RNA–Protein interactions for RNA: ENST00000558013.5

LDLR-207, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LDLR, Length 3,144 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-207ENST00000558013 NFASCO94856 1347 aa13.6□□□□□ -0.23
LDLR-207ENST00000558013 ARID2Q68CP9 1835 aa13.6□□□□□ -0.23
LDLR-207ENST00000558013 TCRBV5S1A1TA0A578 114 aa13.6□□□□□ -0.23
LDLR-207ENST00000558013 FAM189A1O60320 539 aa13.6□□□□□ -0.23
LDLR-207ENST00000558013 ASS1P00966 412 aaKnown RBP13.6□□□□□ -0.23
LDLR-207ENST00000558013 NQO1P15559 274 aaKnown RBP13.6□□□□□ -0.23
LDLR-207ENST00000558013 KRT15P19012 456 aa13.6□□□□□ -0.23
LDLR-207ENST00000558013 UBA1P22314 1058 aaKnown RBP13.6□□□□□ -0.23
LDLR-207ENST00000558013 ATP5DP30049 168 aa13.6□□□□□ -0.23
LDLR-207ENST00000558013 SSTR1P30872 391 aa13.6□□□□□ -0.23
LDLR-207ENST00000558013 ZNF132P52740 706 aa13.6□□□□□ -0.23
LDLR-207ENST00000558013 GSCP56915 257 aaPredicted RBP13.6□□□□□ -0.23
LDLR-207ENST00000558013 ZNF280AP59817 542 aaPredicted RBP13.6□□□□□ -0.23
LDLR-207ENST00000558013 BNIP1Q12981 228 aa13.6□□□□□ -0.23
LDLR-207ENST00000558013 PDIA2Q13087 525 aaKnown RBP13.6□□□□□ -0.23
LDLR-207ENST00000558013 SLC1A5Q15758 541 aa13.6□□□□□ -0.23
LDLR-207ENST00000558013 ANGEL2Q5VTE6 544 aaKnown RBP13.6□□□□□ -0.23
LDLR-207ENST00000558013 TRABD2AQ86V40 505 aa13.6□□□□□ -0.23
LDLR-207ENST00000558013 THNSL1Q8IYQ7 743 aa13.6□□□□□ -0.23
LDLR-207ENST00000558013 ANKRD35Q8N283 1001 aa13.6□□□□□ -0.23
LDLR-207ENST00000558013 ALLCQ8N6M5 410 aa13.6□□□□□ -0.23
LDLR-207ENST00000558013 AGAP11Q8TF27 550 aa13.6□□□□□ -0.23
LDLR-207ENST00000558013 TRAPPC12Q8WVT3 735 aa13.6□□□□□ -0.23
LDLR-207ENST00000558013 KLHL29Q96CT2 875 aa13.6□□□□□ -0.23
LDLR-207ENST00000558013 KLF6Q99612 283 aaPredicted RBP13.6□□□□□ -0.23
LDLR-207ENST00000558013 NCAPGQ9BPX3 1015 aa13.6□□□□□ -0.23
LDLR-207ENST00000558013 hCG_1818297A0A087WSY0 165 aa13.59□□□□□ -0.23
LDLR-207ENST00000558013 TCRBV7S3A2A0A539 114 aa13.59□□□□□ -0.23
LDLR-207ENST00000558013 GOLGA8RI6L899 631 aa13.59□□□□□ -0.23
LDLR-207ENST00000558013 PIK3R2O00459 728 aa13.59□□□□□ -0.23
LDLR-207ENST00000558013 DKC1O60832 514 aaKnown RBP eCLIP13.59□□□□□ -0.23
LDLR-207ENST00000558013 COPS2P61201 443 aa13.59□□□□□ -0.23
LDLR-207ENST00000558013 STAT4Q14765 748 aa13.59□□□□□ -0.23
LDLR-207ENST00000558013 LY6KQ17RY6 165 aa13.59□□□□□ -0.23
LDLR-207ENST00000558013 RAB6CQ53S08 254 aa13.59□□□□□ -0.23
LDLR-207ENST00000558013 DENND1BQ6P3S1 775 aa13.59□□□□□ -0.23
LDLR-207ENST00000558013 RCOR2Q8IZ40 523 aa13.59□□□□□ -0.23
LDLR-207ENST00000558013 VCPIP1Q96JH7 1222 aa13.59□□□□□ -0.23
LDLR-207ENST00000558013 RAB6CQ9H0N0 254 aa13.59□□□□□ -0.23
LDLR-207ENST00000558013 WDR91A4D1P6 747 aa13.59□□□□□ -0.23
LDLR-207ENST00000558013 FAM47DPA6NHR8 397 aa13.59□□□□□ -0.23
LDLR-207ENST00000558013 B4GALT5O43286 388 aa13.59□□□□□ -0.23
LDLR-207ENST00000558013 ECM2O94769 699 aaPredicted RBP13.59□□□□□ -0.23
LDLR-207ENST00000558013 GSTA1P08263 222 aa13.59□□□□□ -0.23
LDLR-207ENST00000558013 POTEJP0CG39 1038 aa13.59□□□□□ -0.23
LDLR-207ENST00000558013 CDKN2BP42772 138 aa13.59□□□□□ -0.23
LDLR-207ENST00000558013 OASLQ15646 514 aaKnown RBP13.59□□□□□ -0.23
LDLR-207ENST00000558013 STXBP2Q15833 593 aa13.59□□□□□ -0.23
LDLR-207ENST00000558013 WLSQ5T9L3 541 aa13.59□□□□□ -0.23
LDLR-207ENST00000558013 TRIM72Q6ZMU5 477 aa13.59□□□□□ -0.23
LDLR-207ENST00000558013 CATSPERGQ6ZRH7 1159 aa13.59□□□□□ -0.23
LDLR-207ENST00000558013 ARHGEF18Q6ZSZ5 1173 aa13.59□□□□□ -0.23
LDLR-207ENST00000558013 MAGEB18Q96M61 343 aa13.59□□□□□ -0.23
LDLR-207ENST00000558013 TMEM237Q96Q45 408 aa13.59□□□□□ -0.23
LDLR-207ENST00000558013 MAK16Q9BXY0 300 aaKnown RBP13.59□□□□□ -0.23
LDLR-207ENST00000558013 TRABDQ9H4I3 376 aa13.59□□□□□ -0.23
LDLR-207ENST00000558013 PCSK1NQ9UHG2 260 aa13.59□□□□□ -0.23
LDLR-207ENST00000558013 RLFQ13129 1914 aa13.59□□□□□ -0.23
LDLR-207ENST00000558013 MSCO60682 206 aa13.59□□□□□ -0.23
LDLR-207ENST00000558013 TJP3O95049 919 aa13.59□□□□□ -0.23
LDLR-207ENST00000558013 ASMTLO95671 621 aa13.59□□□□□ -0.23
LDLR-207ENST00000558013 GPX6P59796 221 aa13.59□□□□□ -0.23
LDLR-207ENST00000558013 RNASELQ05823 741 aaKnown RBP13.59□□□□□ -0.23
LDLR-207ENST00000558013 FNBP1LQ5T0N5 605 aa13.59□□□□□ -0.23
LDLR-207ENST00000558013 SLFN12LQ6IEE8 588 aa13.59□□□□□ -0.23
LDLR-207ENST00000558013 UBR7Q8N806 425 aa13.59□□□□□ -0.23
LDLR-207ENST00000558013 LRRN4Q8WUT4 740 aa13.59□□□□□ -0.23
LDLR-207ENST00000558013 CCDC77Q9BR77 488 aa13.59□□□□□ -0.23
LDLR-207ENST00000558013 WDR83Q9BRX9 315 aaKnown RBP13.59□□□□□ -0.23
LDLR-207ENST00000558013 ALG13Q9NP73 1137 aaKnown RBP13.59□□□□□ -0.23
LDLR-207ENST00000558013 ADCY3O60266 1144 aa13.58□□□□□ -0.24
LDLR-207ENST00000558013 CD19P15391 556 aa13.58□□□□□ -0.24
LDLR-207ENST00000558013 TBXAS1P24557 533 aaPredicted RBP13.58□□□□□ -0.24
LDLR-207ENST00000558013 TFDP1Q14186 410 aa13.58□□□□□ -0.24
LDLR-207ENST00000558013 MTFR1Q15390 333 aa13.58□□□□□ -0.24
LDLR-207ENST00000558013 PTPN20Q4JDL3 420 aa13.58□□□□□ -0.24
LDLR-207ENST00000558013 EAPPQ56P03 285 aaPredicted RBP13.58□□□□□ -0.24
LDLR-207ENST00000558013 TREML2Q5T2D2 321 aa13.58□□□□□ -0.24
LDLR-207ENST00000558013 RNASEH2BQ5TBB1 312 aaKnown RBP13.58□□□□□ -0.24
LDLR-207ENST00000558013 RNF149Q8NC42 400 aa13.58□□□□□ -0.24
LDLR-207ENST00000558013 ACTL9Q8TC94 416 aa13.58□□□□□ -0.24
LDLR-207ENST00000558013 PPP1R16BQ96T49 567 aa13.58□□□□□ -0.24
LDLR-207ENST00000558013 IMPG2Q9BZV3 1241 aa13.58□□□□□ -0.24
LDLR-207ENST00000558013 FARP2O94887 1054 aaPredicted RBP13.58□□□□□ -0.24
LDLR-207ENST00000558013 ATG7O95352 703 aa13.58□□□□□ -0.24
LDLR-207ENST00000558013 PIGRP01833 764 aa13.58□□□□□ -0.24
LDLR-207ENST00000558013 RXRBP28702 533 aa13.58□□□□□ -0.24
LDLR-207ENST00000558013 VCPP55072 806 aaKnown RBP13.58□□□□□ -0.24
LDLR-207ENST00000558013 TFDP3Q5H9I0 405 aa13.58□□□□□ -0.24
LDLR-207ENST00000558013 ERICH1Q86X53 443 aa13.58□□□□□ -0.24
LDLR-207ENST00000558013 CDHR1Q96JP9 859 aa13.58□□□□□ -0.24
LDLR-207ENST00000558013 PIM2Q9P1W9 311 aa13.58□□□□□ -0.24
LDLR-207ENST00000558013 HMGXB4Q9UGU5 601 aa13.58□□□□□ -0.24
LDLR-207ENST00000558013 MCM8Q9UJA3 840 aa13.58□□□□□ -0.24
LDLR-207ENST00000558013 H0YCG3 227 aa13.57□□□□□ -0.24
LDLR-207ENST00000558013 ZBTB7AO95365 584 aa13.57□□□□□ -0.24
LDLR-207ENST00000558013 CA4P22748 312 aa13.57□□□□□ -0.24
LDLR-207ENST00000558013 TCF7P36402 384 aaPredicted RBP13.57□□□□□ -0.24
LDLR-207ENST00000558013 STAT5BP51692 787 aa13.57□□□□□ -0.24
LDLR-207ENST00000558013 OTUD4Q01804 1114 aaKnown RBP13.57□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms