q6P4Q7 775 aa13.18□□□□□ -0.3
SPG11-219ENST00000559822 LRRTM3Q86VH5 581 aa13.18□□□□□ -0.3
SPG11-219ENST00000559822 RALGPS2Q86X27 583 aaPredicted RBP13.18□□□□□ -0.3
SPG11-219ENST00000559822 ZNF687Q8N1G0 1237 aa13.18□□□□□ -0.3
SPG11-219ENST00000559822 CELF5Q8N6W0 485 aaKnown RBP13.18□□□□□ -0.3
SPG11-219ENST00000559822 ZSWIM2Q8NEG5 633 aa13.18□□□□□ -0.3
SPG11-219ENST00000559822 GIPC2Q8TF65 315 aa13.18□□□□□ -0.3
SPG11-219ENST00000559822 MRPS31Q92665 395 aaKnown RBP13.18□□□□□ -0.3
SPG11-219ENST00000559822 DHX58Q96C10 678 aa13.18□□□□□ -0.3
SPG11-219ENST00000559822 RSPRY1Q96DX4 576 aa13.18□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms